Tetrahedral Image-to-Mesh Conversion Approaches for Surgery Simulation and Navigation

In this paper we evaluate three different mesh generation approaches with respect to their fitness for use in a surgery simulation and navigation system. The behavior of such a system can be thought of as a trade-off between material fidelity and computation time. We focus on one critical component of this system, namely non-rigid registration, and conduct an experimental study of the selected mesh generation approaches with respect to material fidelity of the resulting meshes, shape of mesh elements, condition number of the resulting stiffness matrix, and the registration error. We concluded that meshes with very bad fidelity do not affect the accuracy drastically. On the contrary, meshes with very good fidelity hurt the speed of the mesher due to the poor quality they exhibit. We also observed that the speed of the solver is very sensitive to mesh quality rather than to fidelity. For these reasons, we think that mesh generation should first try to produce high quality meshes, possibly sacrificing fidelity.

[1]  Suzanne M. Shontz Proceedings of the 19th International Meshing Roundtable , 2010 .

[2]  J. Shewchuk,et al.  Isosurface stuffing: fast tetrahedral meshes with good dihedral angles , 2007, SIGGRAPH 2007.

[3]  Pierre Alliez,et al.  Computational geometry algorithms library , 2008, SIGGRAPH '08.

[4]  Frithjof Kruggel,et al.  A fast algorithm for generating large tetrahedral 3D finite element meshes from magnetic resonance tomograms , 1998, Proceedings. Workshop on Biomedical Image Analysis (Cat. No.98EX162).

[5]  M. Ferrant Physics-based Deformable Modeling of Volumes and Surfaces for Medical Image Registration, Segmentation and Visualization , 2001 .

[6]  Hervé Delingette,et al.  Robust nonrigid registration to capture brain shift from intraoperative MRI , 2005, IEEE Transactions on Medical Imaging.

[7]  Paul A. Yushkevich,et al.  Deformable M-Reps for 3D Medical Image Segmentation , 2003, International Journal of Computer Vision.

[8]  M. Yvinec,et al.  Meshing Volumes Bounded by Smooth Surfaces , 2005, IMR.

[9]  Herbert Edelsbrunner,et al.  Sliver exudation , 2000, J. ACM.

[10]  Nicholas Ayache Computational Models for the Human Body , 2004 .

[11]  T. Rabczuk,et al.  Three-dimensional crack initiation, propagation, branching and junction in non-linear materials by an extended meshfree method without asymptotic enrichment , 2008 .

[12]  Rao V. Garimella,et al.  Proceedings of the 17th International Meshing Roundtable , 2008 .

[13]  Pierre Alliez,et al.  Perturbing Slivers in 3D Delaunay Meshes , 2009, IMR.

[14]  Andrey N. Chernikov,et al.  Mesh deformation-based multi-tissue mesh generation for brain images , 2012, Engineering with Computers.

[15]  Steve Oudot,et al.  Provably good sampling and meshing of surfaces , 2005, Graph. Model..

[16]  Hervé Delingette,et al.  Soft Tissue Modeling for Surgery Simulation , 2004 .

[17]  Rhonald C. Lua,et al.  Image-based finite element mesh construction for material microstructures , 2008 .

[18]  Yusheng Feng,et al.  Using Cyber-Infrastructure for Dynamic Data Driven Laser Treatment of Cancer , 2007, International Conference on Computational Science.

[19]  Ricardo H. Nochetto,et al.  A Variational Shape Optimization Approach for Image Segmentation with a Mumford--Shah Functional , 2008, SIAM J. Sci. Comput..

[20]  Herbert Edelsbrunner,et al.  Sliver exudation , 1999, SCG '99.

[21]  Jonathan Richard Shewchuk,et al.  Triangle: Engineering a 2D Quality Mesh Generator and Delaunay Triangulator , 1996, WACG.

[22]  Andrey N. Chernikov,et al.  Multi-tissue Mesh Generation for Brain Images , 2010, IMR.

[23]  Laurent Rineau,et al.  Meshing 3D Domains Bounded by Piecewise Smooth Surfaces* , 2007, IMR.

[24]  Brett W. Clark,et al.  Proceedings of the 18th International Meshing Roundtable , 2009 .

[25]  Olivier Clatz,et al.  Non-rigid alignment of pre-operative MRI, fMRI, and DT-MRI with intra-operative MRI for enhanced visualization and navigation in image-guided neurosurgery , 2007, NeuroImage.

[26]  Andriy Fedorov,et al.  Tetrahedral Mesh Generation for Non-rigid Registration of Brain MRI: Analysis of the Requirements and Evaluation of Solutions , 2008, IMR.

[27]  Jonathan Richard Shewchuk,et al.  What is a Good Linear Element? Interpolation, Conditioning, and Quality Measures , 2002, IMR.

[28]  Hang Si,et al.  TetGen: A quality tetrahedral mesh generator and a 3D Delaunay triangulator (Version 1.5 --- User's Manual) , 2013 .

[29]  Robert Schneiders,et al.  Quadrilateral and Hexahedral Element Meshes , 2002 .

[30]  Ronald Fedkiw,et al.  A Crystalline, Red Green Strategy for Meshing Highly Deformable Objects with Tetrahedra , 2003, IMR.

[31]  Andrey N. Chernikov,et al.  Guaranteed Quality Tetrahedral Delaunay Meshing for Medical Images , 2010, 2010 International Symposium on Voronoi Diagrams in Science and Engineering.

[32]  Bharat K. Soni,et al.  Handbook of Grid Generation , 1998 .

[33]  Orcun Goksel,et al.  Image-Based Variational Meshing , 2011, IEEE Transactions on Medical Imaging.

[34]  D. White,et al.  6th International Meshing Roundtable '97 , 1997 .

[35]  Dinesh Manocha,et al.  Applied Computational Geometry Towards Geometric Engineering , 1996, Lecture Notes in Computer Science.

[36]  Yongjie Zhang,et al.  3D Finite Element Meshing from Imaging Data. , 2005, Computer methods in applied mechanics and engineering.