Functional Group Adsorption on Calcite: I. Oxygen Containing and Nonpolar Organic Molecules

Considerable interest in calcite crystallization has prompted many studies on organic molecule adsorption. However, each study has explored only a few compounds, using different methods and conditions, so it is difficult to combine the results into a general model that describes the fundamental mechanisms. Our goal was to develop a comprehensive adsorption model from the behavior of a range of organic compounds by exploring how common functional groups interact with calcite and the effects of various side groups and hydrogen on adsorption. We used density functional theory, with semiempirical dispersion corrections (DFT-D2), to determine adsorption energy on calcite {10.4} for nonpolar (benzene, ethane, and carbon dioxide) and oxygen containing polar molecules (water, methanol, ethanol, phenol, formic acid, acetic acid, propanoic acid, benzoic acid, formaldehyde, acetaldehyde, propionaldehyde, benzaldehyde, dimethyl ether, acetone, and furan). From the adsorption energies, within the transition state theo...

[1]  H. Monkhorst,et al.  SPECIAL POINTS FOR BRILLOUIN-ZONE INTEGRATIONS , 1976 .

[2]  S. C. Parker,et al.  Atomistic Simulation of the Dissociative Adsorption of Water on Calcite Surfaces , 2003 .

[3]  E. DiMasi,et al.  Three-dimensional structure of the calcite-water interface by surface X-ray scattering , 2004 .

[4]  S. C. Parker,et al.  Modeling the Competitive Adsorption of Water and Methanoic Acid on Calcite and Fluorite Surfaces , 1998 .

[5]  N. Sommerdijk,et al.  Biomimetic CaCO3 mineralization using designer molecules and interfaces. , 2008, Chemical reviews.

[6]  H. Gaub,et al.  Quantitative single molecule measurements on the interaction forces of poly(L-glutamic acid) with calcite crystals. , 2007, Journal of the American Chemical Society.

[7]  Caetano R. Miranda,et al.  Hydrocarbon adsorption on carbonate mineral surfaces: A first-principles study with van der Waals interactions , 2012 .

[8]  C. Margulis,et al.  Dynamics of Water Adsorption onto a Calcite Surface as a Function of Relative Humidity , 2008 .

[9]  K. Sand,et al.  Binding of ethanol on calcite: the role of the OH bond and its relevance to biomineralization. , 2010, Langmuir : the ACS journal of surfaces and colloids.

[10]  David Quigley,et al.  Simulations of Ovocleidin-17 Binding to Calcite Surfaces and Its Implications for Eggshell Formation , 2011 .

[11]  A. Szabó,et al.  Thermal, Electron, and Photon Induced Chemistry of Acetone on Ag(111) , 1997 .

[12]  S. C. Parker,et al.  Growth modification of seeded calcite using carboxylic acids: atomistic simulations. , 2010, Journal of colloid and interface science.

[13]  N. Bovet,et al.  The surface reactivity of chalk (biogenic calcite) with hydrophilic and hydrophobic functional groups , 2014 .

[14]  A. Wierzbicki,et al.  Formation of chiral morphologies through selective binding of amino acids to calcite surface steps , 2001, Nature.

[15]  Thomas D. Perry,et al.  Molecular models of alginic acid: Interactions with calcium ions and calcite surfaces , 2006 .

[16]  P. Redhead Thermal desorption of gases , 1962 .

[17]  T. G. Cooper,et al.  A computer modeling study of the inhibiting effect of organic adsorbates on calcite crystal growth , 2004 .

[18]  Vincenzo Barone,et al.  Role and effective treatment of dispersive forces in materials: Polyethylene and graphite crystals as test cases , 2009, J. Comput. Chem..

[19]  Colin L. Freeman,et al.  New Forcefields for Modeling Biomineralization Processes , 2007 .

[20]  M. Borkovec,et al.  Adsorption and surface-induced precipitation of poly(acrylic acid) on calcite revealed with atomic force microscopy , 2011 .

[21]  Evren Ataman,et al.  Functional Group Adsorption on Calcite: II. Nitrogen and Sulfur Containing Organic Molecules , 2016 .

[22]  J. Harding,et al.  Simulation of organic monolayers as templates for the nucleation of calcite crystals. , 2004, Langmuir : the ACS journal of surfaces and colloids.

[23]  T. Filley,et al.  Selective adsorption of l- and d-amino acids on calcite: Implications for biochemical homochirality , 2001, Proceedings of the National Academy of Sciences of the United States of America.

[24]  N. Bovet,et al.  Interaction of alcohols with the calcite surface. , 2015, Physical chemistry chemical physics : PCCP.

[25]  B. Slater,et al.  Structure of the (101̄4) surfaces of calcite, dolomite and magnesite under wet and dry conditions , 2000 .

[26]  M. Barteau,et al.  The influence of temperature and surface composition upon the coordination of acetone to the Pd(111) surface , 1989 .

[27]  J. Metson Charge compensation and binding energy referencing in XPS analysis , 1999 .

[28]  H. Bluhm,et al.  Adsorption of acetic acid on ice studied by ambient-pressure XPS and partial-electron-yield NEXAFS spectroscopy at 230-240 K. , 2013, The journal of physical chemistry. A.

[29]  Colin L. Freeman,et al.  Interactions of Organic Molecules with Calcite and Magnesite Surfaces , 2009 .

[30]  S. Stipp Toward a conceptual model of the calcite surface: hydration, hydrolysis, and surface potential , 1999 .

[31]  R. Hazen,et al.  Correlation of pH-dependent surface interaction forces to amino acid adsorption: Implications for the origin of life , 2004 .

[32]  S. K. Medeiros,et al.  Electronic and optical properties of CaCO3 calcite, and excitons in Si@CaCO3 and CaCO3@SiO2 core-shell quantum dots , 2007 .

[33]  Dorothy M. Duffy,et al.  Investigation of the interaction of water with the calcite {1014} surface using ab-initio simulation , 2009 .

[34]  G. Kresse,et al.  From ultrasoft pseudopotentials to the projector augmented-wave method , 1999 .

[35]  C. Eggleston,et al.  Calcite surface structure observed at microtopographic and molecular scales with atomic force microscopy (AFM) , 1994 .

[36]  C. Usher,et al.  Spatially resolved product formation in the reaction of formic acid with calcium carbonate (1014): the role of step density and adsorbed water-assisted ion mobility. , 2007, Langmuir : the ACS journal of surfaces and colloids.

[37]  J. Bohr,et al.  Thickness and structure of the water film deposited from vapour on calcite surfaces , 2010 .

[38]  M. Andersson,et al.  Energies of the adsorption of functional groups to calcium carbonate polymorphs: the importance of -OH and -COOH groups. , 2013, Langmuir : the ACS journal of surfaces and colloids.

[39]  P. Fenter,et al.  Structure and growth of stearate monolayers on calcite; first results of an in situ X-ray reflectivity study , 1999 .

[40]  Thomas D. Perry,et al.  Molecular models of a hydrated calcite mineral surface , 2007 .

[41]  Alfonso Mucci,et al.  Theoretical insights into the hydrated (10.4) calcite surface: structure, energetics, and bonding relationships. , 2009, Langmuir : the ACS journal of surfaces and colloids.

[42]  H. Teng,et al.  Direction specific interactions of 1,4-dicarboxylic acid with calcite surfaces. , 2006, Journal of the American Chemical Society.

[43]  M. Nielsen,et al.  Molecular ordering of ethanol at the calcite surface. , 2012, Langmuir : the ACS journal of surfaces and colloids.

[44]  Perry O. Roehl,et al.  Carbonate petroleum reservoirs , 1985 .

[45]  Uta Magdans,et al.  Crystalline order of a water/glycine film coadsorbed on the (104) calcite surface. , 2007, Langmuir : the ACS journal of surfaces and colloids.

[46]  J. Harding,et al.  Molecular dynamics simulations of peptides on calcite surface , 2009 .

[47]  A. Michaelides,et al.  Acetone adsorption on ice investigated by X-ray spectroscopy and density functional theory. , 2011, Physical chemistry chemical physics : PCCP.

[48]  Blöchl,et al.  Generalized separable potentials for electronic-structure calculations. , 1990, Physical review. B, Condensed matter.

[49]  S. Stipp,et al.  Biological Control on Calcite Crystallization by Polysaccharides , 2008 .

[50]  S. Senanayake,et al.  Adsorption and Reaction of Acetone over CeOx(111) Thin Films , 2009 .

[51]  A. Kühnle,et al.  Substrate templating upon self-assembly of hydrogen-bonded molecular networks on an insulating surface. , 2012, Small.

[52]  J. Lu,et al.  Molecular Modulation of Calcite Dissolution by Organic Acids , 2011 .

[53]  H. Kagi,et al.  Effects of L-Aspartic acid on the step retreat kinetics of calcite , 2012 .

[54]  Yingkai Zhang,et al.  Comment on “Generalized Gradient Approximation Made Simple” , 1998 .

[55]  M. Hochella,et al.  Structure and bonding environments at the calcite surface as observed with X-ray photoelectron spectroscopy (XPS) and low energy electron diffraction (LEED) , 1991 .

[56]  Stefan Grimme,et al.  Semiempirical GGA‐type density functional constructed with a long‐range dispersion correction , 2006, J. Comput. Chem..

[57]  M. Andersson,et al.  Sensitivity Analysis of Cluster Models for Calculating Adsorption Energies for Organic Molecules on Mineral Surfaces , 2011 .

[58]  Adsorption Isotherms of Water Vapor on Calcite: a Molecular Dynamics-Monte Carlo Hybrid Simulation Using a Polarizable Water Model , 1999 .

[59]  R. M. Lambert,et al.  The Surface Chemistry of Acetic Acid on Pd{111} , 2001 .

[60]  B. Drake,et al.  Atomic force microscopy and molecular modeling of protein and peptide binding to calcite , 1994, Calcified Tissue International.

[61]  K. Sand,et al.  Interaction of ethanol and water with the {1014} surface of calcite. , 2010, Langmuir : the ACS journal of surfaces and colloids.

[62]  H. Onishi,et al.  Water and 2-propanol structured on calcite (104) probed by frequency-modulation atomic force microscopy. , 2013, Langmuir : the ACS journal of surfaces and colloids.

[63]  W. Reckien,et al.  System-dependent dispersion coefficients for the DFT-D3 treatment of adsorption processes on ionic surfaces. , 2011, Chemphyschem : a European journal of chemical physics and physical chemistry.

[64]  Caetano R. Miranda,et al.  Modeling Acid Oil Component Interactions with Carbonate Reservoirs: A First-Principles View on Low Salinity Recovery Mechanisms , 2014 .

[65]  Geffroy,et al.  Surface Complexation of Calcite by Carboxylates in Water. , 1999, Journal of colloid and interface science.

[66]  Qi Liu,et al.  The adsorption and configuration of octyl hydroxamic acid on pyrochlore and calcite , 2012 .