The plasma membrane-associated cation-binding protein PCaP1 of Arabidopsis thaliana is a uranyl-binding protein.

Uranium (U) is a naturally-occurring radionuclide that is toxic to living organisms. Given that proteins are primary targets of U(VI), their identification is an essential step towards understanding the mechanisms of radionuclide toxicity, and possibly detoxification. Here, we implemented a chromatographic strategy including immobilized metal affinity chromatography to trap protein targets of uranyl in Arabidopsis thaliana. This procedure allowed the identification of 38 uranyl-binding proteins (UraBPs) from root and shoot extracts. Among them, UraBP25, previously identified as plasma membrane-associated cation-binding protein 1 (PCaP1), was further characterized as a protein interacting in vitro with U(VI) and other metals using spectroscopic and structural approaches, and in planta through analyses of the fate of U(VI) in Arabidopsis lines with altered PCaP1 gene expression. Our results showed that recombinant PCaP1 binds U(VI) in vitro with affinity in the nM range, as well as Cu(II) and Fe(III) in high proportions, and that Ca(II) competes with U(VI) for binding. U(VI) induces PCaP1 oligomerization through binding at the monomer interface, at both the N-terminal structured domain and the C-terminal flexible region. Finally, U(VI) translocation in Arabidopsis shoots was affected in pcap1 null-mutant, suggesting a role for this protein in ion trafficking in planta.

[1]  S. Ravanel,et al.  Calcium-permeable cation channels are involved in uranium uptake in Arabidopsis thaliana. , 2021, Journal of hazardous materials.

[2]  B. Alpha-Bazin,et al.  Discovery and characterization of UipA, a uranium- and iron-binding PepSY protein involved in uranium tolerance by soil bacteria , 2021, The ISME Journal.

[3]  C. T. Anderson,et al.  Fifteen compelling open questions in plant cell biology , 2021, The Plant cell.

[4]  Oriol Vinyals,et al.  Highly accurate protein structure prediction with AlphaFold , 2021, Nature.

[5]  M. Maeshima,et al.  The plasma membrane–associated Ca2+ ‐binding protein, PCaP1, is required for oligogalacturonide and flagellin‐induced priming and immunity , 2021, Plant, cell & environment.

[6]  S. Ravanel,et al.  Development of a metalloproteomic approach to analyse the response of Arabidopsis cells to uranium stress. , 2020, Metallomics : integrated biometal science.

[7]  Ying-Wu Lin Uranyl Binding to Proteins and Structural-Functional Impacts , 2020, Biomolecules.

[8]  Mathias Wilhelm,et al.  Mass-spectrometry-based draft of the Arabidopsis proteome , 2020, Nature.

[9]  Xinhui Liu,et al.  Advances on the toxicity of uranium to different organisms. , 2019, Chemosphere.

[10]  Jisen Zhang,et al.  Remorin interacting with PCaP1 impairs Turnip Mosaic Virus intercellular movement but is antagonized by VPg. , 2019, The New phytologist.

[11]  P. Delangle,et al.  Recent advances in uranyl binding in proteins thanks to biomimetic peptides. , 2019, Journal of inorganic biochemistry.

[12]  Xuegang Luo,et al.  A metabolomic, transcriptomic profiling, and mineral nutrient metabolism study of the phytotoxicity mechanism of uranium. , 2019, Journal of hazardous materials.

[13]  K. Koebke,et al.  Probing Metal Ion Discrimination in a Protein Designed to Bind Uranyl Cation With Femtomolar Affinity , 2019, Front. Mol. Biosci..

[14]  G. Creff,et al.  What do we know about actinides-proteins interactions? , 2019, Radiochimica Acta.

[15]  C. Vidaud,et al.  Phosphate-Rich Biomimetic Peptides Shed Light on High-Affinity Hyperphosphorylated Uranyl Binding Sites in Phosphoproteins. , 2019, Chemistry.

[16]  R. Ortega,et al.  Deciphering the uranium target proteins in human dopaminergic SH-SY5Y cells , 2019, Archives of Toxicology.

[17]  Hideyuki Takahashi,et al.  Plasma Membrane-Associated Ca2+-Binding Protein PCaP1 is Involved in Root Hydrotropism of Arabidopsis thaliana. , 2019, Plant & cell physiology.

[18]  B. Brutscher,et al.  NMRlib: user-friendly pulse sequence tools for Bruker NMR spectrometers , 2019, Journal of biomolecular NMR.

[19]  S. Ravanel,et al.  Uncovering the physiological and cellular effects of uranium on the root system of Arabidopsis thaliana , 2019, Environmental and Experimental Botany.

[20]  Martin Eisenacher,et al.  The PRIDE database and related tools and resources in 2019: improving support for quantification data , 2018, Nucleic Acids Res..

[21]  M. Merroun,et al.  Structural Analysis of Uranyl Complexation by the EF-Hand Motif of Calmodulin: Effect of Phosphorylation. , 2017, Chemistry.

[22]  S. Frelon,et al.  In vivo identification of potential uranium protein targets in zebrafish ovaries after chronic waterborne exposure. , 2017, Metallomics : integrated biometal science.

[23]  G. Creff,et al.  Cyclic Phosphopeptides to Rationalize the Role of Phosphoamino Acids in Uranyl Binding to Biological Targets. , 2017, Chemistry.

[24]  C. Vidaud,et al.  Investigation of uranium interactions with calcium phosphate-binding proteins using ICP/MS and CE-ICP/MS. , 2016, Metallomics : integrated biometal science.

[25]  G. De Lorenzo,et al.  Comprehensive Analysis of the Membrane Phosphoproteome Regulated by Oligogalacturonides in Arabidopsis thaliana , 2016, Front. Plant Sci..

[26]  M. Maeshima,et al.  A novel-type phosphatidylinositol phosphate-interactive, Ca-binding protein PCaP1 in Arabidopsisthaliana: stable association with plasma membrane and partial involvement in stomata closure , 2016, Journal of Plant Research.

[27]  M. Floriani,et al.  Insights into the nature of uranium target proteins within zebrafish gills after chronic and acute waterborne exposures , 2016, Environmental toxicology and chemistry.

[28]  C. Acharya,et al.  Unexpected Interactions of the Cyanobacterial Metallothionein SmtA with Uranium. , 2016, Inorganic chemistry.

[29]  H. Vandenhove,et al.  Uranium exposure induces nitric oxide and hydrogen peroxide generation in Arabidopsis thaliana , 2015 .

[30]  H. Vandenhove,et al.  Oxidative stress responses induced by uranium exposure at low pH in leaves of Arabidopsis thaliana plants. , 2015, Journal of environmental radioactivity.

[31]  C. Lebrun,et al.  Preorganized Peptide Scaffolds as Mimics of Phosphorylated Proteins Binding Sites with a High Affinity for Uranyl. , 2015, Inorganic chemistry.

[32]  C. Vidaud,et al.  Assessment of CE‐ICP/MS hyphenation for the study of uranyl/protein interactions , 2015, Electrophoresis.

[33]  Ludwig A. Hothorn,et al.  nparcomp: An R Software Package for Nonparametric Multiple Comparisons and Simultaneous Confidence Intervals , 2015 .

[34]  C. Lebrun,et al.  Engineering short peptide sequences for uranyl binding. , 2014, Chemistry.

[35]  H. Vandenhove,et al.  The pH strongly influences the uranium-induced effects on the photosynthetic apparatus of Arabidopsis thaliana plants. , 2014, Plant physiology and biochemistry : PPB.

[36]  G. Friso,et al.  Meta-Analysis of Arabidopsis thaliana Phospho-Proteomics Data Reveals Compartmentalization of Phosphorylation Motifs[C][W] , 2014, Plant Cell.

[37]  S. Frelon,et al.  Development of non-denaturing off-gel isoelectric focusing for the separation of uranium–protein complexes in fish , 2014, Analytical and Bioanalytical Chemistry.

[38]  N. Leonhardt,et al.  Uranium perturbs signaling and iron uptake response in Arabidopsis thaliana roots. , 2014, Metallomics : integrated biometal science.

[39]  H. Hirt,et al.  Identification of novel PAMP-triggered phosphorylation and dephosphorylation events in Arabidopsis thaliana by quantitative phosphoproteomic analysis. , 2014, Journal of proteome research.

[40]  Luhua Lai,et al.  A protein engineered to bind uranyl selectively and with femtomolar affinity. , 2014, Nature chemistry.

[41]  S. Frelon,et al.  Non-denaturating isoelectric focusing gel electrophoresis for uranium–protein complexes quantitative analysis with LA-ICP MS , 2014, Analytical and Bioanalytical Chemistry.

[42]  Ying-Wu Lin,et al.  A spectroscopic study of uranyl-cytochrome b5/cytochrome c interactions. , 2014, Spectrochimica acta. Part A, Molecular and biomolecular spectroscopy.

[43]  S. Munné-Bosch,et al.  Glutathione and transpiration as key factors conditioning oxidative stress in Arabidopsis thaliana exposed to uranium , 2014, Planta.

[44]  Tao Qin,et al.  Arabidopsis Microtubule-Destabilizing Protein 25 Functions in Pollen Tube Growth by Severing Actin Filaments[W] , 2014, Plant Cell.

[45]  W. Bal,et al.  Binding of transition metal ions to albumin: sites, affinities and rates. , 2013, Biochimica et biophysica acta.

[46]  G. Creff,et al.  Osteopontin: a uranium phosphorylated binding-site characterization. , 2013, Chemistry.

[47]  C. Vidaud,et al.  Revision of the biodistribution of uranyl in serum: is fetuin-A the major protein target? , 2013, Chemical research in toxicology.

[48]  E. Schnug,et al.  Fertilizer-derived uranium and its threat to human health. , 2013, Environmental science & technology.

[49]  R. Konrat,et al.  BEST-TROSY experiments for time-efficient sequential resonance assignment of large disordered proteins , 2013, Journal of biomolecular NMR.

[50]  C. Berthomieu,et al.  Modulating Uranium Binding Affinity in Engineered Calmodulin EF-Hand Peptides: Effect of Phosphorylation , 2012, PloS one.

[51]  W. Miller,et al.  Interaction of the Trans-Frame Potyvirus Protein P3N-PIPO with Host Protein PCaP1 Facilitates Potyvirus Movement , 2012, PLoS pathogens.

[52]  J. Bourguignon,et al.  Influence of uranium speciation on its accumulation and translocation in three plant species: Oilseed rape, sunflower and wheat , 2012 .

[53]  Ying-Wu Lin,et al.  Interactions of uranyl ion with cytochrome b5 and its His39Ser variant as revealed by molecular simulation in combination with experimental methods , 2012, Journal of Molecular Modeling.

[54]  Ziding Zhang,et al.  MDP25, A Novel Calcium Regulatory Protein, Mediates Hypocotyl Cell Elongation by Destabilizing Cortical Microtubules in Arabidopsis[C][W][OA] , 2011, Plant Cell.

[55]  Li‐fu Liao,et al.  Insights into Uranyl Ion Binding to Ubiquitin from Molecular Modeling and Dynamics Simulations , 2011 .

[56]  H. Vandenhove,et al.  URANIUM INDUCED EFFECTS ON DEVELOPMENT AND MINERAL NUTRITION OF ARABIDOPSIS THALIANA , 2011 .

[57]  Erik Wolcott,et al.  The Frequencies of Amino Acids Encoded by Genomes that Utilize Standard and Nonstandard Genetic Codes , 2010 .

[58]  Aleksandar Cvetkovic,et al.  Microbial metalloproteomes are largely uncharacterized , 2010, Nature.

[59]  M. Maeshima,et al.  PCaPs, possible regulators of PtdInsP signals on plasma membrane , 2010, Plant signaling & behavior.

[60]  C. Garnier,et al.  Determinations of Uranium(VI) Binding Properties with some Metalloproteins (Transferrin, Albumin, Metallothionein and Ferritin) by Fluorescence Quenching , 2010, Journal of Fluorescence.

[61]  Julie Misson,et al.  Use of phosphate to avoid uranium toxicity in Arabidopsis thaliana leads to alterations of morphological and physiological responses regulated by phosphate availability , 2009 .

[62]  C. Vidaud,et al.  Identification of uranyl binding proteins from human kidney-2 cell extracts by immobilized uranyl affinity chromatography and mass spectrometry. , 2009, Journal of chromatography. A.

[63]  O. Guipaud,et al.  In vivo screening of proteins likely to bind uranium in exposed rat kidney , 2009 .

[64]  W. Gruissem,et al.  Large-Scale Arabidopsis Phosphoproteome Profiling Reveals Novel Chloroplast Kinase Substrates and Phosphorylation Networks1[W] , 2009, Plant Physiology.

[65]  Chuan He,et al.  Engineering a uranyl-specific binding protein from NikR. , 2009, Angewandte Chemie.

[66]  M. Anke,et al.  Uranium transfer in the food chain from soil to plants, animals and man , 2009 .

[67]  H. Vandenhove,et al.  Effects of uranium and phosphate concentrations on oxidative stress related responses induced in Arabidopsis thaliana. , 2008, Plant physiology and biochemistry : PPB.

[68]  M. Maeshima,et al.  A plasma membrane-associated protein of Arabidopsis thaliana AtPCaP1 binds copper ions and changes its higher order structure. , 2008, Journal of biochemistry.

[69]  M. Maeshima,et al.  A hydrophilic cation‐binding protein of Arabidopsis thaliana, AtPCaP1, is localized to plasma membrane via N‐myristoylation and interacts with calmodulin and the phosphatidylinositol phosphates PtdIns(3,4,5)P3 and PtdIns(3,5)P2 , 2008, The FEBS journal.

[70]  C. Vidaud,et al.  Specific capture of uranyl protein targets by metal affinity chromatography. , 2008, Journal of chromatography. A.

[71]  M. Maeshima,et al.  Molecular properties of a novel, hydrophilic cation-binding protein associated with the plasma membrane. , 2007, Journal of experimental botany.

[72]  C. Vidaud,et al.  Structural consequences of binding of UO2(2+) to apotransferrin: can this protein account for entry of uranium into human cells? , 2007, Biochemistry.

[73]  P. Schanda,et al.  HET‐SOFAST NMR for fast detection of structural compactness and heterogeneity along polypeptide chains , 2006, Magnetic resonance in chemistry : MRC.

[74]  Huan Huang,et al.  Uranium(VI) bio-coordination chemistry from biochemical, solution and protein structural data , 2006 .

[75]  C. Vita,et al.  Selective binding of uranyl cation by a novel calmodulin peptide , 2006 .

[76]  C. Vidaud,et al.  Screening of human serum proteins for uranium binding. , 2005, Chemical research in toxicology.

[77]  F. Parcy,et al.  Analysis of an activated ABI5 allele using a new selection method for transgenic Arabidopsis seeds , 2004, FEBS letters.

[78]  F. Woodward,et al.  The role of stomata in sensing and driving environmental change , 2003, Nature.

[79]  J. Renshaw,et al.  Synthesis and characterization of uranyl compounds with iminodiacetate and oxydiacetate displaying variable denticity. , 2002, Inorganic chemistry.

[80]  Hildegarde Vandenhove,et al.  European sites contaminated by residues from the ore-extracting and -processing industries , 2002 .

[81]  Charles S. Johnson Diffusion Ordered Nuclear Magnetic Resonance Spectroscopy: Principles and Applications , 1999 .

[82]  S. Clough,et al.  Floral dip: a simplified method for Agrobacterium-mediated transformation of Arabidopsis thaliana. , 1998, The Plant journal : for cell and molecular biology.

[83]  L. Kochian,et al.  Role of uranium speciation in the uptake and translocation of uranium by plants , 1998 .

[84]  T. Pawson,et al.  Backbone dynamics of a free and phosphopeptide-complexed Src homology 2 domain studied by 15N NMR relaxation. , 1994, Biochemistry.

[85]  H. Gampp,et al.  Calculation of equilibrium constants from multiwavelength spectroscopic data--II: SPECFIT: two user-friendly programs in basic and standard FORTRAN 77. , 1985, Talanta.

[86]  M. M. Bradford A rapid and sensitive method for the quantitation of microgram quantities of protein utilizing the principle of protein-dye binding. , 1976, Analytical biochemistry.

[87]  Ralph G. Pearson,et al.  HARD AND SOFT ACIDS AND BASES , 1963 .

[88]  M. Kuntz,et al.  Arabidopsis thaliana plants challenged with uranium reveal new insights into iron and phosphate homeostasis. , 2018, The New phytologist.

[89]  C. Vidaud,et al.  Characterization of UO2(2+) binding to osteopontin, a highly phosphorylated protein: insights into potential mechanisms of uranyl accumulation in bones. , 2014, Metallomics : integrated biometal science.

[90]  J. Armengaud,et al.  Taking the shortcut for high-throughput shotgun proteomic analysis of bacteria. , 2014, Methods in molecular biology.

[91]  H. Vandenhove,et al.  Uranium affects photosynthetic parameters in Arabidopsis thaliana , 2014 .

[92]  B. Brutscher,et al.  Recovering lost magnetization: polarization enhancement in biomolecular NMR , 2011, Journal of biomolecular NMR.