Asparagine Repeats in Plasmodium falciparum Proteins: Good for Nothing?

Malaria is a deadly parasitic human disease that poses a significant health risk for about 3.3 billion people in the tropical and subtropical regions of the world [1]. The past decade has seen significant progress in our understanding of the biology of the most deadly parasite species, Plasmodium falciparum. The groundwork for this progress was laid by genome sequencing efforts that revealed a number of surprising features [2], [3]. One striking aspect of this extreme AT-rich genome is the abundance of trinucleotide repeats (predominantly AAT) coding for asparagine [3]. The wealth of low-complexity regions in P. falciparum proteins had been known prior to sequencing of the genome but not the overabundance of simple amino acid repeats [4].

[1]  R. Riek,et al.  The Mechanism of Toxicity in HET-S/HET-s Prion Incompatibility , 2012, PLoS biology.

[2]  M. DePristo,et al.  Low-complexity regions in Plasmodium falciparum: missing links in the evolution of an extreme genome. , 2010, Molecular biology and evolution.

[3]  John C. Wootton,et al.  Non-globular Domains in Protein Sequences: Automated Segmentation Using Complexity Measures , 1994, Comput. Chem..

[4]  Bonnie Berger,et al.  Opposing effects of glutamine and asparagine govern prion formation by intrinsically disordered proteins. , 2011, Molecular cell.

[5]  D. Goldberg,et al.  Asparagine repeat function in a Plasmodium falciparum protein assessed via a regulatable fluorescent affinity tag , 2011, Proceedings of the National Academy of Sciences.

[6]  Atanas V Koulov,et al.  Functional amyloid--from bacteria to humans. , 2007, Trends in biochemical sciences.

[7]  O. King,et al.  A Systematic Survey Identifies Prions and Illuminates Sequence Features of Prionogenic Proteins , 2009, Cell.

[8]  G. Singh,et al.  Hyper-expansion of asparagines correlates with an abundance of proteins with prion-like domains in Plasmodium falciparum. , 2004, Molecular and biochemical parasitology.

[9]  Austin L. Hughes,et al.  The Evolution of Amino Acid Repeat Arrays in Plasmodium and Other Organisms , 2004, Journal of Molecular Evolution.

[10]  M. Ferdig,et al.  Gene copy number and malaria biology. , 2009, Trends in parasitology.

[11]  Manuel A. S. Santos,et al.  Low Complexity Regions behave as tRNA sponges to help co‐translational folding of plasmodial proteins , 2010, FEBS letters.

[12]  J R Glover,et al.  Support for the Prion Hypothesis for Inheritance of a Phenotypic Trait in Yeast , 1996, Science.

[13]  Leon D. Segal,et al.  Functions , 1995 .

[14]  David L. Steffen,et al.  The genome of the social amoeba Dictyostelium discoideum , 2005, Nature.

[15]  C. Dobson,et al.  Protein misfolding, functional amyloid, and human disease. , 2006, Annual review of biochemistry.

[16]  R. Coppel,et al.  Repetitive proteins and genes of malaria. , 1987, Annual review of microbiology.

[17]  D. Forsdyke,et al.  Low-complexity segments in Plasmodium falciparum proteins are primarily nucleic acid level adaptations. , 2003, Molecular and biochemical parasitology.

[18]  S. Lindquist,et al.  Plasmodium falciparum heat shock protein 110 stabilizes the asparagine repeat-rich parasite proteome during malarial fevers , 2012, Nature Communications.

[19]  C. Dye,et al.  Worldwide Incidence of Malaria in 2009: Estimates, Time Trends, and a Critique of Methods , 2011, PLoS medicine.

[20]  Eric R. Kandel,et al.  Aplysia CPEB Can Form Prion-like Multimers in Sensory Neurons that Contribute to Long-Term Facilitation , 2010, Cell.

[21]  S. Lindquist,et al.  Hsp90 as a capacitor for morphological evolution , 1998, Nature.

[22]  S. Karlin,et al.  Amino acid runs in eukaryotic proteomes and disease associations , 2002, Proceedings of the National Academy of Sciences of the United States of America.

[23]  Jonathan E. Allen,et al.  Genome sequence of the human malaria parasite Plasmodium falciparum , 2002, Nature.

[24]  A. Dalby A Comparative Proteomic Analysis of the Simple Amino Acid Repeat Distributions in Plasmodia Reveals Lineage Specific Amino Acid Selection , 2009, PloS one.

[25]  A. Hughes,et al.  Biased amino acid composition in repeat regions of Plasmodium antigens. , 1999, Molecular biology and evolution.

[26]  L. Aravind,et al.  Plasmodium Biology Genomic Gleanings , 2003, Cell.

[27]  Michele Vendruscolo,et al.  Amyloid-like Aggregates Sequester Numerous Metastable Proteins with Essential Cellular Functions , 2011, Cell.