A robust holographic autofocusing criterion based on edge sparsity: comparison of Gini index and Tamura coefficient for holographic autofocusing based on the edge sparsity of the complex optical wavefront

The Sparsity of the Gradient (SoG) is a robust autofocusing criterion for holography, where the gradient modulus of the complex refocused hologram is calculated, on which a sparsity metric is applied. Here, we compare two different choices of sparsity metrics used in SoG, specifically, the Gini index (GI) and the Tamura coefficient (TC), for holographic autofocusing on dense/connected or sparse samples. We provide a theoretical analysis predicting that for uniformly distributed image data, TC and GI exhibit similar behavior, while for naturally sparse images containing few high-valued signal entries and many low-valued noisy background pixels, TC is more sensitive to distribution changes in the signal and more resistive to background noise. These predictions are also confirmed by experimental results using SoG-based holographic autofocusing on dense and connected samples (such as stained breast tissue sections) as well as highly sparse samples (such as isolated Giardia lamblia cysts). Through these experiments, we found that ToG and GoG offer almost identical autofocusing performance on dense and connected samples, whereas for naturally sparse samples, GoG should be calculated on a relatively small region of interest (ROI) closely surrounding the object, while ToG offers more flexibility in choosing a larger ROI containing more background pixels.

[1]  Derek Tseng,et al.  Lensfree microscopy on a cellphone. , 2010, Lab on a chip.

[2]  Catherine Yourassowsky,et al.  Refocus criterion for both phase and amplitude objects in digital holographic microscopy. , 2014, Optics letters.

[3]  Catherine Yourassowsky,et al.  Focus plane detection criteria in digital holography microscopy by amplitude analysis. , 2006, Optics express.

[4]  Scott T. Rickard,et al.  Comparing Measures of Sparsity , 2008, IEEE Transactions on Information Theory.

[5]  Aydogan Ozcan,et al.  Lensless Imaging and Sensing. , 2016, Annual review of biomedical engineering.

[6]  Aydogan Ozcan,et al.  Lensless digital holographic microscopy and its applications in biomedicine and environmental monitoring. , 2017, Methods.

[7]  Caojin Yuan,et al.  Fast autofocusing in digital holography using the magnitude differential. , 2017, Applied optics.

[8]  Ting-Wei Su,et al.  Lensfree On-Chip Microscopy and Tomography for Biomedical Applications , 2012, IEEE Journal of Selected Topics in Quantum Electronics.

[9]  James R. Fienup,et al.  Phase-retrieval stagnation problems and solutions , 1986 .

[10]  I T Young,et al.  A comparison of different focus functions for use in autofocus algorithms. , 1985, Cytometry.

[11]  Aydogan Ozcan,et al.  Imaging without lenses: achievements and remaining challenges of wide-field on-chip microscopy , 2012, Nature Methods.

[12]  Aydogan Ozcan,et al.  Edge sparsity criterion for robust holographic autofocusing. , 2017, Optics letters.

[13]  Derek Tseng,et al.  Compact, light-weight and cost-effective microscope based on lensless incoherent holography for telemedicine applications. , 2010, Lab on a chip.

[14]  Bahram Javidi,et al.  Refocusing criterion via sparsity measurements in digital holography. , 2014, Optics letters.

[15]  Aydogan Ozcan,et al.  Field-portable reflection and transmission microscopy based on lensless holography , 2011, Biomedical optics express.

[16]  A. Ozcan,et al.  On-Chip Biomedical Imaging , 2013, IEEE Reviews in Biomedical Engineering.

[17]  Yibo Zhang,et al.  Wide-field computational imaging of pathology slides using lens-free on-chip microscopy , 2014, Science Translational Medicine.

[18]  A. Ozcan,et al.  Lensfree on-chip microscopy over a wide field-of-view using pixel super-resolution , 2010, Optics express.

[19]  B Javidi,et al.  Automatic focusing in digital holography and its application to stretched holograms. , 2011, Optics letters.

[20]  Robert A. King,et al.  The use of self-entropy as a focus measure in digital holography , 1989, Pattern Recognit. Lett..

[21]  A. Ozcan,et al.  Holographic pixel super-resolution in portable lensless on-chip microscopy using a fiber-optic array. , 2011, Lab on a chip.

[22]  Michael Unser,et al.  Autofocus for digital Fresnel holograms by use of a Fresnelet-sparsity criterion. , 2004, Journal of the Optical Society of America. A, Optics, image science, and vision.

[23]  Gérard Gréhan,et al.  Dual wavelength digital holography for 3D particle image velocimetry , 2015 .