Macromolecular crowding develops heterogeneous environments of gene expression in picoliter droplets

[1]  Tetsuya Yomo,et al.  Stochasticity in gene expression in a cell-sized compartment. , 2015, ACS synthetic biology.

[2]  A. Minton How can biochemical reactions within cells differ from those in test tubes? , 2015, Journal of Cell Science.

[3]  E. Winfree,et al.  Diversity in the dynamical behaviour of a compartmentalized programmable biochemical oscillator. , 2014, Nature chemistry.

[4]  Linda R Petzold,et al.  Validity conditions for stochastic chemical kinetics in diffusion-limited systems. , 2014, The Journal of chemical physics.

[5]  C. O’Hern,et al.  The Bacterial Cytoplasm Has Glass-like Properties and Is Fluidized by Metabolic Activity , 2014, Cell.

[6]  T. Hwa,et al.  Molecular crowding limits translation and cell growth , 2013, Proceedings of the National Academy of Sciences.

[7]  H. Heus,et al.  Enhanced transcription rates in membrane-free protocells formed by coacervation of cell lysate , 2013, Proceedings of the National Academy of Sciences.

[8]  M. L. Simpson,et al.  Probing cell-free gene expression noise in femtoliter volumes. , 2013, ACS synthetic biology.

[9]  Haidong Feng,et al.  Stochastic expression dynamics of a transcription factor revealed by single-molecule noise analysis , 2012, Nature Structural &Molecular Biology.

[10]  R. Zimmer,et al.  Experiment and mathematical modeling of gene expression dynamics in a cell-free system. , 2012, Integrative biology : quantitative biosciences from nano to macro.

[11]  A. van Oudenaarden,et al.  Using Gene Expression Noise to Understand Gene Regulation , 2012, Science.

[12]  Michael J. Mlodzianoski,et al.  Probing Spatial Organization of mRNA in Bacterial Cells using 3D Super-Resolution Microscopy , 2012 .

[13]  Dan Luo,et al.  Cell-Free Protein Expression under Macromolecular Crowding Conditions , 2011, PloS one.

[14]  J. Ellenberg,et al.  Stochastic State Transitions Give Rise to Phenotypic Equilibrium in Populations of Cancer Cells , 2011, Cell.

[15]  Johan Paulsson,et al.  Separating intrinsic from extrinsic fluctuations in dynamic biological systems , 2011, Proceedings of the National Academy of Sciences.

[16]  O. Sliusarenko,et al.  Spatial organization of the flow of genetic information in bacteria , 2010, Nature.

[17]  Wilhelm T S Huck,et al.  Simultaneous determination of gene expression and enzymatic activity in individual bacterial cells in microdroplet compartments. , 2009, Journal of the American Chemical Society.

[18]  A. Hyman,et al.  Germline P Granules Are Liquid Droplets That Localize by Controlled Dissolution/Condensation , 2009, Science.

[19]  Julio O. Ortiz,et al.  The Native 3D Organization of Bacterial Polysomes , 2009, Cell.

[20]  M. Elowitz,et al.  Regulatory activity revealed by dynamic correlations in gene expression noise , 2008, Nature Genetics.

[21]  T. Graf,et al.  Heterogeneity of embryonic and adult stem cells. , 2008, Cell stem cell.

[22]  V. Shahrezaei,et al.  The stochastic nature of biochemical networks. , 2008, Current opinion in biotechnology.

[23]  Hannah H. Chang,et al.  Transcriptome-wide noise controls lineage choice in mammalian progenitor cells , 2008, Nature.

[24]  Jerome T. Mettetal,et al.  Stochastic switching as a survival strategy in fluctuating environments , 2008, Nature Genetics.

[25]  Daniel Bratton,et al.  An Integrated Device for Monitoring Time‐Dependent in vitro Expression From Single Genes in Picolitre Droplets , 2008, Chembiochem : a European journal of chemical biology.

[26]  J. Paulsson,et al.  Effects of Molecular Memory and Bursting on Fluctuations in Gene Expression , 2008, Science.

[27]  D. Dubnau,et al.  Noise in Gene Expression Determines Cell Fate in Bacillus subtilis , 2007, Science.

[28]  Ertugrul M. Ozbudak,et al.  Predicting stochastic gene expression dynamics in single cells. , 2006, Proceedings of the National Academy of Sciences of the United States of America.

[29]  Jeroen S. van Zon,et al.  Diffusion of transcription factors can drastically enhance the noise in gene expression. , 2006, Biophysical journal.

[30]  X. Xie,et al.  Probing Gene Expression in Live Cells, One Protein Molecule at a Time , 2006, Science.

[31]  Sanjay Tyagi,et al.  Mechanism of mRNA transport in the nucleus. , 2005, Proceedings of the National Academy of Sciences of the United States of America.

[32]  D. Volfson,et al.  Delay-induced stochastic oscillations in gene regulation. , 2005, Proceedings of the National Academy of Sciences of the United States of America.

[33]  Jared E. Toettcher,et al.  Stochastic Gene Expression in a Lentiviral Positive-Feedback Loop: HIV-1 Tat Fluctuations Drive Phenotypic Diversity , 2005, Cell.

[34]  Steven Chu,et al.  tRNA dynamics on the ribosome during translation. , 2004, Proceedings of the National Academy of Sciences of the United States of America.

[35]  J. Raser,et al.  Control of Stochasticity in Eukaryotic Gene Expression , 2004, Science.

[36]  J. Paulsson Summing up the noise in gene networks , 2004, Nature.

[37]  P. Swain,et al.  Intrinsic and extrinsic contributions to stochasticity in gene expression , 2002, Proceedings of the National Academy of Sciences of the United States of America.

[38]  Ertugrul M. Ozbudak,et al.  Regulation of noise in the expression of a single gene , 2002, Nature Genetics.

[39]  R.John Ellis,et al.  Macromolecular crowding: obvious but underappreciated. , 2001, Trends in biochemical sciences.

[40]  D I Svergun,et al.  A Map of Protein-rRNA Distribution in the 70 SEscherichia coli Ribosome* , 2000, The Journal of Biological Chemistry.

[41]  M. Elowitz,et al.  A synthetic oscillatory network of transcriptional regulators , 2000, Nature.

[42]  A S Belmont,et al.  In vivo localization of DNA sequences and visualization of large-scale chromatin organization using lac operator/repressor recognition , 1996, The Journal of cell biology.

[43]  S. Zimmerman,et al.  Macromolecular crowding increases binding of DNA polymerase to DNA: an adaptive effect. , 1987, Proceedings of the National Academy of Sciences of the United States of America.

[44]  Jeffrey W. Smith,et al.  Stochastic Gene Expression in a Single Cell , 2022 .