Texture appearance model, a new model-based segmentation paradigm, application on the segmentation of lung nodule in the CT scan of the chest

Lung cancer causes more than one million deaths worldwide each year. Averages of 5-year survival rate of patients with Non-small cell lung cancer (NSCLC), which is the most common type of lung cancer, is 15%. Computer-Aided Detection (CAD) is a very important tool for identifying lung lesions in medical imaging. In general, the process line of a CAD system can be divided into four main stages: preprocessing, localization, feature extraction, and classification. As segmentation is required for localization in computer vision and medical image analysis, this step has become a major and challenging problem, and much research has been done on new segmentation techniques. In recent years, interest in model-based segmentation methods has increased, and the reason for this is even if some object information is lost, such gaps can be filled by using the previous information in the model. This paper proposed Texture Appearance Model (TAM), which is a new model-based method and segments all types of nodule areas accurately and efficiently, including juxta-pleural nodules, without separating the lung from the surrounding area in a CT scan of the lung. In this method, Texture Representation of Image (TRI) is obtained using tissue texture feature extraction and feature selection algorithms. The proposed method has been evaluated in 85 nodules of the dataset, received from the Iranian hospital, in which the ground-truth annotation by physicians and CT imaging data were provided. The results show that the proposed algorithm has an encouraging performance for distinguishing different types of nodules, including pleural, cavity and non-solid nodules, achieving an average dice similarity coefficient (DSC) of 84.75%.

[1]  Masoom A. Haider,et al.  Radiomics-based Prognosis Analysis for Non-Small Cell Lung Cancer , 2017, Scientific Reports.

[2]  Siegfried Trattnig,et al.  Texture‐based classification of focal liver lesions on MRI at 3.0 Tesla: A feasibility study in cysts and hemangiomas , 2010, Journal of magnetic resonance imaging : JMRI.

[3]  B. S. Manjunath,et al.  Shape prior segmentation of multiple objects with graph cuts , 2008, 2008 IEEE Conference on Computer Vision and Pattern Recognition.

[4]  Xinjian Chen,et al.  Medical Image Segmentation by Combining Graph Cuts and Oriented Active Appearance Models , 2012, IEEE Transactions on Image Processing.

[5]  B Haas,et al.  Automatic segmentation of thoracic and pelvic CT images for radiotherapy planning using implicit anatomic knowledge and organ-specific segmentation strategies , 2008, Physics in medicine and biology.

[6]  L. Schwartz,et al.  Segmentation of lung lesions on CT scans using watershed, active contours, and Markov random field. , 2013, Medical physics.

[7]  Matti Pietikäinen,et al.  Multiresolution Gray-Scale and Rotation Invariant Texture Classification with Local Binary Patterns , 2002, IEEE Trans. Pattern Anal. Mach. Intell..

[8]  Shabana Urooj,et al.  An Improved CAD System for Breast Cancer Diagnosis Based on Generalized Pseudo-Zernike Moment and Ada-DEWNN Classifier , 2016, Journal of Medical Systems.

[9]  Dawit Assefa,et al.  Robust texture features for response monitoring of glioblastoma multiforme on T1-weighted and T2-FLAIR MR images: a preliminary investigation in terms of identification and segmentation. , 2010, Medical physics.

[10]  Priyanka Agrawal,et al.  A New Hybrid Approach Using Fuzzy Clustering and Morphological Operations for Lung Segmentation in Thoracic CT Images , 2017 .

[11]  Wenqing Sun,et al.  Fast and fully-automated detection and segmentation of pulmonary nodules in thoracic CT scans using deep convolutional neural networks , 2019, Comput. Medical Imaging Graph..

[12]  Ali Iskurt,et al.  An Automatic 3-D Reconstruction of Coronary Arteries by Stereopsis , 2016, Journal of Medical Systems.

[13]  Dorin Comaniciu,et al.  Hierarchical parsing and semantic navigation of full body CT data , 2009, Medical Imaging.

[14]  F. Shariaty,et al.  Automatic lung segmentation method in computed tomography scans , 2019, Journal of Physics: Conference Series.

[15]  N. Petrick,et al.  Computer-aided classification of mammographic masses and normal tissue: linear discriminant analysis in texture feature space. , 1995, Physics in medicine and biology.

[16]  Vivek Tiwari,et al.  Active contours using global models for medical image segmentation , 2018 .

[17]  Benoit M. Dawant,et al.  Automatic segmentation of the optic nerves and chiasm in CT and MR using the atlas-navigated optimal medial axis and deformable-model algorithm , 2009, Medical Imaging.

[18]  R. N. Macsween,et al.  Computer analysis of ultrasonic signals in diffuse liver disease. , 1979, Ultrasound in medicine & biology.

[19]  Andre Dekker,et al.  Radiomics: the process and the challenges. , 2012, Magnetic resonance imaging.

[20]  L. Schad,et al.  MR image texture analysis--an approach to tissue characterization. , 1993, Magnetic resonance imaging.

[21]  Ananda S. Chowdhury,et al.  A deep learning-shape driven level set synergism for pulmonary nodule segmentation , 2019, Pattern Recognit. Lett..

[22]  H. Lyng,et al.  Integrative Analysis of DCE-MRI and Gene Expression Profiles in Construction of a Gene Classifier for Assessment of Hypoxia-Related Risk of Chemoradiotherapy Failure in Cervical Cancer , 2016, Clinical Cancer Research.

[23]  B. S. Manjunath,et al.  Texture Features for Browsing and Retrieval of Image Data , 1996, IEEE Trans. Pattern Anal. Mach. Intell..

[24]  Chin-Hui Lee,et al.  Speech recognition using weighted HMM and subspace projection approaches , 1994, IEEE Trans. Speech Audio Process..

[25]  Mahdi Orooji,et al.  The Performance of Active-Contour and Region Growing Methods Against Noises in the Segmentation of Computed-Tomography Scans , 2020 .

[26]  Bram van Ginneken,et al.  Automated segmentation of pulmonary structures in thoracic computed tomography scans: a review , 2013 .

[27]  Zulaiha Ali Othman,et al.  A Modified Active Appearance Model Based on an Adaptive Artificial Bee Colony , 2014, TheScientificWorldJournal.

[28]  Ezzeddine Zagrouba,et al.  Semi-Automated Segmentation of Single and Multiple Tumors in Liver CT Images Using Entropy-Based Fuzzy Region Growing , 2017 .

[29]  Hyunjin Park,et al.  Classification of low-grade and high-grade glioma using multi-modal image radiomics features , 2017, 2017 39th Annual International Conference of the IEEE Engineering in Medicine and Biology Society (EMBC).

[30]  Johan Trygg,et al.  ADC texture--an imaging biomarker for high-grade glioma? , 2014, Medical physics.

[31]  S. M. Collins,et al.  Range- and azimuth-dependent variability of image texture in two-dimensional echocardiograms. , 1983, Circulation.

[32]  H. Hricak,et al.  Haralick texture analysis of prostate MRI: utility for differentiating non-cancerous prostate from prostate cancer and differentiating prostate cancers with different Gleason scores , 2015, European Radiology.

[33]  A. Glinushkin,et al.  Automated pulmonary nodule detection system in computed tomography images based on Active-contour and SVM classification algorithm , 2019, Journal of Physics: Conference Series.

[34]  Robert M. Haralick,et al.  Textural Features for Image Classification , 1973, IEEE Trans. Syst. Man Cybern..

[35]  Bjarne K. Ersbøll,et al.  FAME-a flexible appearance modeling environment , 2003, IEEE Transactions on Medical Imaging.

[36]  Timothy F. Cootes,et al.  Active Shape Models-Their Training and Application , 1995, Comput. Vis. Image Underst..

[37]  Richard Beare,et al.  Marker-based watershed transform method for fully automatic mandibular segmentation from CBCT images. , 2019, Dento maxillo facial radiology.

[38]  Adelin Albert,et al.  FDG PET/CT radiomics for predicting the outcome of locally advanced rectal cancer , 2017, European Journal of Nuclear Medicine and Molecular Imaging.

[39]  M. Giger,et al.  Volumetric texture analysis of breast lesions on contrast‐enhanced magnetic resonance images , 2007, Magnetic resonance in medicine.

[40]  Aboul Ella Hassenian,et al.  CT liver tumor segmentation hybrid approach using neutrosophic sets, fast fuzzy c-means and adaptive watershed algorithm , 2019, Artif. Intell. Medicine.

[41]  Demetri Terzopoulos,et al.  Snakes: Active contour models , 2004, International Journal of Computer Vision.

[42]  Sang Joon Park,et al.  Glioma: Application of Whole-Tumor Texture Analysis of Diffusion-Weighted Imaging for the Evaluation of Tumor Heterogeneity , 2014, PloS one.

[43]  Suhair H. S. Al-Kilidar,et al.  Texture Classification Using Gradient Features with Artificial Neural Network , 2020, Journal of Southwest Jiaotong University.

[44]  Maryellen L. Giger,et al.  Computerized Analysis of Mammographic Parenchymal Patterns on a Large Clinical Dataset of Full-Field Digital Mammograms: Robustness Study with Two High-Risk Datasets , 2012, Journal of Digital Imaging.

[45]  Bin Wang,et al.  HOSVD-Based 3D Active Appearance Model: Segmentation of Lung Fields in CT Images , 2016, Journal of Medical Systems.

[46]  Hon J. Yu,et al.  Quantitative analysis of lesion morphology and texture features for diagnostic prediction in breast MRI. , 2008, Academic radiology.

[47]  J. Daugman Uncertainty relation for resolution in space, spatial frequency, and orientation optimized by two-dimensional visual cortical filters. , 1985, Journal of the Optical Society of America. A, Optics and image science.

[48]  Sonal Ayyappan,et al.  Theoretical Concepts and Technical Aspects on Image Segmentation , 2017 .

[49]  R. Krishna,et al.  Image Segmentation and Region Growing Algorithm , 2012 .

[50]  Mojtaba Mousavi,et al.  Application of CAD systems for the automatic detection of lung nodules , 2019, Informatics in Medicine Unlocked.

[51]  Pawel Badura,et al.  Soft computing approach to 3D lung nodule segmentation in CT , 2014, Comput. Biol. Medicine.

[52]  M. Stasi,et al.  Texture features on T2-weighted magnetic resonance imaging: new potential biomarkers for prostate cancer aggressiveness , 2015, Physics in medicine and biology.

[53]  Patrick Granton,et al.  Radiomics: extracting more information from medical images using advanced feature analysis. , 2012, European journal of cancer.

[54]  P. Lambin,et al.  Decoding tumour phenotype by noninvasive imaging using a quantitative radiomics approach , 2014, Nature Communications.

[55]  Chaofeng Liang,et al.  A Fully-Automatic Multiparametric Radiomics Model: Towards Reproducible and Prognostic Imaging Signature for Prediction of Overall Survival in Glioblastoma Multiforme , 2017, Scientific Reports.

[56]  D. Freedman,et al.  Joint Segmentation-Registration of Organs Using Geometric Models , 2007, 2007 29th Annual International Conference of the IEEE Engineering in Medicine and Biology Society.

[57]  R. Rabbitt,et al.  3D brain mapping using a deformable neuroanatomy. , 1994, Physics in medicine and biology.