Trinity : reconstructing a full-length transcriptome without a genome from RNA-Seq data
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N. Friedman | M. Grabherr | B. Haas | M. Yassour | J. Levin | D. Thompson | I. Amit | X. Adiconis | Lin Fan | R. Raychowdhury | Q. Zeng | Zehua Chen | E. Mauceli | N. Hacohen | A. Gnirke | N. Rhind | F. Di Palma | B. Birren | C. Nusbaum | K. Lindblad-Toh | A. Regev | Dawn A Thompson | Qiandong Zeng | Federica Di Palma | Federica di Palma | Xian Adiconis | Nicholas Rhind
[1] Manolis Kellis,et al. Comparative Functional Genomics of the Fission Yeasts , 2011, Science.
[2] Steven J. M. Jones,et al. De novo assembly and analysis of RNA-seq data , 2010, Nature Methods.
[3] N. Friedman,et al. Strand-specific RNA sequencing reveals extensive regulated long antisense transcripts that are conserved across yeast species , 2010, Genome Biology.
[4] N. Friedman,et al. Comprehensive comparative analysis of strand-specific RNA sequencing methods , 2010, Nature Methods.
[5] Cole Trapnell,et al. Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation. , 2010, Nature biotechnology.
[6] J. Rinn,et al. Ab initio reconstruction of transcriptomes of pluripotent and lineage committed cells reveals gene structures of thousands of lincRNAs , 2010, Nature Biotechnology.
[7] Miriah D. Meyer,et al. Genome-wide synteny through highly sensitive sequence alignment: Satsuma , 2010, Bioinform..
[8] B. Haas,et al. Advancing RNA-Seq analysis , 2010, Nature Biotechnology.
[9] Chuan-Xi Zhang,et al. De novo characterization of a whitefly transcriptome and analysis of its gene expression during development , 2010, BMC Genomics.
[10] Inanç Birol,et al. De novo transcriptome assembly with ABySS , 2009, Bioinform..
[11] Siu-Ming Yiu,et al. SOAP2: an improved ultrafast tool for short read alignment , 2009, Bioinform..
[12] T. Borodina,et al. Transcriptome analysis by strand-specific sequencing of complementary DNA , 2009, Nucleic acids research.
[13] Lior Pachter,et al. Sequence Analysis , 2020, Definitions.
[14] Hunter B. Fraser,et al. Ab initio construction of a eukaryotic transcriptome by massively parallel mRNA sequencing , 2009, Proceedings of the National Academy of Sciences.
[15] L. Steinmetz,et al. Bidirectional promoters generate pervasive transcription in yeast , 2009, Nature.
[16] Eric T. Wang,et al. Alternative Isoform Regulation in Human Tissue Transcriptomes , 2008, Nature.
[17] I. Goodhead,et al. Dynamic repertoire of a eukaryotic transcriptome surveyed at single-nucleotide resolution , 2008, Nature.
[18] C. Nusbaum,et al. ALLPATHS: de novo assembly of whole-genome shotgun microreads. , 2008, Genome research.
[19] E. Birney,et al. Velvet: algorithms for de novo short read assembly using de Bruijn graphs. , 2008, Genome research.
[20] N. Friedman,et al. Natural history and evolutionary principles of gene duplication in fungi , 2007, Nature.
[21] Cathy H. Wu,et al. The Universal Protein Resource (UniProt): an expanding universe of protein information , 2005, Nucleic Acids Res..
[22] Steven Salzberg,et al. Beware of mis-assembled genomes , 2005, Bioinform..
[23] F. Clark,et al. Understanding alternative splicing: towards a cellular code , 2005, Nature Reviews Molecular Cell Biology.
[24] Thomas D. Wu,et al. GMAP: a genomic mapping and alignment program for mRNA and EST sequence , 2005, Bioinform..
[25] Pavel A. Pevzner,et al. De novo identification of repeat families in large genomes , 2005, ISMB.
[26] Matthew Berriman,et al. GeneDB: a resource for prokaryotic and eukaryotic organisms , 2004, Nucleic Acids Res..
[27] W. J. Kent,et al. BLAT--the BLAST-like alignment tool. , 2002, Genome research.
[28] P. Pevzner,et al. An Eulerian path approach to DNA fragment assembly , 2001, Proceedings of the National Academy of Sciences of the United States of America.
[29] H. Nojima,et al. Comprehensive isolation of meiosis-specific genes identifies novel proteins and unusual non-coding transcripts in Schizosaccharomyces pombe. , 2001, Nucleic acids research.
[30] B. Graveley. Alternative splicing: increasing diversity in the proteomic world. , 2001, Trends in genetics : TIG.
[31] Y. Hiraoka,et al. Characterization of rec7, an early meiotic recombination gene in Schizosaccharomyces pombe. , 2001, Genetics.
[32] Akademie van Wetenschappen,et al. Koninklijke Nederlandse Akademie Van Wetenschappen , 2001 .
[33] C. Shimoda,et al. The Schizosaccharomyces pombe spo6+ gene encoding a nuclear protein with sequence similarity to budding yeast Dbf4 is required for meiotic second division and sporulation , 2000, Genes to cells : devoted to molecular & cellular mechanisms.
[34] Aaron D. Wyner,et al. Prediction and Entropy of Printed English , 1993 .
[35] C. Hyltén-Cavallius. On a combinatorical problem , 1958 .
[36] Claude E. Shannon,et al. Prediction and Entropy of Printed English , 1951 .
[37] I. Good. Normal Recurring Decimals , 1946 .