The Arabidopsis Framework Model version 2 predicts the organism-level effects of circadian clock gene mis-regulation
暂无分享,去创建一个
Yin Hoon Chew | M. Stitt | A. Millar | Alison M. Smith | S. Zeeman | D. Seaton | A. Hume | A. Flis | Virginie Mengin | S. Mugford | Sam T. Mugford | Gavin M. George | Michael Moulin | Teresa B. Fitzpatrick
[1] D. MacLean,et al. A Putative Phosphatase, LSF1, Is Required for Normal Starch Turnover in Arabidopsis Leaves1[W][OA] , 2009, Plant Physiology.
[2] M. Stitt,et al. Quantifying Protein Synthesis and Degradation in Arabidopsis by Dynamic 13CO2 Labeling and Analysis of Enrichment in Individual Amino Acids in Their Free Pools and in Protein1[OPEN] , 2015, Plant Physiology.
[3] Paul-Henry Cournède,et al. A model-based analysis of the dynamics of carbon balance at the whole-plant level in Arabidopsis thaliana. , 2008, Functional plant biology : FPB.
[4] Joost T. van Dongen,et al. Diurnal Changes of Polysome Loading Track Sucrose Content in the Rosette of Wild-Type Arabidopsis and the Starchless pgm Mutant1[W][OA] , 2013, Plant Physiology.
[5] Young Hun Song,et al. Linked circadian outputs control elongation growth and flowering in response to photoperiod and temperature , 2015, Molecular systems biology.
[6] Andrew J. Millar,et al. Prediction of Photoperiodic Regulators from Quantitative Gene Circuit Models , 2009, Cell.
[7] Kevin W Eliceiri,et al. NIH Image to ImageJ: 25 years of image analysis , 2012, Nature Methods.
[8] Anthony Hall,et al. Plant Circadian Clocks Increase Photosynthesis, Growth, Survival, and Competitive Advantage , 2005, Science.
[9] M. Stitt,et al. Defining the robust behaviour of the plant clock gene circuit with absolute RNA timeseries and open infrastructure , 2015, Open Biology.
[10] M. Stitt,et al. Arabidopsis coordinates the diurnal regulation of carbon allocation and growth across a wide range of photoperiods. , 2014, Molecular plant.
[11] Yin Hoon Chew,et al. Multiscale digital Arabidopsis predicts individual organ and whole-organism growth , 2014, Proceedings of the National Academy of Sciences.
[12] A. Millar. The Intracellular Dynamics of Circadian Clocks Reach for the Light of Ecology and Evolution. , 2016, Annual review of plant biology.
[13] Joseph S. Takahashi,et al. Circadian Integration of Metabolism and Energetics , 2010, Science.
[14] T. Mizuno,et al. PSEUDO-RESPONSE REGULATORS 9, 7, and 5 Are Transcriptional Repressors in the Arabidopsis Circadian Clock[W][OA] , 2010, Plant Cell.
[15] Frank Schleifenbaum,et al. Analysis of Arabidopsis with Highly Reduced Levels of Malate and Fumarate Sheds Light on the Role of These Organic Acids as Storage Carbon Molecules1[W] , 2010, Plant Physiology.
[16] N. Novère. Quantitative and logic modelling of molecular and gene networks , 2015, Nature Reviews Genetics.
[17] W. Gruissem,et al. Quantifying Protein Synthesis and Degradation in Arabidopsis , 2015 .
[18] Mark Stitt,et al. Metabolism and Growth in Arabidopsis Depend on the Daytime Temperature but Are Temperature-Compensated against Cool Nights[W][OA] , 2012, Plant Cell.
[19] Pierre Tocquin,et al. Leaf carbohydrate controls over Arabidopsis growth and response to elevated CO2: an experimentally based model. , 2006, The New phytologist.
[20] S. Golden,et al. Resonating circadian clocks enhance fitness in cyanobacteria. , 1998, Proceedings of the National Academy of Sciences of the United States of America.
[21] Mark Stitt,et al. Use of reverse-phase liquid chromatography, linked to tandem mass spectrometry, to profile the Calvin cycle and other metabolic intermediates in Arabidopsis rosettes at different carbon dioxide concentrations. , 2009, The Plant journal : for cell and molecular biology.
[22] G. Odell,et al. The segment polarity network is a robust developmental module , 2000, Nature.
[23] A. Millar,et al. Regulatory principles and experimental approaches to the circadian control of starch turnover , 2014, Journal of The Royal Society Interface.
[24] Martin Howard,et al. Arabidopsis plants perform arithmetic division to prevent starvation at night , 2013, eLife.
[25] Kazuki Saito,et al. Impact of clock-associated Arabidopsis pseudo-response regulators in metabolic coordination , 2009, Proceedings of the National Academy of Sciences.
[26] S. Gibson,et al. Fumaric acid: an overlooked form of fixed carbon in Arabidopsis and other plant species , 2000, Planta.
[27] A. Millar,et al. The clock gene circuit in Arabidopsis includes a repressilator with additional feedback loops , 2012, Molecular systems biology.
[28] T. Mizuno,et al. The circadian clock regulates the photoperiodic response of hypocotyl elongation through a coincidence mechanism in Arabidopsis thaliana. , 2009, Plant & cell physiology.
[29] F. Harmon,et al. Circadian Clock Genes Universally Control Key Agricultural Traits. , 2015, Molecular plant.
[30] J. Denu,et al. Circadian Clock NAD+ Cycle Drives Mitochondrial Oxidative Metabolism in Mice , 2013, Science.
[31] Paul E. Brown,et al. Extension of a genetic network model by iterative experimentation and mathematical analysis , 2005, Molecular systems biology.
[32] Fiona C. Robertson,et al. Photosynthetic entrainment of the Arabidopsis circadian clock , 2013, Nature.
[33] Yin Hoon Chew,et al. An augmented Arabidopsis phenology model reveals seasonal temperature control of flowering time. , 2012, The New phytologist.
[34] Andrew J. Millar,et al. FKF1 Conveys Timing Information for CONSTANS Stabilization in Photoperiodic Flowering , 2012, Science.
[35] E. Tobin,et al. Circadian Rhythms Confer a Higher Level of Fitness to Arabidopsis Plants1 , 2002, Plant Physiology.
[36] Michael P. Pound,et al. Systems Analysis of Auxin Transport in the Arabidopsis Root Apex[W][OPEN] , 2014, Plant Cell.
[37] Mark Stitt,et al. Circadian control of carbohydrate availability for growth in Arabidopsis plants at night , 2010, Proceedings of the National Academy of Sciences.
[38] T. Mizuno,et al. Arabidopsis clock-associated pseudo-response regulators PRR9, PRR7 and PRR5 coordinately and positively regulate flowering time through the canonical CONSTANS-dependent photoperiodic pathway. , 2007, Plant & cell physiology.
[39] Dani Zamir,et al. Domestication selected for deceleration of the circadian clock in cultivated tomato , 2015, Nature Genetics.
[40] Björn H. Junker,et al. Multiscale Metabolic Modeling: Dynamic Flux Balance Analysis on a Whole-Plant Scale1[W][OPEN] , 2013, Plant Physiology.