Sequence Assembly of Yarrowia lipolytica Strain W29/CLIB89 Shows Transposable Element Diversity
暂无分享,去创建一个
Michael D. Zeller | P. Baldi | S. Sandmeyer | James Yu | M. Oakes | C. Magnan | Ivan Chang | E. Jahn | Yuzo Kanomata | Jenny Wu
[1] Daniel S. Standage,et al. xGDBvm: A Web GUI-Driven Workflow for Annotating Eukaryotic Genomes in the Cloud[OPEN] , 2016, Plant Cell.
[2] J. Nielsen,et al. Regulation of amino-acid metabolism controls flux to lipid accumulation in Yarrowia lipolytica , 2016, npj Systems Biology and Applications.
[3] Lena Osterhagen,et al. Nonconventional Yeasts In Biotechnology A Handbook , 2016 .
[4] Q. Zhu,et al. Metabolic engineering of Yarrowia lipolytica for industrial applications. , 2015, Current opinion in biotechnology.
[5] S. Baker,et al. Draft Genome Sequence of the Dimorphic Yeast Yarrowia lipolytica Strain W29 , 2015, Genome Announcements.
[6] Sue A. Karagiosis,et al. Comprehensive Metabolomic, Lipidomic and Microscopic Profiling of Yarrowia lipolytica during Lipid Accumulation Identifies Targets for Increased Lipogenesis , 2015, PloS one.
[7] S. Sandmeyer,et al. The Ty1 LTR-Retrotransposon of Budding Yeast, Saccharomyces cerevisiae , 2015, Microbiology spectrum.
[8] María Martín,et al. UniProt: A hub for protein information , 2015 .
[9] The Uniprot Consortium,et al. UniProt: a hub for protein information , 2014, Nucleic Acids Res..
[10] J. V. Moran,et al. The Influence of LINE-1 and SINE Retrotransposons on Mammalian Genomes , 2015, Microbiology spectrum.
[11] N. Craig. A Moveable Feast: An Introduction to Mobile DNA , 2015 .
[12] S. Sandmeyer,et al. Ty3, a Position-specific Retrotransposon in Budding Yeast. , 2015, Microbiology spectrum.
[13] Hal S. Alper,et al. Metabolic engineering of strains: from industrial-scale to lab-scale chemical production , 2015, Journal of Industrial Microbiology & Biotechnology.
[14] Hal S. Alper,et al. Draft Genome Sequence of the Oleaginous Yeast Yarrowia lipolytica PO1f, a Commonly Used Metabolic Engineering Host , 2014, Genome Announcements.
[15] Hal S Alper,et al. Harnessing Yarrowia lipolytica lipogenesis to create a platform for lipid and biofuel production , 2014, Nature Communications.
[16] Gregory Butler,et al. SnowyOwl: accurate prediction of fungal genes by using RNA-Seq and homology information to select among ab initio models , 2014, BMC Bioinformatics.
[17] Tsair-Yuan Chang,et al. Viral IRES Prediction System - a Web Server for Prediction of the IRES Secondary Structure In Silico , 2013, PloS one.
[18] G. Barth,et al. Increased homologous integration frequency in Yarrowia lipolytica strains defective in non-homologous end-joining , 2013, Current Genetics.
[19] Nikita S. Vassetzky,et al. SINEBase: a database and tool for SINE analysis , 2012, Nucleic Acids Res..
[20] C. Gaillardin,et al. Comparative Genomics of Yarrowia lipolytica , 2013 .
[21] G. Stephanopoulos,et al. Engineering the push and pull of lipid biosynthesis in oleaginous yeast Yarrowia lipolytica for biofuel production. , 2013, Metabolic engineering.
[22] F. Bordes,et al. Metabolic engineering for ricinoleic acid production in the oleaginous yeast Yarrowia lipolytica , 2013, Applied Microbiology and Biotechnology.
[23] A. Steinbüchel,et al. Yarrowia lipolytica , 2013, Microbiology Monographs.
[24] J. Nicaud. Yarrowia lipolytica , 2012, Yeast.
[25] Kenneth H. Wolfe,et al. A pipeline for automated annotation of yeast genome sequences by a conserved-synteny approach , 2012, BMC Bioinformatics.
[26] C. Neuvéglise,et al. Mitochondrial genomes of yeasts of the Yarrowia clade. , 2012, FEMS yeast research.
[27] D. Walsh,et al. Viral subversion of the host protein synthesis machinery , 2011, Nature Reviews Microbiology.
[28] D A Kramerov,et al. Origin and evolution of SINEs in eukaryotic genomes , 2011, Heredity.
[29] J. Nicaud,et al. An overview of lipid metabolism in yeasts and its impact on biotechnological processes , 2011, Applied Microbiology and Biotechnology.
[30] Lior Pachter,et al. Sequence Analysis , 2020, Definitions.
[31] M. Borodovsky,et al. Gene prediction in novel fungal genomes using an ab initio algorithm with unsupervised training. , 2008, Genome research.
[32] M. Belfort,et al. The take and give between retrotransposable elements and their hosts. , 2008, Annual review of genetics.
[33] J. Acker,et al. Dicistronic tRNA–5S rRNA genes in Yarrowia lipolytica: an alternative TFIIIA-independent way for expression of 5S rRNA genes , 2008, Nucleic acids research.
[34] E. Birney,et al. Velvet: algorithms for de novo short read assembly using de Bruijn graphs. , 2008, Genome research.
[35] Rodrigo Lopez,et al. Clustal W and Clustal X version 2.0 , 2007, Bioinform..
[36] Sian R. Nieduszynska,et al. Control of gag-pol gene expression in the Candida albicans retrotransposon Tca2 , 2007, BMC Molecular Biology.
[37] B. Dujon,et al. The RNA polymerase III-dependent family of genes in hemiascomycetes: comparative RNomics, decoding strategies, transcription and evolutionary implications , 2006, Nucleic acids research.
[38] M. Borodovsky,et al. Gene identification in novel eukaryotic genomes by self-training algorithm , 2005, Nucleic acids research.
[39] Kevin P. Byrne,et al. The Yeast Gene Order Browser: combining curated homology and syntenic context reveals gene fate in polyploid species. , 2005, Genome research.
[40] G. Barth,et al. Tyl6, a novel Ty3/gypsy‐like retrotransposon in the genome of the dimorphic fungus Yarrowia lipolytica , 2005, Yeast.
[41] Burkhard Morgenstern,et al. AUGUSTUS: a web server for gene prediction in eukaryotes that allows user-defined constraints , 2005, Nucleic Acids Res..
[42] David James Sherman,et al. A systematic nomenclature of chromosomal elements for hemiascomycete yeasts , 2005, Yeast.
[43] Patrick Wincker,et al. Mutator-Like Element in the Yeast Yarrowia lipolytica Displays Multiple Alternative Splicings , 2005, Eukaryotic Cell.
[44] Ewan Birney,et al. Automated generation of heuristics for biological sequence comparison , 2005, BMC Bioinformatics.
[45] B. Dujon,et al. Genome evolution in yeasts , 2004, Nature.
[46] M. Daboussi,et al. Fot1, a new family of fungal transposable elements , 1992, Molecular and General Genetics MGG.
[47] Jean-Marc Nicaud,et al. Expression of invertase activity in Yarrowia lipolytica and its use as a selective marker , 1989, Current Genetics.
[48] S. Oliver,et al. Cloning and characterisation of the ribosomal RNA genes of the dimorphic yeast, Yarrowia lipolytica , 2004, Current Genetics.
[49] S. Salzberg,et al. Versatile and open software for comparing large genomes , 2004, Genome Biology.
[50] P. Capy,et al. Transposable elements in filamentous fungi. , 2003, Annual review of microbiology.
[51] Thierry Heidmann,et al. LINE-mediated retrotransposition of marked Alu sequences , 2003, Nature Genetics.
[52] F. Kaper,et al. Hop, an active Mutator-like element in the genome of the fungus Fusarium oxysporum. , 2003, Molecular biology and evolution.
[53] P. Niederberger,et al. Protein expression and secretion in the yeast Yarrowia lipolytica. , 2002, FEMS yeast research.
[54] H. Feldmann,et al. Genomic evolution of the long terminal repeat retrotransposons in hemiascomycetous yeasts. , 2002, Genome research.
[55] C. Gaillardin,et al. Ylli, a non-LTR retrotransposon L1 family in the dimorphic yeast Yarrowia lipolytica. , 2002, Molecular biology and evolution.
[56] Alan M. Lambowitz,et al. Mobile DNA III , 2002 .
[57] D. Lisch. Mutator transposons. , 2002, Trends in plant science.
[58] N. Holton,et al. An active retrotransposon in Candida albicans. , 2001, Nucleic acids research.
[59] R. Poulter,et al. L1-like non-LTR retrotransposons in the yeast Candida albicans , 2001, Current Genetics.
[60] Ulrich Brandt,et al. The Complete Mitochondrial Genome of Yarrowia Lipolytica , 2001, Comparative and functional genomics.
[61] B. Dujon,et al. Genomic Exploration of the Hemiascomycetous Yeasts: 1. A set of yeast species for molecular evolution studies 1 , 2000, FEBS letters.
[62] P. Wincker,et al. Genomic Exploration of the Hemiascomycetous Yeasts: 17. Yarrowia lipolytica , 2000, FEBS letters.
[63] T. Eickbush,et al. Modular Evolution of the Integrase Domain in the Ty3/Gypsy Class of LTR Retrotransposons , 1999, Journal of Virology.
[64] C. Burge. Chapter 8 – Modeling dependencies in pre-mRNA splicing signals , 1998 .
[65] D. Ficheux,et al. The yeast Ty3 retrotransposon contains a 5′–3′ bipartite primer‐binding site and encodes nucleocapsid protein NCp9 functionally homologous to HIV‐1 NCp7 , 1998, The EMBO journal.
[66] Simon Kasif,et al. Computational methods in molecular biology , 1998 .
[67] Genomic organization of the yeast Yarrowia lipolytica , 1997, Chromosoma.
[68] S. Eddy,et al. tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence. , 1997, Nucleic acids research.
[69] M. Linial,et al. Human Foamy Virus Replication: A Pathway Distinct from That of Retroviruses and Hepadnaviruses , 1996, Science.
[70] Klaus Wolf,et al. Nonconventional Yeasts in Biotechnology , 1996 .
[71] G. Barth,et al. Ylt1, a highly repetitive retrotransposon in the genome of the dimorphic fungus Yarrowia lipolytica , 1994, Journal of bacteriology.
[72] F. Sherman. Getting started with yeast. , 1991, Methods in enzymology.
[73] E. Myers,et al. Basic local alignment search tool. , 1990, Journal of molecular biology.
[74] C. Kurischko,et al. Sexual behaviour in the alkane-utilizing yeast Yarrowia lipolytica. , 1989, Yeast.
[75] D. Chalker,et al. Ty3, a yeast retrotransposon associated with tRNA genes, has homology to animal retroviruses , 1988, Molecular and cellular biology.
[76] C. Gaillardin,et al. Heterogeneity in the ribosomal RNA genes of the yeast Yarrowia lipolytica; cloning and analysis of two size classes of repeats. , 1985, Gene.
[77] D. Robertson. Characterization of a mutator system in maize , 1978 .
[78] F. T. Trouton,et al. Systematic Nomenclature , 1893, Nature.