lncRNA Functional Networks in Oligodendrocytes Reveal Stage-Specific Myelination Control by an lncOL1/Suz12 Complex in the CNS
暂无分享,去创建一个
Yulan Lu | Danyang He | Yaqi Deng | Yueh-Chiang Hu | Jincheng Wang | Lingli Xu | Q. Lu | Yueh-Chiang Hu | Chuntao Zhao | Q. Richard Lu | Yinhuai Chen | Jincheng Wang | Chuntao Zhao | Lingli Xu | Yinhuai Chen | Wenhao Zhou | Yulan Lu | Danyang He | Wenhao Zhou | Yaqi Deng | Q. R. Lu
[1] Yong Zhang,et al. CPC: assess the protein-coding potential of transcripts using sequence features and support vector machine , 2007, Nucleic Acids Res..
[2] M. Ratajczak. Igf2-H19, an imprinted tandem gene, is an important regulator of embryonic development, a guardian of proliferation of adult pluripotent stem cells, a regulator of longevity, and a 'passkey' to cancerogenesis. , 2012, Folia histochemica et cytobiologica.
[3] R. Rudick,et al. Axonal transection in the lesions of multiple sclerosis. , 1998, The New England journal of medicine.
[4] Abdullahi Umar Ibrahim,et al. Genome Engineering Using the CRISPR Cas9 System , 2019 .
[5] Howard Y. Chang,et al. Long Noncoding RNAs: Cellular Address Codes in Development and Disease , 2013, Cell.
[6] R. Dahiya,et al. CYP1B1 promotes tumorigenesis via altered expression of CDC20 and DAPK1 genes in renal cell carcinoma , 2015, BMC Cancer.
[7] Guo-Cheng Yuan,et al. EZH1 mediates methylation on histone H3 lysine 27 and complements EZH2 in maintaining stem cell identity and executing pluripotency. , 2008, Molecular cell.
[8] Michael F. Lin,et al. Chromatin signature reveals over a thousand highly conserved large non-coding RNAs in mammals , 2009, Nature.
[9] R. Feil,et al. Long noncoding RNAs in human disease: emerging mechanisms and therapeutic strategies. , 2015, Epigenomics.
[10] R. Rudick,et al. Premyelinating oligodendrocytes in chronic lesions of multiple sclerosis. , 2002, The New England journal of medicine.
[11] J. Doudna,et al. The new frontier of genome engineering with CRISPR-Cas9 , 2014, Science.
[12] David G. Knowles,et al. The GENCODE v7 catalog of human long noncoding RNAs: Analysis of their gene structure, evolution, and expression , 2012, Genome research.
[13] S. Keleş,et al. Differential Sox10 genomic occupancy in myelinating glia , 2015, Glia.
[14] Manolis Kellis,et al. PhyloCSF: a comparative genomics method to distinguish protein coding and non-coding regions , 2011, Bioinform..
[15] T. Wood,et al. IGF-I and FGF-2 coordinately enhance cyclin D1 and cyclin E–cdk2 association and activity to promote G1 progression in oligodendrocyte progenitor cells , 2004, Molecular and Cellular Neuroscience.
[16] Elliott H. Sherr,et al. Dual-Mode Modulation of Smad Signaling by Smad-Interacting Protein Sip1 Is Required for Myelination in the Central Nervous System , 2012, Neuron.
[17] Shane J. Neph,et al. A comparative encyclopedia of DNA elements in the mouse genome , 2014, Nature.
[18] Sven Diederichs,et al. The four dimensions of noncoding RNA conservation. , 2014, Trends in genetics : TIG.
[19] Shan Zong,et al. Comprehensive Identification of Long Non-coding RNAs in Purified Cell Types from the Brain Reveals Functional LncRNA in OPC Fate Determination , 2015, PLoS genetics.
[20] D. Bartel,et al. lincRNAs: Genomics, Evolution, and Mechanisms , 2013, Cell.
[21] Q. Lu,et al. MicroRNA-Mediated Control of Oligodendrocyte Differentiation , 2010, Neuron.
[22] B. Emery,et al. Transcriptional and Epigenetic Regulation of Oligodendrocyte Development and Myelination in the Central Nervous System. , 2015, Cold Spring Harbor perspectives in biology.
[23] Clifford A. Meyer,et al. Cistrome: an integrative platform for transcriptional regulation studies , 2011, Genome Biology.
[24] R. Kurokawa,et al. Long Noncoding RNAs , 2015, Springer Japan.
[25] J. Zuchero,et al. Intrinsic and extrinsic control of oligodendrocyte development , 2013, Current Opinion in Neurobiology.
[26] S. Goldman,et al. Dual regulatory switch through interactions of Tcf7l2/Tcf4 with stage-specific partners propels oligodendroglial maturation , 2016, Nature Communications.
[27] J. Rapola,et al. Glomerular anionic charge in congenital nephrotic syndrome of the Finnish type , 2004, The Histochemical Journal.
[28] S. Lowe,et al. The Polycomb complex PRC2 supports aberrant self-renewal in a mouse model of MLL-AF9;NrasG12D acute myeloid leukemia , 2013, Oncogene.
[29] T. Maniatis,et al. An RNA-Sequencing Transcriptome and Splicing Database of Glia, Neurons, and Vascular Cells of the Cerebral Cortex , 2014, The Journal of Neuroscience.
[30] C. Glass,et al. Induced ncRNAs Allosterically Modify RNA Binding Proteins in cis to Inhibit Transcription , 2008, Nature.
[31] Petr Klus,et al. catRAPID omics: a web server for large-scale prediction of protein–RNA interactions , 2013, Bioinform..
[32] T. Kuhlmann,et al. Chromatin Landscape Defined by Repressive Histone Methylation during Oligodendrocyte Differentiation , 2015, The Journal of Neuroscience.
[33] Cole Trapnell,et al. Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation. , 2010, Nature biotechnology.
[34] A. Bar-Or,et al. Glatiramer acetate-reactive T lymphocytes regulate oligodendrocyte progenitor cell number in vitro: Role of IGF-2 , 2010, Journal of Neuroimmunology.
[35] Howard Y. Chang,et al. Genome regulation by long noncoding RNAs. , 2012, Annual review of biochemistry.
[36] Tao Sun,et al. Common Developmental Requirement for Olig Function Indicates a Motor Neuron/Oligodendrocyte Connection , 2002, Cell.
[37] A. Stemmer-Rachamimov,et al. Olig2-Dependent Reciprocal Shift in PDGF and EGF Receptor Signaling Regulates Tumor Phenotype and Mitotic Growth in Malignant Glioma. , 2016, Cancer cell.
[38] Federico Agostini,et al. Predicting protein associations with long noncoding RNAs , 2011, Nature Methods.
[39] P. Igarashi,et al. Transcription Factor Hepatocyte Nuclear Factor-1β (HNF-1β) Regulates MicroRNA-200 Expression through a Long Noncoding RNA* , 2015, The Journal of Biological Chemistry.
[40] J. Mattick,et al. Long noncoding RNAs in neuronal-glial fate specification and oligodendrocyte lineage maturation , 2010, BMC Neuroscience.
[41] L. M. Wu,et al. Olig2 Targets Chromatin Remodelers to Enhancers to Initiate Oligodendrocyte Differentiation , 2013, Cell.
[42] Jia Qian Wu,et al. RNA-Seq Characterization of Spinal Cord Injury Transcriptome in Acute/Subacute Phases: A Resource for Understanding the Pathology at the Systems Level , 2013, PloS one.
[43] S. Mar,et al. Axonal damage in leukodystrophies. , 2010, Pediatric neurology.
[44] J. Kocher,et al. CPAT: Coding-Potential Assessment Tool using an alignment-free logistic regression model , 2013, Nucleic acids research.
[45] F. Luft,et al. Long non-coding RNA in health and disease , 2014, Journal of Molecular Medicine.
[46] Frank Grützner,et al. The evolution of lncRNA repertoires and expression patterns in tetrapods , 2014, Nature.
[47] T. Thum,et al. Long noncoding RNAs in kidney and cardiovascular diseases , 2016, Nature Reviews Nephrology.
[48] A. Bracken,et al. PRC2 mediated H3K27 methylations in cellular identity and cancer. , 2015, Current opinion in cell biology.
[49] Trey Ideker,et al. Cytoscape 2.8: new features for data integration and network visualization , 2010, Bioinform..
[50] Michael T. McManus,et al. Dicer1 and miR-219 Are Required for Normal Oligodendrocyte Differentiation and Myelination , 2010, Neuron.
[51] Stijn van Dongen,et al. Using MCL to extract clusters from networks. , 2012, Methods in molecular biology.
[52] A. Fatica,et al. Long non-coding RNAs: new players in cell differentiation and development , 2013, Nature Reviews Genetics.
[53] Jie Peng,et al. Isolation and culture of rat and mouse oligodendrocyte precursor cells , 2007, Nature Protocols.
[54] R. Jaenisch,et al. Generating genetically modified mice using CRISPR/Cas-mediated genome engineering , 2014, Nature Protocols.
[55] Q. Lu,et al. Myelinogenesis and Axonal Recognition by Oligodendrocytes in Brain Are Uncoupled in Olig1-Null Mice , 2005, The Journal of Neuroscience.
[56] Howard Y. Chang,et al. Unique features of long non-coding RNA biogenesis and function , 2015, Nature Reviews Genetics.
[57] K. Hahn,et al. An orally bioavailable chemical probe of the Lysine Methyltransferases EZH2 and EZH1. , 2013, ACS chemical biology.
[58] Jun S. Song,et al. Integration of genome-wide approaches identifies lncRNAs of adult neural stem cells and their progeny in vivo. , 2013, Cell stem cell.
[59] M Dugas,et al. A Generic Concept for Large-scale Microarray Analysis Dedicated to Medical Diagnostics , 2006, Methods of Information in Medicine.
[60] Howard Y. Chang,et al. Long Noncoding RNA as Modular Scaffold of Histone Modification Complexes , 2010, Science.
[61] M. Olah,et al. Dynamic Changes in Ezh2 Gene Occupancy Underlie Its Involvement in Neural Stem Cell Self-Renewal and Differentiation towards Oligodendrocytes , 2012, PloS one.
[62] Rudolf Jaenisch,et al. One-Step Generation of Mice Carrying Mutations in Multiple Genes by CRISPR/Cas-Mediated Genome Engineering , 2013, Cell.
[63] A. Bhan,et al. Long Noncoding RNAs: Emerging Stars in Gene Regulation, Epigenetics and Human Disease , 2014, ChemMedChem.
[64] Robin J. M. Franklin,et al. Remyelination in the CNS: from biology to therapy , 2008, Nature Reviews Neuroscience.