θ-Nanopipette for Single-Cell Resistive-Pulse Profiling of DNA Repair Proteins Accompanied by Drug Evaluation.

Single-cell analysis of the DNA repair protein is important but remains unachieved. Exploration of nanopipettte technologies in single-cell electroanalysis has recently seen rapid growth, while the θ-nanopipette represents an emerging technological frontier with its potential largely veiled. Here a θ-nanopipette is first applied for single-cell resistive-pulse sensing (RPS) of the important DNA repair protein O6-alkylguanine DNA alkyltransferase (hAGT). The removal of alkyl mutations by hAGT could restore the damaged aptamer linking with a structural DNA carrier, allowing the selective binding of the aptamer to thrombin with precisely matched size to produce distinct RPS signals when passing through the orifice. Kinetic analysis of hAGT repair was studied. Meanwhile, the device shows the simultaneous on-demand infusion of inhibitors to inactivate the hAGT activity, indicative of its potential in drug screening for enhanced chemotherapy. This work provides a new paradigm for θ-nanopipette-based single-cell RPS of a DNA repair protein accompanied by drug evaluation.

[1]  A. Ivanov,et al.  Fabrication of electron tunneling probes for measuring single-protein conductance , 2023, Nature Protocols.

[2]  Hao Tang,et al.  Real-Time Monitoring of Exosomes Secretion from Single Cell Using Dual-Nanopore Biosensors. , 2023, ACS sensors.

[3]  Huaning Wang,et al.  Duplex Polymerization Strategy for General, Programmable and High-Resolution Nanopore Detection. , 2023, Angewandte Chemie.

[4]  Hongyuan Chen,et al.  An Integrated Dual-Functional Nanotool Capable of Studying Single-Cell Epigenetics and Programmable Gene Regulation. , 2023, Angewandte Chemie.

[5]  I. Willner,et al.  Optical and Electrochemical Probes for Monitoring Cytochrome c in Subcellular Compartments During Apoptosis. , 2023, Angewandte Chemie.

[6]  U. Keyser,et al.  Super‐Resolution Detection of DNA Nanostructures Using a Nanopore , 2023, Advanced materials.

[7]  Hao Tang,et al.  Development of Dual-Nanopore Biosensors for Detection of Intracellular Dopamine and Dopamine Efflux from Single PC12 Cell. , 2022, Analytical chemistry.

[8]  Ping Yu,et al.  Multi-Spatiotemporal Probing of Neurochemical Events by Advanced Electrochemical Sensing Methods. , 2022, Angewandte Chemie.

[9]  S. Radford,et al.  Probing RNA Conformations Using a Polymer–Electrolyte Solid-State Nanopore , 2022, ACS nano.

[10]  Hongyuan Chen,et al.  A Photoelectrochemical Nanoreactor for Single-Cell Sampling and Near Zero-Background Faradic Detection of Intracellular MicroRNA. , 2022, Angewandte Chemie.

[11]  Hongyuan Chen,et al.  Electrochemical Molecule Trap-Based Sensing of Low-Abundance Enzymes in One Living Cell. , 2022, Journal of the American Chemical Society.

[12]  Hongyuan Chen,et al.  Translocation of Specific DNA Nanocarrier through an Ultrasmall Nanopipette: Toward Single-Protein-Molecule Detection with Superior Signal-to-Noise Ratio. , 2022, ACS nano.

[13]  Wei Zhao,et al.  Chemical Measurement and Analysis: from Phenomenon to Essence , 2022, Chinese Journal of Chemistry.

[14]  Prithvijit Mukherjee,et al.  Deep Learning‐Assisted Automated Single Cell Electroporation Platform for Effective Genetic Manipulation of Hard‐to‐Transfect Cells (Small 20/2022) , 2022, Small.

[15]  R. Bindra,et al.  Mismatch repair proteins play a role in ATR activation upon temozolomide treatment in MGMT-methylated glioblastoma , 2022, Scientific Reports.

[16]  Peifeng Huang,et al.  Spatiotemporally Resolved Protein Detection in Live Cells Using Nanopore Biosensors. , 2022, ACS nano.

[17]  Jing Li,et al.  Identification of plasmon-driven nanoparticle-coalescence-dominated growth of gold nanoplates through nanopore sensing , 2022, Nature Communications.

[18]  A. Ewing,et al.  Quantifying Intracellular Single Vesicular Catecholamine Concentration with Open Carbon Nanopipettes to Unveil the Effect of L‐DOPA on Vesicular Structure , 2021, Angewandte Chemie.

[19]  E. McConnell,et al.  Digital immunoassay for biomarker concentration quantification using solid-state nanopores , 2021, Nature Communications.

[20]  Jian-hui Jiang,et al.  "Repaired and Activated" DNAzyme Enables the Monitoring of DNA Alkylation Repair in Live Cells. , 2021, Angewandte Chemie.

[21]  U. Keyser,et al.  Image Encoding Using Multi-Level DNA Barcodes with Nanopore Readout. , 2021, Small.

[22]  Yimin Yan,et al.  Ultrasensitive Nanopore Sensing of Mucin 1 and Circulating Tumor Cells in Whole Blood of Breast Cancer Patients by Analyte-Triggered Triplex-DNA Release. , 2021, ACS applied materials & interfaces.

[23]  Yongdong Jin,et al.  Glutathione Content Detection of Single Cells under Ingested Doxorubicin by Functionalized Glass Nanopores. , 2021, Analytical chemistry.

[24]  E. Carlon,et al.  Autonomous and Active Transport Operated by an Entropic DNA Piston , 2020, Nano letters.

[25]  H. Tian,et al.  High-preservation Single-cell Operation through a Photo-responsive Hydrogel-Nanopipette System. , 2020, Angewandte Chemie.

[26]  A. Ewing,et al.  Correlating Molecule Count and Release Kinetics with Vesicular Size Using Open Carbon Nanopipettes , 2020, Journal of the American Chemical Society.

[27]  C. Wälti,et al.  Rational design of DNA nanostructures for single molecule biosensing , 2020, Nature Communications.

[28]  Ping Yu,et al.  Real-time and in-situ intracellular ATP assay with polyimidazolium brush-modified nanopipette , 2020, Science China Chemistry.

[29]  Ulrich F. Keyser,et al.  Nanopore-Based DNA Hard Drives for Rewritable and Secure Data Storage. , 2020, Nano letters.

[30]  D. Klenerman,et al.  High-resolution label-free 3D mapping of extracellular pH of single living cells , 2019, Nature Communications.

[31]  F. Möller,et al.  A DNA-Based Biosensor Assay for the Kinetic Characterization of Ion-Dependent Aptamer Folding and Protein Binding , 2019, Molecules.

[32]  Y. Long,et al.  Confined Nanopipette Sensing: From Single Molecules, Single Nanoparticles, to Single Cells. , 2019, Angewandte Chemie.

[33]  Michael J. Devine,et al.  Nanoscale tweezers for single-cell biopsies , 2018, Nature Nanotechnology.

[34]  Wei Zhao,et al.  Ultrasmall Nanopipette: Toward Continuous Monitoring of Redox Metabolism at Subcellular Level. , 2018, Angewandte Chemie.

[35]  K. Ino,et al.  Evaluation of mRNA Localization Using Double Barrel Scanning Ion Conductance Microscopy. , 2016, ACS nano.

[36]  T. Matsue,et al.  Spearhead Nanometric Field-Effect Transistor Sensors for Single-Cell Analysis. , 2016, ACS nano.

[37]  Rıfat Emrah Özel,et al.  Single Cell "Glucose Nanosensor" Verifies Elevated Glucose Levels in Individual Cancer Cells. , 2016, Nano letters.

[38]  G. Reifenberger,et al.  MGMT testing—the challenges for biomarker-based glioma treatment , 2014, Nature Reviews Neurology.

[39]  Ramon Eritja,et al.  DNA origami as a DNA repair nanosensor at the single-molecule level. , 2013, Angewandte Chemie.

[40]  L. Samson,et al.  Balancing repair and tolerance of DNA damage caused by alkylating agents , 2012, Nature Reviews Cancer.

[41]  M. Christmann,et al.  O(6)-Methylguanine-DNA methyltransferase (MGMT) in normal tissues and tumors: enzyme activity, promoter methylation and immunohistochemistry. , 2011, Biochimica et biophysica acta.

[42]  Ronald W Davis,et al.  Label-free biosensing with functionalized nanopipette probes , 2009, Proceedings of the National Academy of Sciences.

[43]  François O. Laforge,et al.  Nanoelectrochemistry of mammalian cells , 2008, Proceedings of the National Academy of Sciences.

[44]  Antoine M. van Oijen,et al.  Ever-fluctuating single enzyme molecules: Michaelis-Menten equation revisited , 2006, Nature chemical biology.

[45]  Kang Wang,et al.  A Multiparameter pH‐Sensitive Nanodevice Based on Plasmonic Nanopores , 2018 .

[46]  Yalin Tang,et al.  Thrombin Ultrasensitive Detection Based on Chiral Supramolecular Assembly Signal-Amplified Strategy Induced by Thrombin-Binding Aptamer. , 2017, Analytical chemistry.