Potential genomic determinants of hyperthermophily.

[1]  P. Bork,et al.  Non-orthologous gene displacement. , 1996, Trends in genetics : TIG.

[2]  Thomas L. Madden,et al.  Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. , 1997, Nucleic acids research.

[3]  R. Overbeek,et al.  A reconstruction of the metabolism of Methanococcus jannaschii from sequence data. , 1997, Gene.

[4]  D. Lipman,et al.  A genomic perspective on protein families. , 1997, Science.

[5]  T Gaasterland,et al.  Microbial genescapes: a prokaryotic view of the yeast genome. , 1998, Microbial & comparative genomics.

[6]  C. Johnson,et al.  Expression of a gene cluster kaiABC as a circadian feedback process in cyanobacteria. , 1998, Science.

[7]  E V Koonin,et al.  DNA polymerase beta-like nucleotidyltransferase superfamily: identification of three new families, classification and evolutionary history. , 1999, Nucleic acids research.

[8]  D. Eisenberg,et al.  Assigning protein functions by comparative genome analysis: protein phylogenetic profiles. , 1999, Proceedings of the National Academy of Sciences of the United States of America.

[9]  E. Koonin,et al.  Gleaning non-trivial structural, functional and evolutionary information about proteins by iterative database searches. , 1999, Journal of molecular biology.

[10]  N. Risch.  Searching for genetic determinants in the new millennium , 2000, Nature.

[11]  A. Smit,et al.  Biosynthesis of isoprenoids via mevalonate in Archaea: the lost pathway. , 2000, Genome research.

[12]  E. Lander,et al.  ARSACS, a spastic ataxia common in northeastern Québec, is caused by mutations in a new gene encoding an 11.5-kb ORF , 2000, Nature Genetics.

[13]  L. Aravind.  Guilt by association: contextual information in genome analysis. , 2000, Genome research.

[14]  B. Snel,et al.  Gene and context: integrative approaches to genome analysis. , 2000, Advances in protein chemistry.

[15]  Michael Y. Galperin,et al.  Who's your neighbor? New computational approaches for functional genomics , 2000, Nature Biotechnology.

[16]  C. Vieille,et al.  Hyperthermophilic Enzymes: Sources, Uses, and Molecular Mechanisms for Thermostability , 2001, Microbiology and Molecular Biology Reviews.

[17]  E. Koonin,et al.  Horizontal gene transfer in prokaryotes: quantification and classification. , 2001, Annual review of microbiology.

[18]  E V Koonin,et al.  Lineage-specific gene expansions in bacterial and archaeal genomes. , 2001, Genome research.

[19]  S. P. Fodor,et al.  Blocks of Limited Haplotype Diversity Revealed by High-Resolution Scanning of Human Chromosome 21 , 2001, Science.

[20]  R. Sterner,et al.  Thermophilic Adaptation of Proteins , 2001, Critical reviews in biochemistry and molecular biology.

[21]  M. Ragan.  Detection of lateral gene transfer among microbial genomes. , 2001, Current opinion in genetics & development.

[22]  E. Koonin,et al.  Genome alignment, evolution of prokaryotic genome organization, and prediction of gene function using genomic context. , 2001, Genome research.

[23]  J. Broderick,et al.  Adenosylmethionine-dependent iron-sulfur enzymes: versatile clusters in a radical new role , 2001, JBIC Journal of Biological Inorganic Chemistry.

[24]  Michael Y. Galperin,et al.  The COG database: new developments in phylogenetic classification of proteins from complete genomes , 2001, Nucleic Acids Res..

[25]  D. Stock,et al.  Crystal structure of reverse gyrase: insights into the positive supercoiling of DNA , 2002, The EMBO journal.

[26]  Eviatar Nevo,et al.  Long-term microclimatic stress causes rapid adaptive radiation of kaiABC clock gene family in a cyanobacterium, Nostoc linckia, from “Evolution Canyons” I and II, Israel , 2002, Proceedings of the National Academy of Sciences of the United States of America.

[27]  Scott T. Weiss,et al.  Genetics: Inherit the wheeze , 2002, Nature.

[28]  B. Snel,et al.  Genomes in flux: the evolution of archaeal and proteobacterial gene content. , 2002, Genome research.

[29]  Patrick Forterre,et al.  A hot story from comparative genomics: reverse gyrase is the only hyperthermophile-specific protein. , 2002, Trends in genetics : TIG.

[30]  R. Pitchappan,et al.  A region of chromosome 20 is linked to leprosy susceptibility in a South Indian population. , 2002, The Journal of infectious diseases.

[31]  Darren A. Natale,et al.  The complete genome of hyperthermophile Methanopyrus kandleri AV19 and monophyly of archaeal methanogens , 2002, Proceedings of the National Academy of Sciences of the United States of America.

[32]  Nick V Grishin,et al.  A DNA repair system specific for thermophilic Archaea and bacteria predicted by genomic context analysis. , 2002, Nucleic acids research.

[33]  Michael Y. Galperin,et al.  Sequence — Evolution — Function , 2003, Springer US.