Single-trait and multi-trait genome-wide association analyses identify novel loci for blood pressure in African-ancestry populations

Hypertension is a leading cause of global disease, mortality, and disability. While individuals of African descent suffer a disproportionate burden of hypertension and its complications, they have been underrepresented in genetic studies. To identify novel susceptibility loci for blood pressure and hypertension in people of African ancestry, we performed both single and multiple-trait genome-wide association analyses. We analyzed 21 genome-wide association studies comprised of 31,968 individuals of African ancestry, and validated our results with additional 54,395 individuals from multi-ethnic studies. These analyses identified nine loci with eleven independent variants which reached genome-wide significance (P < 1.25×10−8) for either systolic and diastolic blood pressure, hypertension, or for combined traits. Single-trait analyses identified two loci (TARID/TCF21 and LLPH/TMBIM4) and multiple-trait analyses identified one novel locus (FRMD3) for blood pressure. At these three loci, as well as at GRP20/CDH17, associated variants had alleles common only in African-ancestry populations. Functional annotation showed enrichment for genes expressed in immune and kidney cells, as well as in heart and vascular cells/tissues. Experiments driven by these findings and using angiotensin-II induced hypertension in mice showed altered kidney mRNA expression of six genes, suggesting their potential role in hypertension. Our study provides new evidence for genes related to hypertension susceptibility, and the need to study African-ancestry populations in order to identify biologic factors contributing to hypertension.

Xiaofeng Zhu | Tamar Sofer | Joshua C Denny | Todd L Edwards | Jianwen Cai | Wonji Kim | Sungho Won | Charles Kooperberg | Eric Boerwinkle | Juyoung Lee | Erin B Ware | Sharon L R Kardia | Kenneth Rice | Walter Palmas | Karen Schwander | Donna K Arnett | Steven C Hunt | George J Papanicolaou | Charles Rotimi | Kyle J. Gaulton | Bruce M Psaty | Susan Redline | Yingchang Lu | Guanjie Chen | Jacqueline M Lane | Wei Zhao | Aravinda Chakravarti | Xiuqing Guo | Daniel Levy | D C Rao | Qin Hui | Hua Tang | Adebowale Adeyemo | Myriam Fornage | Nora Franceschini | Yan V Sun | Yan V. Sun | Alex P Reiner | Cathy C Laurie | Alanna C Morrison | Kiang Liu | Richard S Cooper | M. Fornage | M. Nalls | A. Reiner | D. Levy | J. Lane | S. Redline | E. Boerwinkle | N. Risch | C. Rotimi | A. Adeyemo | Hua Tang | A. Chakravarti | A. Zonderman | M. Evans | S. Kardia | J. Polak | B. Psaty | R. Cooper | K. Taylor | J. Rotter | J. Denny | D. Rao | D. Becker | T. Sofer | G. Papanicolaou | C. Laurie | K. Rice | Xiaofeng Zhu | Xiuqing Guo | R. Jackson | E. Bottinger | S. Hunt | Jennifer A. Smith | Wei Zhao | J. Faul | D. Weir | D. Arnett | T. Mosley | N. Franceschini | S. Musani | K. Schwander | S. Tajuddin | B. Tayo | E. Ware | L. Yanek | T. Forrester | C. Mckenzie | C. Kooperberg | W. Palmas | A. Morrison | R. Loos | Kiang Liu | Jianwen Cai | S. Won | Yingchang Lu | T. Edwards | D. V. Edwards | Juyoung Lee | Guanjie Chen | Jié Zhou | A. Cappola | Q. Hui | A. Dreisbach | J. H. Young | R. Jensen | Heming Wang | K. Wiggins | A. Penman | T. Le | L. Martin | Diane M Becker | Michele K Evans | Alan B Zonderman | Jerome I Rotter | Michael A Nalls | Joseph F Polak | Lisa R Yanek | Thomas H Mosley | Digna R Velez Edwards | David R Weir | Ruth J F Loos | Thu H Le | Solomon K Musani | Neil Risch | Jennifer A Smith | Alan D Penman | Rebecca D Jackson | M. Bray | Jessica D Faul | Kyle J Gaulton | Erwin P Bottinger | Richard A Jensen | Jie Zhou | J Hunter Young | Bamidele O Tayo | Albert W Dreisbach | J. Kayima | Wonji Kim | Ervin F Fox | Jingjing Liang | S. Cechova | Pei-Lun Chu | Salman M Tajuddin | Kerri L Wiggins | Jingjing Liang | Terrence Forrester | Colin A McKenzie | Lisa W Martin | Sylvia Cechova | Heming Wang | James Kayima | Ervin Fox | Pei-Lun Chu | Anne Cappola | Michael Bray | Ken D Taylor | Sungho Won | K. Gaulton | D. Rao | Xiaofeng Zhu | R. Jackson | Yan V. Sun | Wei Zhao | C. McKenzie | B. Psaty | R. Loos | Ervin F. Fox | K. Taylor | D. Levy | Wei Zhao | Jennifer A. Smith | K. Taylor | R. Jackson | S. Kardia | R. Cooper

[1]  R. Kronmal,et al.  T‐Helper Type 1 Bias in Healthy People Is Associated With Cytomegalovirus Serology and Atherosclerosis: The Multi‐Ethnic Study of Atherosclerosis , 2013, Journal of the American Heart Association.

[2]  Haifeng Guo,et al.  US Renal Data System 2012 Annual Data Report. , 2013, American journal of kidney diseases : the official journal of the National Kidney Foundation.

[3]  J. Pritchard,et al.  A Map of Recent Positive Selection in the Human Genome , 2006, PLoS biology.

[4]  Xiaofeng Zhu,et al.  Meta-analysis of correlated traits via summary statistics from GWASs with an application in hypertension. , 2015, American journal of human genetics.

[5]  D. Mozaffarian,et al.  Executive summary: heart disease and stroke statistics--2012 update: a report from the American Heart Association. , 2012, Circulation.

[6]  Michiel M T van Dommelen,et al.  Human Golgi antiapoptotic protein modulates intracellular calcium fluxes. , 2009, Molecular biology of the cell.

[7]  R. Elston,et al.  A whole-genome scan for obstructive sleep apnea and obesity. , 2003, American journal of human genetics.

[8]  C. Lewis,et al.  Association of race and sex with risk of incident acute coronary heart disease events. , 2012, JAMA.

[9]  R. Carey,et al.  Renal Collectrin Protects against Salt-Sensitive Hypertension and Is Downregulated by Angiotensin II. , 2017, Journal of the American Society of Nephrology : JASN.

[10]  S B Hulley,et al.  CARDIA: study design, recruitment, and some characteristics of the examined subjects. , 1988, Journal of clinical epidemiology.

[11]  He Gao,et al.  Genome-wide association analysis identifies novel blood pressure loci and offers biological insights into cardiovascular risk , 2017, Nature Genetics.

[12]  R. Collins,et al.  Age-specific relevance of usual blood pressure to vascular mortality: a meta-analysis of individual data for one million adults in 61 prospective studies , 2002, The Lancet.

[13]  J. Pollock,et al.  TNF-α inhibition reduces renal injury in DOCA-salt hypertensive rats , 2008 .

[14]  C. Yancy,et al.  Heart failure in African Americans: Disparities can be overcome , 2014, Cleveland Clinic Journal of Medicine.

[15]  Pei-Wen Cheng,et al.  Wnt Signaling Regulates Blood Pressure by Downregulating a GSK-3β–Mediated Pathway to Enhance Insulin Signaling in the Central Nervous System , 2015, Diabetes.

[16]  D. Reich,et al.  Principal components analysis corrects for stratification in genome-wide association studies , 2006, Nature Genetics.

[17]  I. Borecki,et al.  A combined analysis of genomewide linkage scans for body mass index from the National Heart, Lung, and Blood Institute Family Blood Pressure Program. , 2002, American journal of human genetics.

[18]  J. Marchini,et al.  Fast and accurate genotype imputation in genome-wide association studies through pre-phasing , 2012, Nature Genetics.

[19]  N. Franceschini,et al.  Genetics of hypertension: discoveries from the bench to human populations. , 2014, American journal of physiology. Renal physiology.

[20]  Anita L. DeStefano,et al.  Evidence for a Gene Influencing Blood Pressure on Chromosome 17: Genome Scan Linkage Results for Longitudinal Blood Pressure Phenotypes in Subjects From the Framingham Heart Study , 2000, Hypertension.

[21]  Claude Bouchard,et al.  Meta-analysis identifies common and rare variants influencing blood pressure and overlapping with metabolic trait loci , 2016, Nature Genetics.

[22]  Daniel W. Jones,et al.  The Seventh Report of the Joint National Committee on Prevention, Detection, Evaluation, and Treatment of High Blood Pressure: the JNC 7 report. , 2003, JAMA.

[23]  D. Harrison,et al.  Role of the T cell in the genesis of angiotensin II–induced hypertension and vascular dysfunction , 2007, The Journal of experimental medicine.

[24]  Daniel L. McGee,et al.  The prevalence of hypertension in seven populations of west African origin. , 1997, American journal of public health.

[25]  Xiaofeng Zhu,et al.  Association mapping, using a mixture model for complex traits , 2002, Genetic epidemiology.

[26]  M. Campbell,et al.  PANTHER: a library of protein families and subfamilies indexed by function. , 2003, Genome research.

[27]  P. Ordunez,et al.  Evaluation of an electronic blood pressure device for epidemiological studies. , 1997, Blood pressure monitoring.

[28]  M. Daly,et al.  An Atlas of Genetic Correlations across Human Diseases and Traits , 2015, Nature Genetics.

[29]  C. Rotimi,et al.  A genome-wide search for type 2 diabetes susceptibility genes in West Africans: the Africa America Diabetes Mellitus (AADM) Study. , 2004, Diabetes.

[30]  S. Del Prato,et al.  Lack of association between TGF-beta-1 genotypes and microalbuminuria in essential hypertensive men. , 2009, Nephrology, dialysis, transplantation : official publication of the European Dialysis and Transplant Association - European Renal Association.

[31]  H. Jacob,et al.  Mutation of SH2B3 (LNK), a Genome-Wide Association Study Candidate for Hypertension, Attenuates Dahl Salt-Sensitive Hypertension via Inflammatory Modulation , 2015, Hypertension.

[32]  M. Burtscher Lifetime risks of cardiovascular disease. , 2012, The New England journal of medicine.

[33]  Zoltán Kutalik,et al.  Quality control and conduct of genome-wide association meta-analyses , 2014, Nature Protocols.

[34]  Xiaofeng Zhu,et al.  Genome-wide association analysis of blood-pressure traits in African-ancestry individuals reveals common associated genes in African and non-African populations. , 2013, American journal of human genetics.

[35]  E. Blasi,et al.  Aldosterone/salt induces renal inflammation and fibrosis in hypertensive rats. , 2003, Kidney international.

[36]  P. Hamet,et al.  The angiotensin II type 1 receptor and receptor-associated proteins , 2001, Cell Research.

[37]  Jianwen Cai,et al.  Impact of body mass index on incident hypertension and diabetes in Chinese Asians, American Whites, and American Blacks: the People's Republic of China Study and the Atherosclerosis Risk in Communities Study. , 2008, American journal of epidemiology.

[38]  Tom R. Gaunt,et al.  Genetic Variants in Novel Pathways Influence Blood Pressure and Cardiovascular Disease Risk , 2011, Nature.

[39]  M. Arai,et al.  Association of a transcription factor 21 gene polymorphism with hypertension. , 2015, Biomedical reports.

[40]  J. Pollock,et al.  TNF‐alpha inhibition reduces renal injury in DOCA‐salt hypertensive rats , 2007, American journal of physiology. Regulatory, integrative and comparative physiology.

[41]  Taesung Park,et al.  A large-scale genome-wide association study of Asian populations uncovers genetic factors influencing eight quantitative traits , 2009, Nature Genetics.

[42]  Ayellet V. Segrè,et al.  Common Inherited Variation in Mitochondrial Genes Is Not Enriched for Associations with Type 2 Diabetes or Related Glycemic Traits , 2010, PLoS genetics.

[43]  G. Bultynck,et al.  The transmembrane Bax inhibitor motif (TMBIM) containing protein family: Tissue expression, intracellular localization and effects on the ER CA²⁺-filling state. , 2015, Biochimica et biophysica acta.

[44]  J. Chifamba,et al.  Emerging non-communicable disease epidemic in Africa: preventive measures from the WHO Regional Office for Africa. , 2006, Ethnicity & disease.

[45]  Charles Rotimi,et al.  A Genome-Wide Association Study of Hypertension and Blood Pressure in African Americans , 2009, PLoS genetics.

[46]  Joseph T. Glessner,et al.  Combined admixture mapping and association analysis identifies a novel blood pressure genetic locus on 5p13: contributions from the CARe consortium. , 2011, Human molecular genetics.

[47]  Alan D. Lopez,et al.  A comparative risk assessment of burden of disease and injury attributable to 67 risk factors and risk factor clusters in 21 regions, 1990–2010: a systematic analysis for the Global Burden of Disease Study 2010 , 2012, The Lancet.

[48]  N. Risch,et al.  Admixture mapping for hypertension loci with genome-scan markers , 2005, Nature Genetics.

[49]  M. Daly,et al.  LD Score regression distinguishes confounding from polygenicity in genome-wide association studies , 2014, Nature Genetics.

[50]  W. Elliott Resistant Hypertension: Diagnosis, Evaluation, and Treatment: A Scientific Statement From the American Heart Association Professional Education Committee of the Council for High Blood Pressure Research , 2009 .

[51]  Xiaofeng Zhu,et al.  The genetics of blood pressure regulation and its target organs from association studies in 342,415 individuals , 2016, Nature Genetics.

[52]  Yakir A Reshef,et al.  Partitioning heritability by functional annotation using genome-wide association summary statistics , 2015, Nature Genetics.

[53]  J. Rossant,et al.  The basic-helix-loop-helix protein pod1 is critically important for kidney and lung organogenesis. , 1999, Development.

[54]  M. Andrew,et al.  Recruiting African-American research participation in the Jackson Heart Study: methods, response rates, and sample description. , 2005, Ethnicity & disease.

[55]  Joseph K. Pickrell Joint analysis of functional genomic data and genome-wide association studies of 18 human traits , 2013, bioRxiv.

[56]  J. Li,et al.  Adjusting multiple testing in multilocus analyses using the eigenvalues of a correlation matrix , 2005, Heredity.

[57]  N. Schork,et al.  The genetics of hypertension. , 1995, Current opinion in genetics & development.

[58]  Yun Li,et al.  METAL: fast and efficient meta-analysis of genomewide association scans , 2010, Bioinform..

[59]  D. Harrison,et al.  Interleukin 17 Promotes Angiotensin II–Induced Hypertension and Vascular Dysfunction , 2010, Hypertension.

[60]  A. Folsom,et al.  Racial and Regional Differences in Venous Thromboembolism in the United States in 3 Cohorts , 2014, Circulation.

[61]  Andrew D. Johnson,et al.  Genome-wide association study of blood pressure and hypertension , 2009, Nature Genetics.

[62]  L. Canani,et al.  FRMD3 gene: its role in diabetic kidney disease. A narrative review , 2015, Diabetology & Metabolic Syndrome.

[63]  C. Winkler,et al.  Association of Trypanolytic ApoL1 Variants with Kidney Disease in African Americans , 2010, Science.

[64]  Scott M. Williams,et al.  The Association of the Vanin-1 N131S Variant with Blood Pressure Is Mediated by Endoplasmic Reticulum-Associated Degradation and Loss of Function , 2014, PLoS genetics.

[65]  Tien Yin Wong,et al.  Meta-analysis of genome-wide association studies identifies common variants associated with blood pressure variation in east Asians , 2011, Nature Genetics.

[66]  Jing He,et al.  Trans-ancestry genome-wide association study identifies 12 genetic loci influencing blood pressure and implicates a role for DNA methylation , 2015, Nature Genetics.

[67]  A. Unger,et al.  Racial disparities in hypertension prevalence, awareness, and management. , 2005, Archives of internal medicine.

[68]  C. Rotimi,et al.  Genome-wide association study identifies African-ancestry specific variants for metabolic syndrome. , 2015, Molecular genetics and metabolism.

[69]  Kenny Q. Ye,et al.  An integrated map of genetic variation from 1,092 human genomes , 2012, Nature.

[70]  R. Cooper,et al.  Genome-wide association studies: implications for multiethnic samples. , 2008, Human molecular genetics.

[71]  Anders M. Dale,et al.  Identifying Common Genetic Variants in Blood Pressure Due to Polygenic Pleiotropy With Associated Phenotypes , 2014, Hypertension.

[72]  北村 聖 "The New England Journal of Medicine". , 1962, British medical journal.

[73]  P. Donnelly,et al.  A Flexible and Accurate Genotype Imputation Method for the Next Generation of Genome-Wide Association Studies , 2009, PLoS genetics.

[74]  M A Espeland,et al.  The Women's Health Initiative Memory Study (WHIMS): a trial of the effect of estrogen therapy in preventing and slowing the progression of dementia. , 1998, Controlled clinical trials.

[75]  P. Mahadevan,et al.  An overview , 2007, Journal of Biosciences.

[76]  N. Fisher,et al.  The renin-angiotensin system in blacks: Active, passive, or what? , 2003, Current hypertension reports.

[77]  He Zhang,et al.  Trans-ancestry meta-analyses identify rare and common variants associated with blood pressure and hypertension , 2016, Nature Genetics.

[78]  C. Moy,et al.  Racial differences in the impact of elevated systolic blood pressure on stroke risk. , 2013, JAMA internal medicine.

[79]  P. Visscher,et al.  GCTA: a tool for genome-wide complex trait analysis. , 2011, American journal of human genetics.

[80]  N. Schork,et al.  Pathway analysis of seven common diseases assessed by genome-wide association. , 2008, Genomics.

[81]  R. Cooper,et al.  Admixture Mapping Provides Evidence of Association of the VNN1 Gene with Hypertension , 2007, PloS one.

[82]  C. McCulloch,et al.  Elevated blood pressure and risk of end-stage renal disease in subjects without baseline kidney disease. , 2005, Archives of internal medicine.

[83]  C. Rotimi,et al.  Heritability of angiotensin-converting enzyme and angiotensinogen: A comparison of US blacks and Nigerians. , 2000, Hypertension.

[84]  Colin W. Taylor,et al.  hGAAP promotes cell adhesion and migration via the stimulation of store-operated Ca2+ entry and calpain 2 , 2013, The Journal of cell biology.

[85]  C. Panis,et al.  Hypertension is associated with serologically active disease in patients with systemic lupus erythematosus: role of increased Th1/Th2 ratio and oxidative stress , 2014, Scandinavian journal of rheumatology.

[86]  D. Mattson,et al.  Infiltrating immune cells in the kidney in salt-sensitive hypertension and renal injury. , 2014, American journal of physiology. Renal physiology.

[87]  Jon Wakefield,et al.  A Bayesian measure of the probability of false discovery in genetic epidemiology studies. , 2007, American journal of human genetics.

[88]  P. Visscher,et al.  Conditional and joint multiple-SNP analysis of GWAS summary statistics identifies additional variants influencing complex traits , 2012, Nature Genetics.

[89]  N. Samani Genome scans for hypertension and blood pressure regulation. , 2003, American journal of hypertension.

[90]  L. Smeeth,et al.  Hypertension In Sub-Saharan Africa: A Systematic Review , 2007, Hypertension.

[91]  U. Ikeda,et al.  Adeno‐associated virus vector‐mediated systemic interleukin‐10 expression ameliorates hypertensive organ damage in Dahl salt‐sensitive rats , 2008, The journal of gene medicine.

[92]  D. Harrison,et al.  The immune system in hypertension. , 2014, Advances in physiology education.

[93]  S. Lederman,et al.  Identification of a novel surface protein on activated CD4+ T cells that induces contact-dependent B cell differentiation (help) , 1992, The Journal of experimental medicine.