Surface Interactome in Streptococcus pyogenes*

Very few studies have so far been dedicated to the systematic analysis of protein interactions occurring between surface and/or secreted proteins in bacteria. Such interactions are expected to play pivotal biological roles that deserve investigation. Taking advantage of the availability of a detailed map of surface and secreted proteins in Streptococcus pyogenes (group A Streptococcus (GAS)), we used protein array technology to define the “surface interactome” in this important human pathogen. Eighty-three proteins were spotted on glass slides in high density format, and each of the spotted proteins was probed for its capacity to interact with any of the immobilized proteins. A total of 146 interactions were identified, 25 of which classified as “reciprocal,” namely, interactions that occur irrespective of which of the two partners was immobilized on the chip or in solution. Several of these interactions were validated by surface plasmon resonance and supported by confocal microscopy analysis of whole bacterial cells. By this approach, a number of interesting interactions have been discovered, including those occurring between OppA, DppA, PrsA, and TlpA, proteins known to be involved in protein folding and transport. These proteins, all localizing at the septum, might be part, together with HtrA, of the recently described ExPortal complex of GAS. Furthermore, SpeI was found to strongly interact with the metal transporters AdcA and Lmb. Because SpeI strictly requires zinc to exert its function, this finding provides evidence on how this superantigen, a major player in GAS pathogenesis, can acquire the metal in the host environment, where it is largely sequestered by carrier proteins. We believe that the approach proposed herein can lead to a deeper knowledge of the mechanisms underlying bacterial invasion, colonization, and pathogenesis.

[1]  M. Hecker,et al.  Surface shaving as a versatile tool to profile global interactions between human serum proteins and the Staphylococcus aureus cell surface , 2011, Proteomics.

[2]  J. Bernhardt,et al.  Systems-wide temporal proteomic profiling in glucose-starved Bacillus subtilis , 2010, Nature communications.

[3]  D. Giedroc,et al.  Coordination chemistry of bacterial metal transport and sensing. , 2009, Chemical reviews.

[4]  I. Margarit,et al.  Capturing host‐pathogen interactions by protein microarrays: identification of novel streptococcal proteins binding to human fibronectin, fibrinogen, and C4BP , 2009, FASEB journal : official publication of the Federation of American Societies for Experimental Biology.

[5]  I. Margarit,et al.  Surfome Analysis as a Fast Track to Vaccine Discovery , 2009, Molecular & Cellular Proteomics.

[6]  U. Landegren,et al.  Characterizing proteins and their interactions in cells and tissues using the in situ proximity ligation assay. , 2008, Methods.

[7]  Eric Koesema,et al.  Combining the polymerase incomplete primer extension method for cloning and mutagenesis with microscreening to accelerate structural genomics efforts , 2008, Proteins.

[8]  Alex Bateman,et al.  Large-scale screening for novel low-affinity extracellular protein interactions. , 2008, Genome research.

[9]  G. Grandi,et al.  Proteomics Characterization of Outer Membrane Vesicles from the Extraintestinal Pathogenic Escherichia coli ΔtolR IHE3034 Mutant*S , 2008, Molecular & Cellular Proteomics.

[10]  V. Nizet,et al.  Role of group A Streptococcus HtrA in the maturation of SpeB protease , 2007, Proteomics.

[11]  Carolina Wählby,et al.  In Situ Detection of Phosphorylated Platelet-derived Growth Factor Receptor β Using a Generalized Proximity Ligation Method* , 2007, Molecular & Cellular Proteomics.

[12]  D. L. Cox,et al.  The general transition metal (Tro) and Zn2+ (Znu) transporters in Treponema pallidum: analysis of metal specificities and expression profiles , 2007, Molecular microbiology.

[13]  C. Herfst,et al.  Crystal structure of the streptococcal superantigen SpeI and functional role of a novel loop domain in T cell activation by group V superantigens. , 2007, Journal of molecular biology.

[14]  M. Yogavel,et al.  Structural Analysis of ABC-family Periplasmic Zinc Binding Protein Provides New Insights Into Mechanism of Ligand Uptake and Release , 2007, Journal of molecular biology.

[15]  Benjamin A. Shoemaker,et al.  Deciphering Protein–Protein Interactions. Part I. Experimental Techniques and Databases , 2007, PLoS Comput. Biol..

[16]  R. Zagursky,et al.  Proteomic Analysis and Identification of Streptococcus pyogenes Surface-Associated Proteins , 2006, Journal of bacteriology.

[17]  U. Landegren,et al.  Direct observation of individual endogenous protein complexes in situ by proximity ligation , 2006, Nature Methods.

[18]  D. Stevens,et al.  Identification and Characterization of Bicistronic speB and prsA Gene Expression in the Group A Streptococcus , 2006, Journal of bacteriology.

[19]  G. Grandi,et al.  Outer membrane vesicles from group B Neisseria meningitidis Δgna33 mutant: Proteomic and immunological comparison with detergent‐derived outer membrane vesicles , 2006, Proteomics.

[20]  G. Bensi,et al.  Characterization and identification of vaccine candidate proteins through analysis of the group A Streptococcus surface proteome , 2006, Nature Biotechnology.

[21]  Susan Jones Gene regulation: The logic of sharing , 2006, Nature Reviews Microbiology.

[22]  Jason E Stajich,et al.  Comparative analysis of Saccharomyces cerevisiae WW domains and their interacting proteins , 2006, Genome Biology.

[23]  G. Bensi,et al.  Group A Streptococcus produce pilus-like structures containing protective antigens and Lancefield T antigens , 2005, Proceedings of the National Academy of Sciences of the United States of America.

[24]  A. Sjöberg,et al.  Production of milligram quantities of affinity tagged-proteins using automated multistep chromatographic purification. , 2005, Journal of chromatography. A.

[25]  H. Tettelin,et al.  Identification of a Universal Group B Streptococcus Vaccine by Multiple Genome Screen , 2005, Science.

[26]  S. Bron,et al.  Post-translocational folding of secretory proteins in Gram-positive bacteria. , 2004, Biochimica et biophysica acta.

[27]  J. Musser,et al.  Progress toward characterization of the group A Streptococcus metagenome: complete genome sequence of a macrolide-resistant serotype M6 strain. , 2004, The Journal of infectious diseases.

[28]  J. Rosch,et al.  A Microdomain for Protein Secretion in Gram-Positive Bacteria , 2004, Science.

[29]  Jonas Jarvius,et al.  Cytokine detection by antibody-based proximity ligation. , 2004, Proceedings of the National Academy of Sciences of the United States of America.

[30]  M. Hecker,et al.  Structure-Function Analysis of PrsA Reveals Roles for the Parvulin-like and Flanking N- and C-terminal Domains in Protein Folding and Secretion in Bacillus subtilis* , 2004, Journal of Biological Chemistry.

[31]  J. Musser,et al.  Identification of new candidate vaccine antigens made by Streptococcus pyogenes: purification and characterization of 16 putative extracellular lipoproteins. , 2004, The Journal of infectious diseases.

[32]  Darren R Flower,et al.  Proteomics in Vaccinology and Immunobiology: An Informatics Perspective of the Immunone , 2003, Journal of biomedicine & biotechnology.

[33]  P. Shannon,et al.  Cytoscape: a software environment for integrated models of biomolecular interaction networks. , 2003, Genome research.

[34]  J. Musser,et al.  Group A Streptococcus Gene Expression in Humans and Cynomolgus Macaques with Acute Pharyngitis , 2003, Infection and Immunity.

[35]  K. Raymond,et al.  Enterobactin: An archetype for microbial iron transport , 2003, Proceedings of the National Academy of Sciences of the United States of America.

[36]  M. Snyder,et al.  Protein chip technology. , 2003, Current opinion in chemical biology.

[37]  Meng-Yao Liu,et al.  Genome sequence of a serotype M3 strain of group A Streptococcus: Phage-encoded toxins, the high-virulence phenotype, and clone emergence , 2002, Proceedings of the National Academy of Sciences of the United States of America.

[38]  U. Landegren,et al.  Protein detection using proximity-dependent DNA ligation assays , 2002, Nature Biotechnology.

[39]  D. Bessen,et al.  Genomic Localization of a T Serotype Locus to a Recombinatorial Zone Encoding Extracellular Matrix-Binding Proteins in Streptococcus pyogenes , 2002, Infection and Immunity.

[40]  Gary D Bader,et al.  Systematic identification of protein complexes in Saccharomyces cerevisiae by mass spectrometry , 2002, Nature.

[41]  P. Bork,et al.  Functional organization of the yeast proteome by systematic analysis of protein complexes , 2002, Nature.

[42]  R. Macnab,et al.  The role in flagellar rod assembly of the N-terminal domain of Salmonella FlgJ, a flagellum-specific muramidase. , 2001, Journal of molecular biology.

[43]  R. Ozawa,et al.  A comprehensive two-hybrid analysis to explore the yeast protein interactome , 2001, Proceedings of the National Academy of Sciences of the United States of America.

[44]  J. Venter,et al.  Identification of vaccine candidates against serogroup B meningococcus by whole-genome sequencing. , 2000, Science.

[45]  James R. Knight,et al.  A comprehensive analysis of protein–protein interactions in Saccharomyces cerevisiae , 2000, Nature.

[46]  K. Nakai Protein sorting signals and prediction of subcellular localization. , 2000, Advances in protein chemistry.

[47]  A. Podbielski,et al.  The group A streptococcal dipeptide permease (Dpp) is involved in the uptake of essential amino acids and affects the expression of cysteine protease , 1998, Molecular microbiology.

[48]  Ralf Janknecht,et al.  Ras/Rap effector specificity determined by charge reversal , 1996, Nature Structural Biology.

[49]  M. Sarvas,et al.  The PrsA lipoprotein is essential for protein secretion in Bacillus subtilis and sets a limit for high‐level secretion , 1993, Molecular microbiology.

[50]  H. Delves,et al.  Albumin bound and alpha 2-macroglobulin bound zinc concentrations in the sera of healthy adults. , 1984, Journal of clinical pathology.

[51]  E. Gotschlich,et al.  ELECTRON MICROSCOPIC STUDIES ON STREPTOCOCCI , 1969, The Journal of experimental medicine.

[52]  R. Cole,et al.  Cell Wall Replication in Streptococcus pyogenes , 1962, Science.