Segmentation of Oral Epithelial Dysplasias Employing Mask R-CNN and Color Normalization

Oral epithelial dysplasia is a common type of pre-cancerous lesion that can be categorized as mild, moderate and severe. The manual diagnosis of this type of lesion is a time consuming and complex task. The use of digital systems applied to microscopic image analysis can aid the decision making of specialists. In recent years, deep learning-based methods are getting more attention due to its improved results in nuclei segmentation tasks. In this paper, we propose a methodology for nuclei segmentation on images of dysplastic tissues using neural networks. Several optimization algorithms and color normalization methods were evaluated. The methodology was performed on a dataset of mice tongue images. The experimental evaluations showed that the Nadam optimizer in combination with images without the use of color normalization obtained the best results. The method was able to segment the images with an average accuracy of 0.887, the sensitivity of 0.762 and specificity of 0.942. The algorithm was compared to other segmentation methods and showed relevant results. These values indicate that the proposed method can be used as a tool to aid specialists in the nuclei analysis of histological images of the buccal cavity.

[1]  Marcelo Zanchetta do Nascimento,et al.  Automated Nuclei Segmentation on Dysplastic Oral Tissues Using CNN , 2020, 2020 International Conference on Systems, Signals and Image Processing (IWSSIP).

[2]  Ross B. Girshick,et al.  Mask R-CNN , 2017, 1703.06870.

[3]  Alessandro Santana Martins,et al.  Unsupervised method for normalization of hematoxylin-eosin stain in histological images , 2019, Comput. Medical Imaging Graph..

[4]  Kemal ADEM,et al.  Performance Analysis of Optimization Algorithms on Stacked Autoencoder , 2019, 2019 3rd International Symposium on Multidisciplinary Studies and Innovative Technologies (ISMSIT).

[5]  D. Kademani,et al.  Oral Epithelial Dysplasia , 2019, Improving Outcomes in Oral Cancer.

[6]  Moulay A. Akhloufi,et al.  Identifying the Cells' Nuclei Using Deep Learning , 2018, 2018 IEEE Life Sciences Conference (LSC).

[7]  Jiliu Zhou,et al.  Automated nasopharyngeal carcinoma segmentation in magnetic resonance images by combination of convolutional neural networks and graph cut , 2018, Experimental and therapeutic medicine.

[8]  A D Belsare,et al.  Breast histopathology image segmentation using spatio‐colour‐texture based graph partition method , 2016, Journal of microscopy.

[9]  Nassir Navab,et al.  Structure-Preserving Color Normalization and Sparse Stain Separation for Histological Images , 2016, IEEE Transactions on Medical Imaging.

[10]  Lawrence O. Hall,et al.  Nucleus segmentation in histology images with hierarchical multilevel thresholding , 2016, SPIE Medical Imaging.

[11]  Neeraj Kumar,et al.  Empirical comparison of color normalization methods for epithelial-stromal classification in H and E images , 2016, Journal of pathology informatics.

[12]  Wilhelm Burger,et al.  Digital Image Processing - An Algorithmic Introduction using Java , 2008, Texts in Computer Science.

[13]  Vinay Kumar,et al.  Robbins & Cotran patologia: bases patológicas das doenças , 2016 .

[14]  Eduardo Romero,et al.  Unsupervised color normalisation for H and E stained histopathology image analysis , 2015, Symposium on Medical Information Processing and Analysis.

[15]  Kaiming He,et al.  Faster R-CNN: Towards Real-Time Object Detection with Region Proposal Networks , 2015, IEEE Transactions on Pattern Analysis and Machine Intelligence.

[16]  Ross B. Girshick,et al.  Fast R-CNN , 2015, 1504.08083.

[17]  Mostafa Hosseini,et al.  Part 1: Simple Definition and Calculation of Accuracy, Sensitivity and Specificity , 2015, Emergency.

[18]  Saeed Kermani,et al.  Recognition of Acute Lymphoblastic Leukemia Cells in Microscopic Images Using K-Means Clustering and Support Vector Machine Classifier , 2015, Journal of medical signals and sensors.

[19]  H. Irshad,et al.  Methods for Nuclei Detection, Segmentation, and Classification in Digital Histopathology: A Review—Current Status and Future Potential , 2014, IEEE Reviews in Biomedical Engineering.

[20]  Leandro Alves Neves,et al.  Unsupervised segmentation method for cuboidal cell nuclei in histological prostate images based on minimum cross entropy , 2013, Expert Syst. Appl..

[21]  Chandan Chakraborty,et al.  Texture based segmentation of epithelial layer from oral histological images. , 2011, Micron.

[22]  Allan D. Jepson,et al.  Benchmarking Image Segmentation Algorithms , 2009, International Journal of Computer Vision.

[23]  A. Madabhushi,et al.  Histopathological Image Analysis: A Review , 2009, IEEE Reviews in Biomedical Engineering.

[24]  J. S. Marron,et al.  A method for normalizing histology slides for quantitative analysis , 2009, 2009 IEEE International Symposium on Biomedical Imaging: From Nano to Macro.

[25]  Erik Reinhard,et al.  Color Transfer between Images , 2001, IEEE Computer Graphics and Applications.

[26]  H Lumerman,et al.  Oral epithelial dysplasia and the development of invasive squamous cell carcinoma. , 1995, Oral surgery, oral medicine, oral pathology, oral radiology, and endodontics.