Cytosine Deamination Is a Major Cause of Baseline Noise in Next-Generation Sequencing
暂无分享,去创建一个
James R. Eshleman | Ming-Tseh Lin | J. Eshleman | Ming-Tseh Lin | C. Gocke | Guoli Chen | Stacy L. Mosier | Guoli Chen | Stacy Mosier | Christopher D. Gocke
[1] Alexander Dobrovic,et al. Dramatic reduction of sequence artefacts from DNA isolated from formalin-fixed cancer biopsies by treatment with uracil-DNA glycosylase , 2012, Oncotarget.
[2] Keith C. Norris,et al. DNA cytosine methylation and heat-induced deamination , 1986, Bioscience reports.
[3] W. Franklin,et al. Uracil-DNA Glycosylase in the Extreme Thermophile Archaeoglobus fulgidus * , 2000, The Journal of Biological Chemistry.
[4] Leslie Cope,et al. Clinical validation of KRAS, BRAF, and EGFR mutation detection using next-generation sequencing. , 2014, American journal of clinical pathology.
[5] Michael A. Choti,et al. DAXX/ATRX, MEN1, and mTOR Pathway Genes Are Frequently Altered in Pancreatic Neuroendocrine Tumors , 2011, Science.
[6] R. Hruban,et al. In vivo Therapeutic Responses Contingent on Fanconi Anemia/BRCA2 Status of the Tumor , 2005, Clinical Cancer Research.
[7] M. Kanda,et al. Mutant GNAS detected in duodenal collections of secretin-stimulated pancreatic juice indicates the presence or emergence of pancreatic cysts , 2012, Gut.
[8] S. Yonei,et al. Generation, biological consequences and repair mechanisms of cytosine deamination in DNA. , 2009, Journal of radiation research.
[9] R. Hruban,et al. Loss of expression of the SWI/SNF chromatin remodeling subunit BRG1/SMARCA4 is frequently observed in intraductal papillary mucinous neoplasms of the pancreas. , 2012, Human pathology.
[10] Peter Ulz,et al. Complex tumor genomes inferred from single circulating tumor cells by array-CGH and next-generation sequencing. , 2013, Cancer research.
[11] Jeffrey H. Miller,et al. Mutagenic deamination of cytosine residues in DNA , 1980, Nature.
[12] J. Jiricny,et al. A novel uracil‐DNA glycosylase with broad substrate specificity and an unusual active site , 2002, The EMBO journal.
[13] E. Seeberg,et al. Mutagenicity, toxicity and repair of DNA base damage induced by oxidation. , 2003, Mutation research.
[14] Kathleen M Murphy,et al. Comparison of Sanger sequencing, pyrosequencing, and melting curve analysis for the detection of KRAS mutations: diagnostic and clinical implications. , 2010, The Journal of molecular diagnostics : JMD.
[15] Adrian W. Briggs,et al. Removal of deaminated cytosines and detection of in vivo methylation in ancient DNA , 2009, Nucleic acids research.
[16] F. Pontén,et al. A high frequency of sequence alterations is due to formalin fixation of archival specimens. , 1999, The American journal of pathology.
[17] S. Goodman,et al. Circulating mutant DNA to assess tumor dynamics , 2008, Nature Medicine.
[18] Lincoln D. Stein,et al. Pancreatic cancer genomes reveal aberrations in axon guidance pathway genes , 2012, Nature.
[19] Jason Li,et al. Reducing sequence artifacts in amplicon-based massively parallel sequencing of formalin-fixed paraffin-embedded DNA by enzymatic depletion of uracil-containing templates. , 2013, Clinical chemistry.
[20] G. Parmigiani,et al. Detection of Chromosomal Alterations in the Circulation of Cancer Patients with Whole-Genome Sequencing , 2012, Science Translational Medicine.
[21] A. von Haeseler,et al. DNA sequences from multiple amplifications reveal artifacts induced by cytosine deamination in ancient DNA. , 2001, Nucleic acids research.
[22] Elizabeth Iorns,et al. A synthetic lethal siRNA screen identifying genes mediating sensitivity to a PARP inhibitor , 2008, The EMBO journal.
[23] A. Maitra,et al. Recurrent GNAS Mutations Define an Unexpected Pathway for Pancreatic Cyst Development , 2011, Science Translational Medicine.
[24] Francisco M. De La Vega,et al. Development of Personalized Tumor Biomarkers Using Massively Parallel Sequencing , 2010, Science Translational Medicine.
[25] Colin C Pritchard,et al. ColoSeq provides comprehensive lynch and polyposis syndrome mutational analysis using massively parallel sequencing. , 2012, The Journal of molecular diagnostics : JMD.
[26] G. Parmigiani,et al. Core Signaling Pathways in Human Pancreatic Cancers Revealed by Global Genomic Analyses , 2008, Science.
[27] J. Eshleman,et al. Δ-PCR, A Simple Method to Detect Translocations and Insertion/Deletion Mutations. , 2011, The Journal of molecular diagnostics : JMD.
[28] James R. Knight,et al. Genome sequencing in microfabricated high-density picolitre reactors , 2005, Nature.