Plasma membrane phosphatidylinositol 4-phosphate and 4,5-bisphosphate determine the distribution and function of K-Ras4B but not H-Ras proteins

Plasma membrane (PM) localization of Ras proteins is crucial for transmitting signals upon mitogen stimulation. Post-translational lipid modification of Ras proteins plays an important role in their recruitment to the PM. Electrostatic interactions between negatively charged PM phospholipids and basic amino acids found in K-Ras4B (K-Ras) but not in H-Ras are important for permanent K-Ras localization to the PM. Here, we investigated how acute depletion of negatively charged PM polyphosphoinositides (PPIns) from the PM alters the intracellular distribution and activity of K- and H-Ras proteins. PPIns depletion from the PM was achieved either by agonist-induced activation of phospholipase C β or with a rapamycin-inducible system in which various phosphatidylinositol phosphatases were recruited to the PM. Redistribution of the two Ras proteins was monitored with confocal microscopy or with a recently developed bioluminescence resonance energy transfer-based approach involving fusion of the Ras C-terminal targeting sequences or the entire Ras proteins to Venus fluorescent protein. We found that PM PPIns depletion caused rapid translocation of K-Ras but not H-Ras from the PM to the Golgi. PM depletion of either phosphatidylinositol 4-phosphate (PtdIns4P) or PtdIns(4,5)P2 but not PtdIns(3,4,5)P3 was sufficient to evoke K-Ras translocation. This effect was diminished by deltarasin, an inhibitor of the Ras–phosphodiesterase interaction, or by simultaneous depletion of the Golgi PtdIns4P. The PPIns depletion decreased incorporation of [3H]leucine in K-Ras–expressing cells, suggesting that Golgi-localized K-Ras is not as signaling-competent as its PM-bound form. We conclude that PPIns in the PM are important regulators of K-Ras–mediated signals.

[1]  T. Elston,et al.  Divergent Roles of CAAX Motif-signaled Posttranslational Modifications in the Regulation and Subcellular Localization of Ral GTPases* , 2015, The Journal of Biological Chemistry.

[2]  T. Balla,et al.  A novel probe for phosphatidylinositol 4-phosphate reveals multiple pools beyond the Golgi , 2014, The Journal of cell biology.

[3]  S. Grinstein,et al.  Dynamics of KRas on endosomes: involvement of acidic phospholipids in its association , 2014, FASEB journal : official publication of the Federation of American Societies for Experimental Biology.

[4]  R. Leventis,et al.  K-ras4B and prenylated proteins lacking "second signals" associate dynamically with cellular membranes. , 2005, Molecular biology of the cell.

[5]  K. Levental,et al.  Membrane raft association is a determinant of plasma membrane localization , 2014, Proceedings of the National Academy of Sciences.

[6]  Ozlem Keskin,et al.  Ras Conformational Ensembles, Allostery, and Signaling. , 2016, Chemical reviews.

[7]  Yongdeng Zhang,et al.  Nanoscale Landscape of Phosphoinositides Revealed by Specific Pleckstrin Homology (PH) Domains Using Single-molecule Superresolution Imaging in the Plasma Membrane* , 2015, The Journal of Biological Chemistry.

[8]  A. Johs,et al.  The interactions of peripheral membrane proteins with biological membranes. , 2015, Chemistry and physics of lipids.

[9]  J. Hancock,et al.  Individual Palmitoyl Residues Serve Distinct Roles in H-Ras Trafficking, Microlocalization, and Signaling , 2005, Molecular and Cellular Biology.

[10]  A. Gorfe,et al.  Ras membrane orientation and nanodomain localization generate isoform diversity , 2010, Proceedings of the National Academy of Sciences.

[11]  T. Morimoto,et al.  Endomembrane Trafficking of Ras The CAAX Motif Targets Proteins to the ER and Golgi , 1999, Cell.

[12]  J. Cambier,et al.  Faculty Opinions recommendation of PI(3,4,5)P3 and PI(4,5)P2 lipids target proteins with polybasic clusters to the plasma membrane. , 2006 .

[13]  P. Várnai,et al.  Rapidly inducible changes in phosphatidylinositol 4,5-bisphosphate levels influence multiple regulatory functions of the lipid in intact living cells , 2006, The Journal of cell biology.

[14]  J. van Rheenen,et al.  PIP2 signaling in lipid domains: a critical re‐evaluation , 2005, The EMBO journal.

[15]  Zhenzhen Wang,et al.  PAQR10 and PAQR11 mediate Ras signaling in the Golgi apparatus , 2011, Cell Research.

[16]  Tony Yeung,et al.  Membrane Phosphatidylserine Regulates Surface Charge and Protein Localization , 2008, Science.

[17]  X. Bustelo,et al.  Exchange Factors of the RasGRP Family Mediate Ras Activation in the Golgi* , 2003, Journal of Biological Chemistry.

[18]  M. Philips,et al.  Thematic review series: Lipid Posttranslational Modifications CAAX modification and membrane targeting of Ras Published, JLR Papers in Press, March 16, 2006. , 2006, Journal of Lipid Research.

[19]  P. Bastiaens,et al.  Small molecule inhibition of the KRAS–PDEδ interaction impairs oncogenic KRAS signalling , 2013, Nature.

[20]  Malte Schmick,et al.  KRas Localizes to the Plasma Membrane by Spatial Cycles of Solubilization, Trapping and Vesicular Transport , 2014, Cell.

[21]  C. Thompson,et al.  PKC regulates a farnesyl-electrostatic switch on K-Ras that promotes its association with Bcl-XL on mitochondria and induces apoptosis. , 2006, Molecular cell.

[22]  L. Hunyady,et al.  BRET-monitoring of the dynamic changes of inositol lipid pools in living cells reveals a PKC-dependent PtdIns4P increase upon EGF and M3 receptor activation. , 2016, Biochimica et biophysica acta.

[23]  C. Der,et al.  The RalGEF-Ral Effector Signaling Network: The Road Less Traveled for Anti-Ras Drug Discovery. , 2011, Genes & cancer.

[24]  Andrew M. Piggott,et al.  Staurosporines Disrupt Phosphatidylserine Trafficking and Mislocalize Ras Proteins* , 2012, The Journal of Biological Chemistry.

[25]  T. Calimeri,et al.  m‐TOR inhibitors and their potential role in haematological malignancies , 2017, British journal of haematology.

[26]  R. Tsien,et al.  Partitioning of Lipid-Modified Monomeric GFPs into Membrane Microdomains of Live Cells , 2002, Science.

[27]  Robert G. Parton,et al.  Direct visualization of Ras proteins in spatially distinct cell surface microdomains , 2003, The Journal of cell biology.

[28]  Dharini van der Hoeven,et al.  Inhibition of Acid Sphingomyelinase Depletes Cellular Phosphatidylserine and Mislocalizes K-Ras from the Plasma Membrane , 2015, Molecular and Cellular Biology.

[29]  R. Khandelwal,et al.  Effects of rapamycin on cell proliferation and phosphorylation of mTOR and p70(S6K) in HepG2 and HepG2 cells overexpressing constitutively active Akt/PKB. , 2007, Biochimica et biophysica acta.

[30]  Herbert Waldmann,et al.  An Acylation Cycle Regulates Localization and Activity of Palmitoylated Ras Isoforms , 2005, Science.

[31]  R. Stahelin,et al.  Cellular and molecular interactions of phosphoinositides and peripheral proteins. , 2014, Chemistry and physics of lipids.

[32]  P. Bastiaens,et al.  Identification of pyrazolopyridazinones as PDEδ inhibitors , 2016, Nature Communications.

[33]  C. Der,et al.  Geranylgeranyltransferase I Inhibitors Target RalB To Inhibit Anchorage-Dependent Growth and Induce Apoptosis and RalA To Inhibit Anchorage-Independent Growth , 2007, Molecular and Cellular Biology.

[34]  S. Grinstein,et al.  Phosphatidylserine dynamics in cellular membranes , 2012, Molecular biology of the cell.

[35]  I. Levental,et al.  The Continuing Mystery of Lipid Rafts. , 2016, Journal of molecular biology.

[36]  Xin Zhou,et al.  PI3K/Akt signaling requires spatial compartmentalization in plasma membrane microdomains , 2011, Proceedings of the National Academy of Sciences.

[37]  E. Bongarzone,et al.  Recent progress on lipid lateral heterogeneity in plasma membranes: From rafts to submicrometric domains. , 2016, Progress in lipid research.

[38]  Dharini van der Hoeven,et al.  Fendiline Inhibits K-Ras Plasma Membrane Localization and Blocks K-Ras Signal Transmission , 2012, Molecular and Cellular Biology.

[39]  J. B. Sajous,et al.  Ras signalling on the endoplasmic reticulum and the Golgi , 2002, Nature Cell Biology.

[40]  T. Balla,et al.  PI4P and PI(4,5)P2 Are Essential But Independent Lipid Determinants of Membrane Identity , 2012, Science.

[41]  D. Morrison,et al.  A CC-SAM, for Coiled Coil–Sterile α Motif, Domain Targets the Scaffold KSR-1 to Specific Sites in the Plasma Membrane , 2012, Science Signaling.

[42]  Carla Mattos,et al.  A comprehensive survey of Ras mutations in cancer. , 2012, Cancer research.

[43]  D. Matallanas,et al.  Distinct Utilization of Effectors and Biological Outcomes Resulting from Site-Specific Ras Activation: Ras Functions in Lipid Rafts and Golgi Complex Are Dispensable for Proliferation and Transformation , 2006, Molecular and Cellular Biology.

[44]  Krister Wennerberg,et al.  The Ras superfamily at a glance , 2005, Journal of Cell Science.

[45]  M. Therrien,et al.  KSR and CNK: two scaffolds regulating RAS-mediated RAF activation , 2007, Oncogene.

[46]  A. V. von Arnim,et al.  Mutational optimization of the coelenterazine-dependent luciferase from Renilla , 2008, Plant Methods.

[47]  Y. Kloog,et al.  Galectin-3 Augments K-Ras Activation and Triggers a Ras Signal That Attenuates ERK but Not Phosphoinositide 3-Kinase Activity* , 2004, Journal of Biological Chemistry.

[48]  L. Hunyady,et al.  Investigation of the Fate of Type I Angiotensin Receptor after Biased Activation , 2015, Molecular Pharmacology.

[49]  P. Várnai,et al.  How accurately can we image inositol lipids in living cells? , 2000, Trends in pharmacological sciences.

[50]  Yong Zhou,et al.  Ras nanoclusters: Versatile lipid-based signaling platforms. , 2015, Biochimica et biophysica acta.

[51]  Péter Várnai,et al.  Visualization of Phosphoinositides That Bind Pleckstrin Homology Domains: Calcium- and Agonist-induced Dynamic Changes and Relationship to Myo-[3H]inositol-labeled Phosphoinositide Pools , 1998, The Journal of cell biology.

[52]  C. Der,et al.  Ral small GTPase signaling and oncogenesis: More than just 15minutes of fame. , 2014, Biochimica et biophysica acta.

[53]  L. Hunyady,et al.  Visualization and Manipulation of Plasma Membrane-Endoplasmic Reticulum Contact Sites Indicates the Presence of Additional Molecular Components within the STIM1-Orai1 Complex*♦ , 2007, Journal of Biological Chemistry.

[54]  W. Rodgers,et al.  Compartmentalization of Phosphatidylinositol 4,5-Bisphosphate Signaling Evidenced Using Targeted Phosphatases* , 2008, Journal of Biological Chemistry.

[55]  Mark Philips,et al.  Receptor Activation Alters Inner Surface Potential During Phagocytosis , 2006, Science.

[56]  L. Pike,et al.  Cholesterol Depletion Delocalizes Phosphatidylinositol Bisphosphate and Inhibits Hormone-stimulated Phosphatidylinositol Turnover* , 1998, The Journal of Biological Chemistry.

[57]  P. Blumberg,et al.  Phorbol esters modulate the Ras exchange factor RasGRP3. , 2001, Cancer research.

[58]  Michael C. Gregory,et al.  Interaction of KRas4b with anionic membranes: A special role for PIP2. , 2017, Biochemical and biophysical research communications.

[59]  H. Scheidt,et al.  Structure and dynamics of the myristoyl lipid modification of SRC peptides determined by 2H solid-state NMR spectroscopy. , 2009, Biophysical journal.

[60]  D. Murray,et al.  Plasma membrane phosphoinositide organization by protein electrostatics , 2005, Nature.

[61]  Bruno Antonny,et al.  Curvature, lipid packing, and electrostatics of membrane organelles: defining cellular territories in determining specificity. , 2012, Developmental cell.

[62]  P. Várnai,et al.  Acute manipulation of Golgi phosphoinositides to assess their importance in cellular trafficking and signaling , 2010, Proceedings of the National Academy of Sciences.

[63]  P. Várnai,et al.  Phosphatidylinositol 3-Kinase-dependent Membrane Association of the Bruton’s Tyrosine Kinase Pleckstrin Homology Domain Visualized in Single Living Cells* , 1999, The Journal of Biological Chemistry.

[64]  L. Hunyady,et al.  Acute depletion of plasma membrane phosphatidylinositol 4,5-bisphosphate impairs specific steps in endocytosis of the G-protein-coupled receptor , 2012, Journal of Cell Science.

[65]  L. Goldfinger,et al.  Regulation of Ras signaling and function by plasma membrane microdomains. , 2017, Bioscience trends.

[66]  T. Takenawa,et al.  A distinct pool of phosphatidylinositol 4,5-bisphosphate in caveolae revealed by a nanoscale labeling technique , 2009, Proceedings of the National Academy of Sciences.

[67]  L. Hunyady,et al.  Demonstration of Angiotensin II-induced Ras Activation in the trans-Golgi Network and Endoplasmic Reticulum Using Bioluminescence Resonance Energy Transfer-based Biosensors* , 2010, The Journal of Biological Chemistry.