Learning-based deformable registration of MR brain images

This paper presents a learning-based method for deformable registration of magnetic resonance (MR) brain images. There are two novelties in the proposed registration method. First, a set of best-scale geometric features are selected for each point in the brain, in order to facilitate correspondence detection during the registration procedure. This is achieved by optimizing an energy function that requires each point to have its best-scale geometric features consistent over the corresponding points in the training samples, and at the same time distinctive from those of nearby points in the neighborhood. Second, the active points used to drive the brain registration are hierarchically selected during the registration procedure, based on their saliency and consistency measures. That is, the image points with salient and consistent features (across different individuals) are considered for the initial registration of two images, while other less salient and consistent points join the registration procedure later. By incorporating these two novel strategies into the framework of the HAMMER registration algorithm, the registration accuracy has been improved according to the results on simulated brain data, and also visible improvement is observed particularly in the cortical regions of real brain data

[1]  Dimitris N. Metaxas,et al.  Hybrid Image Registration based on Configural Matching of Scale-Invariant Salient Region Features , 2004, 2004 Conference on Computer Vision and Pattern Recognition Workshop.

[2]  Jerry L. Prince,et al.  Brain image registration based on curve mapping , 1994, Proceedings of IEEE Workshop on Biomedical Image Analysis.

[3]  Hon-Son Don,et al.  3-D Moment Forms: Their Construction and Application to Object Identification and Positioning , 1989, IEEE Trans. Pattern Anal. Mach. Intell..

[4]  Brian B. Avants,et al.  Shape averaging with diffeomorphic flows for atlas creation , 2004, 2004 2nd IEEE International Symposium on Biomedical Imaging: Nano to Macro (IEEE Cat No. 04EX821).

[5]  Dinggang Shen,et al.  HAMMER: hierarchical attribute matching mechanism for elastic registration , 2002, IEEE Transactions on Medical Imaging.

[6]  G. Christensen,et al.  Large Deformation Fluid Diffeomorphisms for Landmark and Image Matching , 1999 .

[7]  Dinggang Shen,et al.  Statistical Representation and Simulation of High-Dimensional Deformations: Application to Synthesizing Brain Deformations , 2005, MICCAI.

[8]  Christos Davatzikos,et al.  Estimating topology preserving and smooth displacement fields , 2004, IEEE Transactions on Medical Imaging.

[9]  Christos Davatzikos,et al.  Spatial Transformation and Registration of Brain Images Using Elastically Deformable Models , 1997, Comput. Vis. Image Underst..

[10]  Michael Brady,et al.  Saliency, Scale and Image Description , 2001, International Journal of Computer Vision.

[11]  Dinggang Shen,et al.  Determining correspondence in 3-D MR brain images using attribute vectors as morphological signatures of voxels , 2004, IEEE Transactions on Medical Imaging.

[12]  Alejandro F. Frangi,et al.  Active shape model segmentation with optimal features , 2002, IEEE Transactions on Medical Imaging.

[13]  Andrew Zisserman,et al.  An Affine Invariant Salient Region Detector , 2004, ECCV.

[14]  Timothy F. Cootes,et al.  A Unified Information-Theoretic Approach to Groupwise Non-rigid Registration and Model Building , 2005, IPMI.

[15]  Gary E. Christensen,et al.  Consistent image registration , 2001, IEEE Transactions on Medical Imaging.

[16]  Chia-Ling Tsai,et al.  The dual-bootstrap iterative closest point algorithm with application to retinal image registration , 2003, IEEE Transactions on Medical Imaging.

[17]  Jean-Philippe Thirion,et al.  Non-rigid matching using demons , 1996, Proceedings CVPR IEEE Computer Society Conference on Computer Vision and Pattern Recognition.

[18]  Paul A. Yushkevich,et al.  Segmentation, registration, and measurement of shape variation via image object shape , 1999, IEEE Transactions on Medical Imaging.

[19]  A. Toga,et al.  Brain atlases of normal and diseased populations. , 2005, International review of neurobiology.

[20]  Dinggang Shen,et al.  Segmentation of prostate boundaries from ultrasound images using statistical shape model , 2003, IEEE Transactions on Medical Imaging.

[21]  Peter Lorenzen,et al.  Multi-modal image set registration and atlas formation , 2006, Medical Image Anal..

[22]  Nicholas Ayache,et al.  A scheme for automatically building three-dimensional morphometric anatomical atlases: application to a skull atlas , 1998, Medical Image Anal..

[23]  R. Bajcsy,et al.  Elastically Deforming 3D Atlas to Match Anatomical Brain Images , 1993, Journal of computer assisted tomography.

[24]  Guido Gerig,et al.  Elastic model-based segmentation of 3-D neuroradiological data sets , 1999, IEEE Transactions on Medical Imaging.

[25]  S. Resnick,et al.  An image-processing system for qualitative and quantitative volumetric analysis of brain images. , 1998, Journal of computer assisted tomography.

[26]  Richard M. Leahy,et al.  Surface-based labeling of cortical anatomy using a deformable atlas , 1997, IEEE Transactions on Medical Imaging.

[27]  Michael Brady,et al.  Improved Optimization for the Robust and Accurate Linear Registration and Motion Correction of Brain Images , 2002, NeuroImage.

[28]  Stéphane Mallat,et al.  A Theory for Multiresolution Signal Decomposition: The Wavelet Representation , 1989, IEEE Trans. Pattern Anal. Mach. Intell..

[29]  Yanxi Liu,et al.  Learning-based Neuroimage Registration , 2004 .

[30]  Tianzi Jiang,et al.  Active Shape Model Segmentation Using Local Edge Structures and AdaBoost , 2004, MIAR.

[31]  Daniel Rueckert,et al.  Nonrigid registration using free-form deformations: application to breast MR images , 1999, IEEE Transactions on Medical Imaging.

[32]  Ronald R. Coifman,et al.  Entropy-based algorithms for best basis selection , 1992, IEEE Trans. Inf. Theory.

[33]  Paul M. Thompson,et al.  A surface-based technique for warping three-dimensional images of the brain , 1996, IEEE Trans. Medical Imaging.

[34]  Benoit M. Dawant,et al.  Brain Atlas Deformation in the Presence of Large Space-occupying Tumors , 1999, MICCAI.

[35]  K. Zilles,et al.  Human brain atlas: For high‐resolution functional and anatomical mapping , 1994, Human brain mapping.

[36]  S. Resnick,et al.  One-year age changes in MRI brain volumes in older adults. , 2000, Cerebral cortex.

[37]  C. Pelizzari,et al.  Accurate Three‐Dimensional Registration of CT, PET, and/or MR Images of the Brain , 1989, Journal of computer assisted tomography.

[38]  Lawrence H. Staib,et al.  Elastic Model Based Non-rigid Registration Incorporation Statistical Shape Information , 1998, MICCAI.

[39]  David Metcalf,et al.  A Digital Brain Atlas for Surgical Planning, Model-Driven Segmentation, and Teaching , 1996, IEEE Trans. Vis. Comput. Graph..

[40]  Christos Davatzikos,et al.  Shape Representation via Best Orthogonal Basis Selection , 2004, MICCAI.

[41]  Nick C Fox,et al.  Modeling brain deformations in Alzheimer disease by fluid registration of serial 3D MR images. , 1998, Journal of computer assisted tomography.

[42]  Anand Rangarajan,et al.  A new point matching algorithm for non-rigid registration , 2003, Comput. Vis. Image Underst..

[43]  D. Louis Collins,et al.  Warping of a computerized 3-D atlas to match brain image volumes for quantitative neuroanatomical and functional analysis , 1991, Medical Imaging.

[44]  Milan Sonka,et al.  Segmentation and interpretation of MR brain images. An improved active shape model , 1998, IEEE Transactions on Medical Imaging.

[45]  W. Eric L. Grimson,et al.  Efficient Population Registration of 3D Data , 2005, CVBIA.

[46]  G. Marchal,et al.  Multi-modal volume registration by maximization of mutual information , 1997 .