A robust recognition error recovery for micro-flow cytometer by machine-learning enhanced single-frame super-resolution processing

With the recent advancement in microfluidics based lab-on-a-chip technology, lensless imaging system integrating microfluidic channel with CMOS image sensor has become a promising solution for the system minimization of flow cytometer. The design challenge for such an imaging-based micro-flow cytometer under poor resolution is how to recover cell recognition error under various flow rates. A microfluidic lensless imaging system is developed in this paper using extreme-learning-machine enhanced single-frame super-resolution processing, which can effectively recover the recognition error when increasing flow rate for throughput. As shown in the experiments, with mixed flowing HepG2 and Huh7 cells as inputs, the developed scheme shows that 23% better recognition accuracy can be achieved compared to the one without error recovery. Meanwhile, it also achieves an average of 98.5% resource saving compared to the previous multi-frame super-resolution processing.

[1]  Krishnendu Chakrabarty,et al.  Error Recovery in Cyberphysical Digital Microfluidic Biochips , 2013, IEEE Transactions on Computer-Aided Design of Integrated Circuits and Systems.

[2]  Douglas D. Richman,et al.  Antiretroviral Treatment of Adult HIV Infection , 2008 .

[3]  A. Ozcan,et al.  Ultra wide-field lens-free monitoring of cells on-chip. , 2008, Lab on a chip.

[4]  David Sander,et al.  Contact Imaging: Simulation and Experiment , 2007, IEEE Transactions on Circuits and Systems I: Regular Papers.

[5]  Guoan Zheng,et al.  Color sub-pixel resolving optofluidic microscope and its application to blood cell imaging for malaria diagnosis , 2011 .

[6]  Aydogan Ozcan,et al.  On-Chip Cytometry using Plasmonic Nanoparticle Enhanced Lensfree Holography , 2013, Scientific Reports.

[7]  P ? ? ? ? ? ? ? % ? ? ? ? , 1991 .

[8]  Aydogan Ozcan,et al.  High‐throughput lensfree imaging and characterization of a heterogeneous cell solution on a chip , 2009, Biotechnology and bioengineering.

[9]  J. Massagué,et al.  Cancer Metastasis: Building a Framework , 2006, Cell.

[10]  Euncheol Choi,et al.  Super‐resolution approach to overcome physical limitations of imaging sensors: An overview , 2004, Int. J. Imaging Syst. Technol..

[11]  Chi-Keung Tang,et al.  Limits of Learning-Based Superresolution Algorithms , 2007, 2007 IEEE 11th International Conference on Computer Vision.

[12]  Kiat Seng Yeo,et al.  A Super-resolution CMOS Imager for Microfluidic Imaging Applications , 2012 .

[13]  Eero P. Simoncelli,et al.  Image quality assessment: from error visibility to structural similarity , 2004, IEEE Transactions on Image Processing.

[14]  Hongming Zhou,et al.  Extreme Learning Machine for Regression and Multiclass Classification , 2012, IEEE Transactions on Systems, Man, and Cybernetics, Part B (Cybernetics).

[15]  C. Wittwer,et al.  Flow cytometry: principles and clinical applications in hematology. , 2000, Clinical chemistry.

[16]  Kiat Seng Yeo,et al.  High-speed CMOS image sensor for high-throughput lensless microfluidic imaging system , 2012, Electronic Imaging.

[17]  Corinna Cortes,et al.  Support-Vector Networks , 1995, Machine Learning.

[18]  Demetri Psaltis,et al.  Optofluidic microscopy--a method for implementing a high resolution optical microscope on a chip. , 2006, Lab on a chip.

[19]  Krishnendu Chakrabarty,et al.  Design methodology for sample preparation on digital microfluidic biochips , 2012, 2012 IEEE 30th International Conference on Computer Design (ICCD).

[21]  A. Givan,et al.  Flow Cytometry: First Principles , 1992 .

[22]  William T. Freeman,et al.  Learning Low-Level Vision , 1999, Proceedings of the Seventh IEEE International Conference on Computer Vision.

[23]  Krishnendu Chakrabarty,et al.  Reliability-oriented broadcast electrode-addressing for pin-constrained digital microfluidic biochips , 2011, 2011 IEEE/ACM International Conference on Computer-Aided Design (ICCAD).

[24]  Moon Gi Kang,et al.  Super-resolution image reconstruction: a technical overview , 2003, IEEE Signal Process. Mag..

[25]  Chip-Hong Chang,et al.  Cyber-Physical Thermal Management of 3D Multi-Core Cache-Processor System with Microfluidic Cooling , 2011, J. Low Power Electron..

[26]  Guoan Zheng,et al.  Color-capable sub-pixel resolving optofluidic microscope for on-chip cell imaging , 2010, IEEE Winter Topicals 2011.

[27]  Ali Khademhosseini,et al.  Integrating microfluidics and lensless imaging for point-of-care testing , 2009, 2009 IEEE 35th Annual Northeast Bioengineering Conference.

[28]  Albert J. P. Theuwissen,et al.  CMOS image sensors: State-of-the-art , 2008 .

[29]  M. Roederer,et al.  A practical approach to multicolor flow cytometry for immunophenotyping. , 2000, Journal of immunological methods.

[30]  A. Roli Artificial Neural Networks , 2012, Lecture Notes in Computer Science.

[31]  Nae Yoon Lee,et al.  A facile route for irreversible bonding of plastic-PDMS hybrid microdevices at room temperature. , 2010, Lab on a chip.

[32]  O. C. Blair,et al.  Practical Flow Cytometry , 1985, The Yale Journal of Biology and Medicine.

[33]  Bir Bhanu,et al.  Image super-resolution by extreme learning machine , 2012, 2012 19th IEEE International Conference on Image Processing.