Exploring the Spectrum of Kidney Ciliopathies

Ciliopathies are a group of multi-organ diseases caused by the disruption of the primary cilium. This event leads to a variety of kidney disorders, including nephronophthisis, renal cystic dysplasia, and renal cell carcinoma (RCC). Primary cilium contributes to the regulation of the cell cycle and protein homeostasis, that is, the balance between protein synthesis and degradation by acting on the ubiquitin-proteasome system, autophagy, and mTOR signaling. Many proteins are involved in renal ciliopathies. In particular, fibrocystin (PKHD1) is involved in autosomal recessive polycystic kidney disease (ARPKD), while polycystin-1 (PKD1) and polycystin-2 (PKD2) are implicated in autosomal dominant polycystic kidney disease (ADPKD). Moreover, primary cilia are associated with essential signaling pathways, such as Hedgehog, Wnt, and Platelet-Derived Growth Factor (PDGF). In this review, we focused on the ciliopathies associated with kidney diseases, exploring genes and signaling pathways associated with primary cilium and the potential role of cilia as therapeutic targets in renal disorders.

[1]  G. Capasso,et al.  [Application of proteomics and metabolomics to study inherited kidney disorders: from big data to precision medicine]. , 2020, Giornale italiano di nefrologia : organo ufficiale della Societa italiana di nefrologia.

[2]  R. Redon,et al.  A BBS1 SVA F retrotransposon insertion is a frequent cause of Bardet‐Biedl syndrome , 2020, Clinical genetics.

[3]  A. Mallett,et al.  Ciliopathies and the Kidney: A Review. , 2020, American journal of kidney diseases : the official journal of the National Kidney Foundation.

[4]  F. Piva,et al.  Role of primary cilium in pancreatic ductal adenocarcinoma (Review). , 2020, International journal of oncology.

[5]  A. Jana,et al.  Joubert syndrome. , 2020, Indian pediatrics.

[6]  T. McMorrow,et al.  Primary cilia and their role in cancer , 2019, Oncology letters.

[7]  Fenglan Luo,et al.  Nephronophthisis: A review of genotype–phenotype correlation , 2018, Nephrology.

[8]  S. Somlo,et al.  Monoallelic Mutations to DNAJB11 Cause Atypical Autosomal-Dominant Polycystic Kidney Disease. , 2018, American journal of human genetics.

[9]  J. Hancock,et al.  Signaling through the Primary Cilium , 2018, Front. Cell Dev. Biol..

[10]  Colin A. Johnson,et al.  Meckel–Gruber Syndrome: An Update on Diagnosis, Clinical Management, and Research Advances , 2017, Front. Pediatr..

[11]  S. Nauli,et al.  Primary Cilium-Dependent Signaling Mechanisms , 2017, International journal of molecular sciences.

[12]  A. Perkins,et al.  Mutations in DZIP1L, which encodes a ciliary-transition-zone protein, cause autosomal recessive polycystic kidney disease , 2017, Nature Genetics.

[13]  Colin A. Johnson,et al.  The Cilium: Cellular Antenna and Central Processing Unit , 2017, Trends in cell biology.

[14]  V. Torres,et al.  Autosomal Dominant Polycystic Kidney Disease: Core Curriculum 2016. , 2016, American journal of kidney diseases : the official journal of the National Kidney Foundation.

[15]  T. Watnick,et al.  The Polycystin complex mediates WNT/Ca2+ signaling , 2016, Nature Cell Biology.

[16]  Laurie A. Smith,et al.  Reduction of ciliary length through pharmacologic or genetic inhibition of CDK5 attenuates polycystic kidney disease in a model of nephronophthisis , 2016, Human molecular genetics.

[17]  M. Inagaki,et al.  Ndel1 suppresses ciliogenesis in proliferating cells by regulating the trichoplein–Aurora A pathway , 2016, The Journal of cell biology.

[18]  Kaleab Z. Abebe,et al.  Predicted Mutation Strength of Nontruncating PKD1 Mutations Aids Genotype-Phenotype Correlations in Autosomal Dominant Polycystic Kidney Disease. , 2016, Journal of the American Society of Nephrology : JASN.

[19]  R. Montironi,et al.  Metabolic alterations in renal cell carcinoma. , 2015, Cancer treatment reviews.

[20]  R. Montironi,et al.  Computational analysis of the mutations in BAP1, PBRM1 and SETD2 genes reveals the impaired molecular processes in renal cell carcinoma , 2015, Oncotarget.

[21]  F. Montorsi,et al.  Re: epithelial-to-mesenchymal transition in renal neoplasms. , 2015, European urology.

[22]  L. Tsiokas,et al.  Cell cycle‐dependent ubiquitylation and destruction of NDE1 by CDK5‐FBW7 regulates ciliary length , 2015, The EMBO journal.

[23]  A. Lopez‐Beltran,et al.  BAP1, PBRM1 and SETD2 in clear-cell renal cell carcinoma: molecular diagnostics and possible targets for personalized therapies , 2015, Expert review of molecular diagnostics.

[24]  K. Dell The role of cilia in the pathogenesis of cystic kidney disease , 2015, Current opinion in pediatrics.

[25]  Ajay V. Srivastava,et al.  Autosomal dominant polycystic kidney disease. , 2014, American family physician.

[26]  N. Knoers,et al.  Current insights into renal ciliopathies: what can genetics teach us? , 2012, Pediatric Nephrology.

[27]  N. Grishin,et al.  BAP1 loss defines a new class of renal cell carcinoma , 2012, Nature Genetics.

[28]  S. Sultana,et al.  Role of VHL gene mutation in human renal cell carcinoma , 2012, Tumor Biology.

[29]  P. Jennings,et al.  Carcinogens induce loss of the primary cilium in human renal proximal tubular epithelial cells independently of effects on the cell cycle. , 2012, American journal of physiology. Renal physiology.

[30]  J. Gleeson,et al.  Modeling Human Disease in Humans: The Ciliopathies , 2011, Cell.

[31]  A. Ekici,et al.  NEK1 mutations cause short-rib polydactyly syndrome type majewski. , 2011, American journal of human genetics.

[32]  P. Beales,et al.  Ciliopathies: an expanding disease spectrum , 2011, Pediatric Nephrology.

[33]  R. Serra,et al.  Primary Cilia Are Decreased in Breast Cancer: Analysis of a Collection of Human Breast Cancer Cell Lines and Tissues , 2010, The journal of histochemistry and cytochemistry : official journal of the Histochemistry Society.

[34]  P. Swoboda,et al.  Regulatory Factor X (RFX)-mediated transcriptional rewiring of ciliary genes in animals , 2010, Proceedings of the National Academy of Sciences.

[35]  R. Hennekam,et al.  Cranioectodermal Dysplasia, Sensenbrenner syndrome, is a ciliopathy caused by mutations in the IFT122 gene. , 2010, American journal of human genetics.

[36]  Peter Satir,et al.  The primary cilium at a glance , 2010, Journal of Cell Science.

[37]  Olivier Arnaiz,et al.  Cildb: a knowledgebase for centrosomes and cilia , 2009, Database J. Biol. Databases Curation.

[38]  Madeline A. Lancaster,et al.  Impaired Wnt–β-catenin signaling disrupts adult renal homeostasis and leads to cystic kidney ciliopathy , 2009, Nature Medicine.

[39]  J. Reiter,et al.  Primary cilia can both mediate and suppress Hedgehog pathway–dependent tumorigenesis , 2009, Nature Medicine.

[40]  Carolyn M Hutter,et al.  CC2D2A is mutated in Joubert syndrome and interacts with the ciliopathy-associated basal body protein CEP290. , 2008, American journal of human genetics.

[41]  Colin A. Johnson,et al.  Jouberin localizes to collecting ducts and interacts with nephrocystin-1. , 2008, Kidney international.

[42]  Sophie Saunier,et al.  Nephronophthisis , 2008, Pediatric Nephrology.

[43]  B. Yoder,et al.  Role of primary cilia in the pathogenesis of polycystic kidney disease. , 2007, Journal of the American Society of Nephrology : JASN.

[44]  Christian Bréchot,et al.  The intraflagellar transport component IFT88/polaris is a centrosomal protein regulating G1-S transition in non-ciliated cells , 2007, Journal of Cell Science.

[45]  H. Zentgraf,et al.  The von Hippel-Lindau tumor suppressor protein controls ciliogenesis by orienting microtubule growth , 2006, The Journal of cell biology.

[46]  E. Bertini,et al.  Nephronophthisis type 1 deletion syndrome with neurological symptoms: prevalence and significance of the association. , 2006, Kidney international.

[47]  Adrian Gherman,et al.  The ciliary proteome database: an integrated community resource for the genetic and functional dissection of cilia , 2006, Nature Genetics.

[48]  Keith A. Boroevich,et al.  Piecing together a ciliome. , 2006, Trends in genetics : TIG.

[49]  R. Burk,et al.  Primary cilium formation requires von hippel-lindau gene function in renal-derived cells. , 2006, Cancer research.

[50]  M. Tran,et al.  Formation of primary cilia in the renal epithelium is regulated by the von Hippel-Lindau tumor suppressor protein. , 2006, Journal of the American Society of Nephrology : JASN.

[51]  E. Avner,et al.  Molecular and cellular pathophysiology of autosomal recessive polycystic kidney disease (ARPKD) , 2006, Cell and Tissue Research.

[52]  S. Fisher,et al.  Dissection of epistasis in oligogenic Bardet–Biedl syndrome , 2006, Nature.

[53]  L. Peltonen,et al.  MKS1, encoding a component of the flagellar apparatus basal body proteome, is mutated in Meckel syndrome , 2006, Nature Genetics.

[54]  Peter Satir,et al.  PDGFRαα Signaling Is Regulated through the Primary Cilium in Fibroblasts , 2005, Current Biology.

[55]  O. A. Cabello,et al.  Inversin, the gene product mutated in nephronophthisis type II, functions as a molecular switch between Wnt signaling pathways , 2005, Nature Genetics.

[56]  W. Kaelin,et al.  Role of VHL gene mutation in human cancer. , 2004, Journal of clinical oncology : official journal of the American Society of Clinical Oncology.

[57]  E. Voest,et al.  The von Hippel-Lindau tumor suppressor protein influences microtubule dynamics at the cell periphery. , 2004, Experimental cell research.

[58]  Keith A. Boroevich,et al.  Mutations in a member of the Ras superfamily of small GTP-binding proteins causes Bardet-Biedl syndrome , 2004, Nature Genetics.

[59]  Edwin M Stone,et al.  Comparative genomic analysis identifies an ADP-ribosylation factor-like gene as the cause of Bardet-Biedl syndrome (BBS3). , 2004, American journal of human genetics.

[60]  Tanya M. Teslovich,et al.  Comparative Genomics Identifies a Flagellar and Basal Body Proteome that Includes the BBS5 Human Disease Gene , 2004, Cell.

[61]  R. Coffey,et al.  PKHD1 protein encoded by the gene for autosomal recessive polycystic kidney disease associates with basal bodies and primary cilia in renal epithelial cells. , 2004, Proceedings of the National Academy of Sciences of the United States of America.

[62]  Lee Niswander,et al.  Hedgehog signalling in the mouse requires intraflagellar transport proteins , 2003, Nature.

[63]  N. LaRusso,et al.  Cellular and subcellular localization of the ARPKD protein; fibrocystin is expressed on primary cilia. , 2003, Human molecular genetics.

[64]  J. Bonifacino,et al.  Germline mutations in PRKCSH are associated with autosomal dominant polycystic liver disease , 2003, Nature Genetics.

[65]  Jing Zhou,et al.  Polycystins 1 and 2 mediate mechanosensation in the primary cilium of kidney cells , 2003, Nature Genetics.

[66]  L. Guay-Woodford,et al.  The polycystic kidney disease proteins, polycystin-1, polycystin-2, polaris, and cystin, are co-localized in renal cilia. , 2002, Journal of the American Society of Nephrology : JASN.

[67]  G. Pazour,et al.  Chlamydomonas IFT88 and Its Mouse Homologue, Polycystic Kidney Disease Gene Tg737, Are Required for Assembly of Cilia and Flagella , 2000, The Journal of cell biology.

[68]  J. Thomas,et al.  The RFX-type transcription factor DAF-19 regulates sensory neuron cilium formation in C. elegans. , 2000, Molecular cell.

[69]  F. Hildebrandt,et al.  A novel gene encoding an SH3 domain protein is mutated in nephronophthisis type 1 , 1997, Nature Genetics.

[70]  G. Hitman,et al.  Bardet-Biedl syndrome: a molecular and phenotypic study of 18 families. , 1997, Journal of medical genetics.

[71]  G. Piperno,et al.  Analysis of Mutants One-or Two-dimensional Electrophoresis of Polypeptides Antiserum-agarose Overlay on Polyacrylamide Gels Description of the Mutant Strains , 2022 .

[72]  S. Mane,et al.  Isolated polycystic liver disease genes define effectors of polycystin-1 function. , 2017, The Journal of clinical investigation.

[73]  E. Voest,et al.  Allele-specific regulation of primary cilia function by the von Hippel–Lindau tumor suppressor , 2008, European Journal of Human Genetics.

[74]  J. García Rodríguez,et al.  [Polycystic Kidney Disease]. , 2005, Actas urologicas espanolas.

[75]  V. Sheffield,et al.  Mutations in MKKS cause Bardet-Biedl syndrome , 2001, Nature Genetics.