Soil microbiomes and one health

[1]  P. Bork,et al.  Enterotypes of the human gut mycobiome , 2022, bioRxiv.

[2]  Jianchu Xu,et al.  Microbial functional changes mark irreversible course of Tibetan grassland degradation , 2022, Nature Communications.

[3]  M. V. D. van der Heijden,et al.  Agricultural management and pesticide use reduce the functioning of beneficial plant symbionts , 2022, Nature Ecology & Evolution.

[4]  Hui Guo,et al.  Does pH matter for ecosystem multifunctionality? An empirical test in a semi‐arid grassland on the Loess Plateau , 2022, Functional Ecology.

[5]  M. Hauschild,et al.  Outside the Safe Operating Space of the Planetary Boundary for Novel Entities , 2022, Environmental science & technology.

[6]  S. J. Watts‐Williams,et al.  Global evaluation of commercial arbuscular mycorrhizal inoculants under greenhouse and field conditions , 2022, Applied Soil Ecology.

[7]  J. Ayroles,et al.  Natural selection for imprecise vertical transmission in host–microbiota systems , 2021, Nature Ecology & Evolution.

[8]  Carl-Fredrik Flach,et al.  Antibiotic resistance in the environment , 2021, Nature Reviews Microbiology.

[9]  Sam B. Coggins,et al.  Microbial interkingdom associations across soil depths reveal network connectivity and keystone taxa linked to soil fine-fraction carbon content , 2021 .

[10]  Robert J. Moore,et al.  Microbial taxa in dust and excreta associated with the productive performance of commercial meat chicken flocks , 2021, Animal Microbiome.

[11]  Laura J. Carter,et al.  The emerging threat of human‐use antifungals in sustainable and circular agriculture schemes , 2021, PLANTS, PEOPLE, PLANET.

[12]  M. V. D. van der Heijden,et al.  Lower relative abundance of ectomycorrhizal fungi under a warmer and drier climate is linked to enhanced soil organic matter decomposition. , 2021, The New phytologist.

[13]  Owen L. Petchey,et al.  Organic and conservation agriculture promote ecosystem multifunctionality , 2021, Science Advances.

[14]  K. Smalla,et al.  Editorial to the Thematic Topic "Towards a more sustainable agriculture through managing soil microbiomes". , 2021, FEMS microbiology ecology.

[15]  N. Fierer,et al.  Global homogenization of the structure and function in the soil microbiome of urban greenspaces , 2021, Science Advances.

[16]  M. Xue,et al.  Metagenomics analysis revealed the distinctive ruminal microbiome and resistive profiles in dairy buffaloes , 2021, Animal microbiome.

[17]  N. Fierer,et al.  Variable influences of soil and seed-associated bacterial communities on the assembly of seedling microbiomes , 2021, The ISME Journal.

[18]  A. Michelsen,et al.  A tipping point in carbon storage when forest expands into tundra is related to mycorrhizal recycling of nitrogen. , 2021, Ecology letters.

[19]  K. Eversole,et al.  Enabling sustainable agriculture through understanding and enhancement of microbiomes. , 2021, The New phytologist.

[20]  Felix E. Wettstein,et al.  Widespread Occurrence of Pesticides in Organically Managed Agricultural Soils-the Ghost of a Conventional Agricultural Past? , 2021, Environmental science & technology.

[21]  G. Moore,et al.  Anomalous collapses of Nares Strait ice arches leads to enhanced export of Arctic sea ice , 2021, Nature communications.

[22]  M. V. D. van der Heijden,et al.  Crop cover is more important than rotational diversity for soil multifunctionality and cereal yields in European cropping systems , 2021, Nature Food.

[23]  K. Nelson,et al.  Advances in Microbiome Research for Animal Health. , 2020, Annual review of animal biosciences.

[24]  S. Geisen,et al.  Nematodes as Drivers of Plant Performance in Natural Systems. , 2020, Trends in plant science.

[25]  Yunhua Zhang,et al.  Antibiotics increased host insecticide susceptibility via collapsed bacterial symbionts reducing detoxification metabolism in the brown planthopper, Nilaparvata lugens , 2020, Journal of Pest Science.

[26]  M. V. D. van der Heijden,et al.  Agricultural diversification promotes multiple ecosystem services without compromising yield , 2020, Science Advances.

[27]  Natalie C. Sadler,et al.  Soil Microbiomes Under Climate Change and Implications for Carbon Cycling , 2020 .

[28]  N. Fierer,et al.  How microbes can, and cannot, be used to assess soil health , 2020, Soil Biology and Biochemistry.

[29]  I. Kögel‐Knabner,et al.  The concept and future prospects of soil health , 2020, Nature Reviews Earth & Environment.

[30]  S. Tringe,et al.  Plant–microbiome interactions: from community assembly to plant health , 2020, Nature Reviews Microbiology.

[31]  H. Hirt Healthy soils for healthy plants for healthy humans , 2020, EMBO reports.

[32]  M. Schloter,et al.  Development of Microbiome Biobanks - Challenges and Opportunities. , 2020, Trends in microbiology.

[33]  S. Mavoa,et al.  Associations detected between measures of neighborhood environmental conditions and human microbiome diversity. , 2020, The Science of the total environment.

[34]  D. Saunders,et al.  Banishing barberry: The history of Berberis vulgaris prevalence and wheat stem rust incidence across Britain , 2020, Plant Pathology.

[35]  Omri M. Finkel,et al.  The Plant Microbiome: From Ecology to Reductionism and Beyond. , 2020, Annual review of microbiology.

[36]  Joshua J. Steffan,et al.  Soil and Human Health: Current Status and Future Needs , 2020 .

[37]  C. Guerra,et al.  The proportion of soil-borne pathogens increases with warming at the global scale , 2020, Nature Climate Change.

[38]  M. Wisniewski,et al.  Experimental evidence of microbial inheritance in plants and transmission routes from seed to phyllosphere and root. , 2020, Environmental microbiology.

[39]  T. Crowther,et al.  Distinct Assembly Processes and Microbial Communities Constrain Soil Organic Carbon Formation , 2020 .

[40]  S. He,et al.  A plant genetic network for preventing dysbiosis in the phyllosphere , 2020, Nature.

[41]  S. Reed,et al.  Multiple elements of soil biodiversity drive ecosystem functions across biomes , 2020, Nature Ecology & Evolution.

[42]  Yong-guan Zhu,et al.  Rare microbial taxa as the major drivers of ecosystem multifunctionality in long-term fertilized soils , 2020, Soil Biology and Biochemistry.

[43]  Chao Di,et al.  U1 snRNP regulates cancer cell migration and invasion in vitro , 2020, Nature Communications.

[44]  Kyle Bibby,et al.  Viruses in the Built Environment (VIBE) meeting report , 2020, Microbiome.

[45]  B. Singh,et al.  Eco-holobiont: a new concept to identify drivers of host-associated microorganisms. , 2019, Environmental microbiology.

[46]  M. Rillig,et al.  The role of multiple global change factors in driving soil functions and microbial biodiversity , 2019, Science.

[47]  Philip Weinstein,et al.  Naturally-diverse airborne environmental microbial exposures modulate the gut microbiome and may provide anxiolytic benefits in mice. , 2019, The Science of the total environment.

[48]  M. V. D. van der Heijden,et al.  Fungal-bacterial diversity and microbiome complexity predict ecosystem functioning , 2019, Nature Communications.

[49]  E. Timsit,et al.  Evaluation of the Nasopharyngeal Microbiota in Beef Cattle Transported to a Feedlot, With a Focus on Lactic Acid-Producing Bacteria , 2019, Front. Microbiol..

[50]  Qing‐Lin Chen,et al.  Transfer of antibiotic resistance from manure-amended soils to vegetable microbiomes. , 2019, Environment international.

[51]  S. Zechmeister-Boltenstern,et al.  Does Soil Contribute to the Human Gut Microbiome? , 2019, Microorganisms.

[52]  S. Clarke,et al.  Applications of the Soil, Plant and Rumen Microbiomes in Pastoral Agriculture , 2019, Front. Nutr..

[53]  Connor R. Fitzpatrick,et al.  Soil microbes alter plant fitness under competition and drought , 2019, Journal of evolutionary biology.

[54]  Na Zhang,et al.  NRT1.1B is associated with root microbiota composition and nitrogen use in field-grown rice , 2019, Nature Biotechnology.

[55]  A. Sessitsch,et al.  A review on the plant microbiome: Ecology, functions, and emerging trends in microbial application , 2019, Journal of advanced research.

[56]  T. M. Bezemer,et al.  Foliar-feeding insects acquire microbiomes from the soil rather than the host plant , 2019, Nature Communications.

[57]  I. Hanski,et al.  Soil exposure modifies the gut microbiota and supports immune tolerance in a mouse model , 2019, The Journal of allergy and clinical immunology.

[58]  C. Ritsema,et al.  Pesticide residues in European agricultural soils - A hidden reality unfolded. , 2019, The Science of the total environment.

[59]  J. Bengtsson-Palme,et al.  Diarrheal bacterial pathogens and multi-resistant enterobacteria in the Choqueyapu River in La Paz, Bolivia , 2019, PloS one.

[60]  U. Hofer The cost of antimicrobial resistance , 2018, Nature Reviews Microbiology.

[61]  D. Blumstein,et al.  The Extended Genotype: Microbially Mediated Olfactory Communication. , 2018, Trends in ecology & evolution.

[62]  Stephen M. Chignell,et al.  The demise of caterpillar fungus in the Himalayan region due to climate change and overharvesting , 2018, Proceedings of the National Academy of Sciences.

[63]  M. V. D. van der Heijden,et al.  Agricultural intensification reduces microbial network complexity and the abundance of keystone taxa in roots , 2018, The ISME Journal.

[64]  Jesse R. Zaneveld,et al.  One Health Relationships Between Human, Animal, and Environmental Microbiomes: A Mini-Review , 2018, Front. Public Health.

[65]  Falk Hildebrand,et al.  Structure and function of the global topsoil microbiome , 2018, Nature.

[66]  Eeva Furman,et al.  The impact of human activities and lifestyles on the interlinked microbiota and health of humans and of ecosystems. , 2018, The Science of the total environment.

[67]  Philip Weinstein,et al.  Ambient soil cation exchange capacity inversely associates with infectious and parasitic disease risk in regional Australia. , 2018, The Science of the total environment.

[68]  M. V. D. van der Heijden,et al.  Keystone taxa as drivers of microbiome structure and functioning , 2018, Nature Reviews Microbiology.

[69]  R. Milo,et al.  The biomass distribution on Earth , 2018, Proceedings of the National Academy of Sciences.

[70]  M. Wagner,et al.  Long-distance electron transport in individual, living cable bacteria , 2018, Proceedings of the National Academy of Sciences.

[71]  S. Adl,et al.  Soil protists: a fertile frontier in soil biology research. , 2018, FEMS microbiology reviews.

[72]  Luuk Fleskens,et al.  Soil quality – A critical review , 2018 .

[73]  Rob Knight,et al.  Current understanding of the human microbiome , 2018, Nature Medicine.

[74]  Miroslav Radeski,et al.  A Systems Approach to Evaluate One Health Initiatives , 2018, Front. Vet. Sci..

[75]  S. Morand,et al.  The One Health Concept: 10 Years Old and a Long Road Ahead , 2018, Front. Vet. Sci..

[76]  O. Nybroe,et al.  Suppression of the activity of arbuscular mycorrhizal fungi by the soil microbiota , 2018, The ISME Journal.

[77]  Karen L. Adair,et al.  Microbial community assembly in wild populations of the fruit fly Drosophila melanogaster , 2018, The ISME Journal.

[78]  D. Guttman,et al.  Assembly and ecological function of the root microbiome across angiosperm plant species , 2018, Proceedings of the National Academy of Sciences.

[79]  Joshua J. Steffan,et al.  The effect of soil on human health: an overview , 2018, European journal of soil science.

[80]  Kurt E. Williamson,et al.  Viruses in Soil Ecosystems: An Unknown Quantity Within an Unexplored Territory. , 2017, Annual review of virology.

[81]  N. Fierer Embracing the unknown: disentangling the complexities of the soil microbiome , 2017, Nature Reviews Microbiology.

[82]  O. Babalola,et al.  Microbial Phosphorus Solubilization and Its Potential for Use in Sustainable Agriculture , 2017, Front. Microbiol..

[83]  Laura H. Kahn Antimicrobial resistance: a One Health perspective , 2017, Transactions of the Royal Society of Tropical Medicine and Hygiene.

[84]  Y. Ok,et al.  Assessment of soil health in urban agriculture: Soil enzymes and microbial properties , 2017 .

[85]  Xiaowei Zhang,et al.  Where less may be more: how the rare biosphere pulls ecosystems strings , 2017, The ISME Journal.

[86]  M. Lange,et al.  Land-use intensification causes multitrophic homogenization of grassland communities , 2016, Nature.

[87]  Cameron Wagg,et al.  An Underground Revolution: Biodiversity and Soil Ecological Engineering for Agricultural Sustainability. , 2016, Trends in ecology & evolution.

[88]  N. Tuteja,et al.  Piriformospora indica: Potential and Significance in Plant Stress Tolerance , 2016, Front. Microbiol..

[89]  B. Sarkar,et al.  Microbial siderophores and their potential applications: a review , 2016, Environmental Science and Pollution Research.

[90]  S. Frey,et al.  Microbial carbon use efficiency: accounting for population, community, and ecosystem-scale controls over the fate of metabolized organic matter , 2016, Biogeochemistry.

[91]  J. Six,et al.  Soil biodiversity and human health , 2015, Nature.

[92]  Nadja K. Simons,et al.  Landscape simplification filters species traits and drives biotic homogenization , 2015, Nature Communications.

[93]  F. Freimoser,et al.  Tritagonist as a new term for uncharacterised microorganisms in environmental systems , 2015, The ISME Journal.

[94]  Marius Gilbert,et al.  Global trends in antimicrobial use in food animals , 2015, Proceedings of the National Academy of Sciences.

[95]  J. Frouz,et al.  Intensive agriculture reduces soil biodiversity across Europe , 2015, Global change biology.

[96]  Christopher J. Hale,et al.  DOMAINS REARRANGED METHYLTRANSFERASE3 controls DNA methylation and regulates RNA polymerase V transcript abundance in Arabidopsis , 2015, Proceedings of the National Academy of Sciences.

[97]  Richard D. Bardgett,et al.  Belowground biodiversity and ecosystem functioning , 2014, Nature.

[98]  David Bru,et al.  Recently identified microbial guild mediates soil N2O sink capacity , 2014 .

[99]  S. Premji,et al.  Geophagy practices and the content of chemical elements in the soil eaten by pregnant women in artisanal and small scale gold mining communities in Tanzania , 2014, BMC Pregnancy and Childbirth.

[100]  E. Paul J. Gibbs,et al.  The evolution of One Health: a decade of progress and challenges for the future , 2014, Veterinary Record.

[101]  James W. Jones,et al.  Tropical agricultural land management influences on soil microbial communities through its effect on soil organic carbon , 2013 .

[102]  P. Lemanceau,et al.  Going back to the roots: the microbial ecology of the rhizosphere , 2013, Nature Reviews Microbiology.

[103]  L. Wackett,et al.  Evaluating Pesticide Degradation in the Environment: Blind Spots and Emerging Opportunities , 2013, Science.

[104]  P. Schulze-Lefert,et al.  Structure and functions of the bacterial microbiota of plants. , 2013, Annual review of plant biology.

[105]  Joshua P. Schimel,et al.  Microbial control over carbon cycling in soil , 2012, Front. Microbio..

[106]  S. Siciliano,et al.  Spatially tripartite interactions of denitrifiers in arctic ecosystems: activities, functional groups and soil resources. , 2012, Environmental microbiology.

[107]  C. Pieterse,et al.  The rhizosphere microbiome and plant health. , 2012, Trends in plant science.

[108]  Tari Haahtela,et al.  Environmental biodiversity, human microbiota, and allergy are interrelated , 2012, Proceedings of the National Academy of Sciences.

[109]  T. Fukatsu,et al.  Symbiont-mediated insecticide resistance , 2012, Proceedings of the National Academy of Sciences.

[110]  Cyrus A. Mallon,et al.  Microbial diversity determines the invasion of soil by a bacterial pathogen , 2012, Proceedings of the National Academy of Sciences.

[111]  D. Manning,et al.  Persistence of soil organic matter as an ecosystem property , 2011, Nature.

[112]  J. Lucks,et al.  Why On Earth?: Evaluating Hypotheses About The Physiological Functions Of Human Geophagy , 2011, The Quarterly Review of Biology.

[113]  P. Bakker,et al.  Deciphering the Rhizosphere Microbiome for Disease-Suppressive Bacteria , 2011, Science.

[114]  T. Fukatsu,et al.  An ancient but promiscuous host–symbiont association between Burkholderia gut symbionts and their heteropteran hosts , 2011, The ISME Journal.

[115]  Rob Knight,et al.  Soil bacterial diversity in the Arctic is not fundamentally different from that found in other biomes. , 2010, Environmental microbiology.

[116]  Pete Smith,et al.  Microorganisms and climate change: terrestrial feedbacks and mitigation options , 2010, Nature Reviews Microbiology.

[117]  M. V. D. van der Heijden,et al.  Positive effects of organic farming on below-ground mutualists: large-scale comparison of mycorrhizal fungal communities in agricultural soils. , 2010, The New phytologist.

[118]  C. Sing,et al.  Impact of Direct Soil Exposures from Airborne Dust and Geophagy on Human Health , 2010, International journal of environmental research and public health.

[119]  Jason D. Hoeksema,et al.  A meta-analysis of context-dependency in plant response to inoculation with mycorrhizal fungi. , 2010, Ecology letters.

[120]  B. Lugtenberg,et al.  Plant-growth-promoting rhizobacteria. , 2009, Annual review of microbiology.

[121]  Martin A. Nuñez,et al.  Lack of belowground mutualisms hinders Pinaceae invasions. , 2009, Ecology.

[122]  A. Richardson,et al.  Acquisition of phosphorus and nitrogen in the rhizosphere and plant growth promotion by microorganisms , 2009, Plant and Soil.

[123]  Martin Parniske,et al.  Arbuscular mycorrhiza: the mother of plant root endosymbioses , 2008, Nature Reviews Microbiology.

[124]  M. V. D. van der Heijden,et al.  The unseen majority: soil microbes as drivers of plant diversity and productivity in terrestrial ecosystems. , 2008, Ecology letters.

[125]  A. V. Van Bruggen,et al.  Manure-amended soil characteristics affecting the survival of E. coli O157:H7 in 36 Dutch soils. , 2008, Environmental microbiology.

[126]  M. Arshad,et al.  Perspective of plant growth promoting rhizobacteria (PGPR) containing ACC deaminase in stress agriculture , 2007, Journal of Industrial Microbiology & Biotechnology.

[127]  F. Uzal,et al.  Outbreak of malignant oedema in sheep caused by Clostridium sordellii, predisposed by routine vaccination , 2007, Veterinary Record.

[128]  E. Mardis,et al.  An obesity-associated gut microbiome with increased capacity for energy harvest , 2006, Nature.

[129]  L. Eberl,et al.  The rhizosphere as a reservoir for opportunistic human pathogenic bacteria. , 2005, Environmental microbiology.

[130]  R. Koide,et al.  Is plant performance limited by abundance of arbuscular mycorrhizal fungi? A meta-analysis of studies published between 1988 and 2003. , 2005, The New phytologist.

[131]  David L. Swerdlow,et al.  Epidemiology of Escherichia coli O157:H7 Outbreaks, United States, 1982–2002 , 2005, Emerging infectious diseases.

[132]  F. Chapin,et al.  EFFECTS OF BIODIVERSITY ON ECOSYSTEM FUNCTIONING: A CONSENSUS OF CURRENT KNOWLEDGE , 2005 .

[133]  S. Polasky,et al.  Agricultural sustainability and intensive production practices , 2002, Nature.

[134]  F. Uzal,et al.  Malignant oedema associated with blood-sampling in sheep. , 2002, Australian veterinary journal.

[135]  Maria Yazdanbakhsh,et al.  Allergy, parasites, and the hygiene hypothesis. , 2002, Science.

[136]  S. Carpenter,et al.  Catastrophic shifts in ecosystems , 2001, Nature.

[137]  C. Karp,et al.  The germless theory of allergic disease: revisiting the hygiene hypothesis , 2001, Nature Reviews Immunology.

[138]  Johan Six,et al.  Aggregation and soil organic matter accumulation in cultivated and native grassland soils , 1998 .

[139]  W. Parton,et al.  Agricultural intensification and ecosystem properties. , 1997, Science.

[140]  P. C. Dias,et al.  Sources and sinks in population biology. , 1996, Trends in ecology & evolution.

[141]  P. Yesudian,et al.  Nocardiosis , 1972, The Australasian journal of dermatology.

[142]  W. B. Healy,et al.  Ingestion of soil by dairy cows , 1968 .

[143]  B. Bai,et al.  Bacterivore nematodes stimulate soil gross N transformation rates depending on their species , 2017, Biology and Fertility of Soils.

[144]  J. McCarthy,et al.  Hookworm infection , 2016, Nature Reviews Disease Primers.

[145]  A. McBratney,et al.  The dimensions of soil security , 2014 .

[146]  C. Liang,et al.  Microbial production of recalcitrant organic matter in global soils: implications for productivity and climate policy , 2011, Nature Reviews Microbiology.

[147]  Gary E. Harman,et al.  Trichoderma species — opportunistic, avirulent plant symbionts , 2004, Nature Reviews Microbiology.

[148]  T. Whitham,et al.  Tansley Review , 2022 .

[149]  J. Huisman,et al.  UvA-DARE (Digital Academic Repository) Scientists’ warning to humanity: microorganisms and climate change , 2022 .