Regulatory crosstalk of the metabolic network.
暂无分享,去创建一个
[1] Hanna Y. Irie,et al. Antioxidant and oncogene rescue of metabolic defects caused by loss of matrix attachment , 2009, Nature.
[2] J. Pronk,et al. When transcriptome meets metabolome: fast cellular responses of yeast to sudden relief of glucose limitation , 2006, Molecular systems biology.
[3] C. Grant,et al. Differential Protein S-Thiolation of Glyceraldehyde-3-Phosphate Dehydrogenase Isoenzymes Influences Sensitivity to Oxidative Stress , 1999, Molecular and Cellular Biology.
[4] A. Wagner. Robustness and Evolvability in Living Systems , 2005 .
[5] Mohammad M. Ataai,et al. Pyruvate Kinase-Deficient Escherichia coli Exhibits Increased Plasmid Copy Number and Cyclic AMP Levels , 2009, Journal of bacteriology.
[6] Justin R. Cross,et al. ATP-Citrate Lyase Links Cellular Metabolism to Histone Acetylation , 2009, Science.
[7] T. Henkin. Riboswitch RNAs: using RNA to sense cellular metabolism. , 2008, Genes & development.
[8] Y. Fujita. Carbon Catabolite Control of the Metabolic Network in Bacillus subtilis , 2009, Bioscience, biotechnology, and biochemistry.
[9] C. Grant,et al. Protein S-thiolation targets glycolysis and protein synthesis in response to oxidative stress in the yeast Saccharomyces cerevisiae. , 2003, The Biochemical journal.
[10] B. Daignan-Fornier,et al. Metabolic intermediates selectively stimulate transcription factor interaction and modulate phosphate and purine pathways. , 2009, Genes & development.
[11] W. Ying. NAD+/NADH and NADP+/NADPH in cellular functions and cell death: regulation and biological consequences. , 2008, Antioxidants & redox signaling.
[12] A. Kudlicki,et al. Logic of the Yeast Metabolic Cycle: Temporal Compartmentalization of Cellular Processes , 2005, Science.
[13] Kara Dolinski,et al. Homeostatic adjustment and metabolic remodeling in glucose-limited yeast cultures. , 2005, Molecular biology of the cell.
[14] R. Breaker,et al. Regulation of bacterial gene expression by riboswitches. , 2005, Annual review of microbiology.
[15] A. Vera-López,et al. Global Self-Organization of the Cellular Metabolic Structure , 2008, PloS one.
[16] B. Kemp,et al. AMPK in Health and Disease. , 2009, Physiological reviews.
[17] S. Shen-Orr,et al. Network motifs in the transcriptional regulation network of Escherichia coli , 2002, Nature Genetics.
[18] J. Nielsen,et al. Uncovering transcriptional regulation of metabolism by using metabolic network topology. , 2005, Proceedings of the National Academy of Sciences of the United States of America.
[19] Hans Lehrach,et al. Metabolic reconfiguration precedes transcriptional regulation in the antioxidant response , 2009, Nature Biotechnology.
[20] D. Hoyle,et al. Growth control of the eukaryote cell: a systems biology study in yeast , 2007, Journal of biology.
[21] M. Reuss,et al. In vivo analysis of glucose-induced fast changes in yeast adenine nucleotide pool applying a rapid sampling technique. , 1993, Analytical biochemistry.
[22] H. Lehrach,et al. Interfering with Glycolysis Causes Sir2-Dependent Hyper-Recombination of Saccharomyces cerevisiae Plasmids , 2009, PloS one.
[23] S. West,et al. Poly(ADP-ribose)–Dependent Regulation of DNA Repair by the Chromatin Remodeling Enzyme ALC1 , 2009, Science.
[24] Juan Miranda-Ríos,et al. The THI-box riboswitch, or how RNA binds thiamin pyrophosphate. , 2007, Structure.
[25] M. Hall,et al. TOR Signaling in Growth and Metabolism , 2006, Cell.
[26] G. Fink,et al. Calorie restriction extends Saccharomyces cerevisiae lifespan by increasing respiration , 2002, Nature.
[27] Uri Alon,et al. Varying environments can speed up evolution , 2007, Proceedings of the National Academy of Sciences.
[28] D. Koller,et al. Activity motifs reveal principles of timing in transcriptional control of the yeast metabolic network , 2008, Nature Biotechnology.
[29] J. Buhler,et al. The H2O2 Stimulon in Saccharomyces cerevisiae * , 1998, The Journal of Biological Chemistry.
[30] George A. Brooks,et al. Lactate sensitive transcription factor network in L6 cells: activation of MCT1 and mitochondrial biogenesis , 2007, FASEB journal : official publication of the Federation of American Societies for Experimental Biology.
[31] U. Sauer,et al. Metabolic functions of duplicate genes in Saccharomyces cerevisiae. , 2005, Genome research.
[32] R. Rossignol,et al. Mitochondria: from bioenergetics to the metabolic regulation of carcinogenesis. , 2009, Frontiers in bioscience.
[33] M. Ziegler,et al. The power to reduce: pyridine nucleotides--small molecules with a multitude of functions. , 2007, The Biochemical journal.
[34] Robert P. St.Onge,et al. The Chemical Genomic Portrait of Yeast: Uncovering a Phenotype for All Genes , 2008, Science.
[35] Daniel N. Wilson,et al. The Weird and Wonderful World of Bacterial Ribosome Regulation , 2007, Critical reviews in biochemistry and molecular biology.
[36] Ru Wei,et al. The M2 splice isoform of pyruvate kinase is important for cancer metabolism and tumour growth , 2008, Nature.
[37] Pei Yee Ho,et al. Multiple High-Throughput Analyses Monitor the Response of E. coli to Perturbations , 2007, Science.
[38] U. Sauer,et al. Large-scale 13C-flux analysis reveals mechanistic principles of metabolic network robustness to null mutations in yeast , 2005, Genome Biology.
[39] P. Bork,et al. Functional organization of the yeast proteome by systematic analysis of protein complexes , 2002, Nature.
[40] A. Criollo,et al. The mitochondrial ribosomal protein of the large subunit, Afo1p, determines cellular longevity through mitochondrial back-signaling via TOR1 , 2009, Aging.
[41] Gustavo Caetano-Anollés,et al. The origin and evolution of modern metabolism. , 2009, The international journal of biochemistry & cell biology.
[42] B. Palsson,et al. Genome-scale models of microbial cells: evaluating the consequences of constraints , 2004, Nature Reviews Microbiology.
[43] L. Fontana. The scientific basis of caloric restriction leading to longer life , 2009, Current opinion in gastroenterology.
[44] C. Boschek,et al. Pyruvate kinase type M2 and its role in tumor growth and spreading. , 2005, Seminars in cancer biology.
[45] H. Llewelyn Roderick,et al. Ca2+ signalling checkpoints in cancer: remodelling Ca2+ for cancer cell proliferation and survival , 2008, Nature Reviews Cancer.
[46] B. Palsson,et al. Metabolic systems biology , 2009, Encyclopedia of Complexity and Systems Science.
[47] Barbara M. Bakker,et al. The fluxes through glycolytic enzymes in Saccharomyces cerevisiae are predominantly regulated at posttranscriptional levels , 2007, Proceedings of the National Academy of Sciences.
[48] S. Holmes,et al. SIR2-induced inviability is suppressed by histone H4 overexpression. , 2002, Genetics.
[49] A. Barabasi,et al. Hierarchical Organization of Modularity in Metabolic Networks , 2002, Science.
[50] C. Buchrieser,et al. A trans-Acting Riboswitch Controls Expression of the Virulence Regulator PrfA in Listeria monocytogenes , 2009, Cell.
[51] E. Stelzer,et al. A macrodomain-containing histone rearranges chromatin upon sensing PARP1 activation , 2009, Nature Structural &Molecular Biology.
[52] D. Moazed,et al. An Enzymatic Activity in the Yeast Sir2 Protein that Is Essential for Gene Silencing , 1999, Cell.
[53] B. Daignan-Fornier,et al. The isolation and characterization of Saccharomyces cerevisiae mutants that constitutively express purine biosynthetic genes. , 1997, Genetics.
[54] Axel Kowald,et al. Dynamic rerouting of the carbohydrate flux is key to counteracting oxidative stress , 2007, Journal of biology.
[55] D. Zipser,et al. The lactose operon , 1970 .
[56] Stephan Klaus,et al. Jonathan R. Beckwith and David Zipser, The Lactose Operon. 437 S., 150 Abb., 55 Tab. Cold Spring Harbor Laboratory 1970: Cold Spring Harbor Laboratory $ 14.– , 1973 .
[57] K. Jensen,et al. Metabolic growth rate control in Escherichia coli may be a consequence of subsaturation of the macromolecular biosynthetic apparatus with substrates and catalytic components. , 1990, Microbiological reviews.
[58] Alessandro Vespignani,et al. ATP-Citrate Lyase Links Cellular Metabolism to Histone Acetylation , 2009 .
[59] M. Lidstrom,et al. Flux Analysis Uncovers Key Role of Functional Redundancy in Formaldehyde Metabolism , 2005, PLoS biology.
[60] C. Colussi,et al. H2O2‐induced block of glycolysis as an active ADP‐ribosylation reaction protecting cells from apoptosis , 2000, FASEB journal : official publication of the Federation of American Societies for Experimental Biology.
[61] Russell B Williams,et al. Epigenetic remodeling of the fungal secondary metabolome. , 2008, Organic & biomolecular chemistry.
[62] C. Grant,et al. Metabolic reconfiguration is a regulated response to oxidative stress , 2008, Journal of biology.
[63] Alexander Schug,et al. Nonlocal helix formation is key to understanding S-adenosylmethionine-1 riboswitch function. , 2009, Biophysical journal.
[64] Anat Kreimer,et al. The evolution of modularity in bacterial metabolic networks , 2008, Proceedings of the National Academy of Sciences.
[65] S. Ryu,et al. Glycolytic Flux Signals to mTOR through Glyceraldehyde-3-Phosphate Dehydrogenase-Mediated Regulation of Rheb , 2009, Molecular and Cellular Biology.
[66] E. Kun,et al. Regulation of the enzymatic catalysis of poly(ADP-ribose) polymerase by dsDNA, polyamines, Mg2+, Ca2+, histones H1 and H3, and ATP. , 2004, Biochemistry.
[67] D. Sabatini,et al. Cancer Cell Metabolism: Warburg and Beyond , 2008, Cell.
[68] Christoph Wittmann,et al. Metabolic responses to pyruvate kinase deletion in lysine producing Corynebacterium glutamicum , 2008, Microbial cell factories.
[69] U. Alon,et al. Environmental variability and modularity of bacterial metabolic networks , 2007, BMC Evolutionary Biology.
[70] A. Yalçin,et al. Regulation of glucose metabolism by 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatases in cancer. , 2009, Experimental and molecular pathology.
[71] M. Dahl. CcpA-independent carbon catabolite repression in Bacillus subtilis. , 2002, Journal of molecular microbiology and biotechnology.
[72] A. Parekh,et al. Regulation of Store-Operated Calcium Channels by the Intermediary Metabolite Pyruvic Acid , 2007, Current Biology.
[73] W. Lim,et al. Defining Network Topologies that Can Achieve Biochemical Adaptation , 2009, Cell.
[74] J. Nielsen,et al. Integration of metabolome data with metabolic networks reveals reporter reactions , 2006, Molecular systems biology.
[75] D. Janero,et al. Hydroperoxide-induced oxidative stress impairs heart muscle cell carbohydrate metabolism. , 1994, The American journal of physiology.
[76] Bernhard O Palsson,et al. Hierarchical thinking in network biology: the unbiased modularization of biochemical networks. , 2004, Trends in biochemical sciences.