The crossover from single file to Fickian diffusion.

The crossover from single-file diffusion, where the mean-square displacement scales as (x2) to approximately t(1/2), to normal Fickian diffusion, where (x2) to approximately t, is studied as a function of channel width for colloidal particles. By comparing Brownian dynamics to a hybrid molecular dynamics and mesoscopic simulation technique, we can study the effect of hydrodynamic interactions on the single file mobility and on the crossover to Fickian diffusion for wider channel widths. For disc-like particles with a steep interparticle repulsion, the single file mobilities for different particle densities are well described by the exactly solvable hard-rod model. This holds both for simulations that include hydrodynamics, as well as for those that do not. When the single file constraint is lifted, then for particles of diameter sigma and pipe of width L such that (L - 2sigma)/sigma = deltac << 1, the particles can be described as hopping past one-another in an average time t(hop). For shorter times t << t(hop) the particles still exhibit sub-diffusive behaviour, but at longer times t >> t(hop), normal Fickian diffusion sets in with an effective diffusion constant Dhop to approximately 1/ mean square root of t(hop). For the Brownian particles, t(hop) to approximately deltac(-2) when deltac << 1, but when hydrodynamic interactions are included, we find a stronger dependence than deltac(-2). We attribute this difference to short-range lubrication forces that make it more difficult for particles to hop past each other in very narrow channels.

[1]  Howard Brenner,et al.  The motion of a closely-fitting sphere in a fluid-filled tube , 1973 .

[2]  Oliver Beckstein,et al.  Liquid–vapor oscillations of water in hydrophobic nanopores , 2003, Proceedings of the National Academy of Sciences of the United States of America.

[3]  C M Pooley,et al.  Kinetic theory derivation of the transport coefficients of stochastic rotation dynamics. , 2005, The journal of physical chemistry. B.

[4]  Intermittent permeation of cylindrical nanopores by water. , 2002, Physical review letters.

[5]  Mati Meron,et al.  From random walk to single-file diffusion. , 2005, Physical review letters.

[6]  Jan K. G. Dhont,et al.  An introduction to dynamics of colloids , 1996 .

[7]  N. Quirke,et al.  Fluid flow in carbon nanotubes and nanopipes. , 2007, Nature nanotechnology.

[8]  J. F. Ryder,et al.  Transport coefficients of a mesoscopic fluid dynamics model , 2003, cond-mat/0302451.

[9]  G. G. Stokes "J." , 1890, The New Yale Book of Quotations.

[10]  K. K. Mon Brownian dynamics simulations of two-dimensional model for hopping times. , 2008, The Journal of chemical physics.

[11]  J. Banavar,et al.  Computer Simulation of Liquids , 1988 .

[12]  T Ihle,et al.  Stochastic rotation dynamics. I. Formalism, Galilean invariance, and Green-Kubo relations. , 2003, Physical review. E, Statistical, nonlinear, and soft matter physics.

[13]  P. Saffman Brownian motion in thin sheets of viscous fluid , 1976, Journal of Fluid Mechanics.

[14]  K. K. Mon,et al.  Hopping time of a hard disk fluid in a narrow channel. , 2007, The Journal of chemical physics.

[15]  J. Percus,et al.  Two definitions of the hopping time in a confined fluid of finite particles. , 2008, The Journal of chemical physics.

[16]  G. Hummer,et al.  Water conduction through the hydrophobic channel of a carbon nanotube , 2001, Nature.

[17]  J. Barrat,et al.  Hydrodynamic properties of confined fluids , 1996 .

[18]  W. Briels,et al.  Unidirectional diffusion of methane in AlPO4-5 , 1999 .

[19]  Gerhard Hummer,et al.  Water in nonpolar confinement: from nanotubes to proteins and beyond. , 2008, Annual review of physical chemistry.

[20]  Hiroshi Noguchi,et al.  Fluid vesicles with viscous membranes in shear flow. , 2004, Physical review letters.

[21]  P. Leiderer,et al.  Diffusion of colloids in one-dimensional light channels , 2004 .

[22]  Electric field-controlled water permeation coupled to ion transport through a nanopore. , 2003, The Journal of chemical physics.

[23]  P. Saffman,et al.  Brownian motion in biological membranes. , 1975, Proceedings of the National Academy of Sciences of the United States of America.

[24]  J. Kärger,et al.  Deviations from the Normal Time Regime of Single-File Diffusion , 1998 .

[25]  S. Quake,et al.  Microfluidics: Fluid physics at the nanoliter scale , 2005 .

[26]  Gerhard Gompper,et al.  Direct observation of hydrodynamic instabilities in a driven non-uniform colloidal dispersion , 2008, 0810.1258.

[27]  Calculation of the mean first passage time tested on simple two-dimensional models. , 2007, The Journal of chemical physics.

[28]  P. S. Burada,et al.  Diffusion in confined geometries. , 2008, Chemphyschem : a European journal of chemical physics and physical chemistry.

[29]  R. MacKinnon Potassium channels and the atomic basis of selective ion conduction (Nobel Lecture). , 2004 .

[30]  J. Padding,et al.  Interplay between hydrodynamic and Brownian fluctuations in sedimenting colloidal suspensions. , 2007, Physical review. E, Statistical, nonlinear, and soft matter physics.

[31]  T. E. Harris Diffusion with “collisions” between particles , 1965, Journal of Applied Probability.

[32]  T Ihle,et al.  Stochastic rotation dynamics. II. Transport coefficients, numerics, and long-time tails. , 2003, Physical review. E, Statistical, nonlinear, and soft matter physics.

[33]  X. Gong,et al.  Dynamics of single-file water chains inside nanoscale channels: physics, biological significance and applications , 2008 .

[34]  Berend Smit,et al.  Molecular simulations of zeolites: adsorption, diffusion, and shape selectivity. , 2008, Chemical reviews.

[35]  D. Heyes,et al.  Brownian dynamics simulations of Lennard-Jones gas/liquidphase separation and its relevance to gel formation , 1997 .

[36]  Hahn,et al.  Single-file diffusion observation. , 1996, Physical review letters.

[37]  H. Diamant,et al.  Screened hydrodynamic interaction in a narrow channel. , 2002, Physical review letters.

[38]  Jerome K. Percus,et al.  Self-diffusion of fluids in narrow cylindrical pores , 2002 .

[39]  D. Frenkel,et al.  Algebraic Decay of Velocity Fluctuations in a Confined Fluid , 1997 .

[40]  Jörg Kärger,et al.  Diffusion in Zeolites and Other Microporous Solids , 1992 .

[41]  Richard Matthews,et al.  Knot-controlled ejection of a polymer from a virus capsid. , 2009, Physical review letters.

[42]  K. K. Mon,et al.  Calculating the hopping times of confined fluids: two hard disks in a box. , 2004, The Journal of chemical physics.

[43]  D. A. Saville,et al.  Colloidal Dispersions: ACKNOWLEDGEMENTS , 1989 .

[44]  R. Kapral Multiparticle Collision Dynamics: Simulation of Complex Systems on Mesoscales , 2008 .

[45]  K. K. Mon,et al.  Hopping times of two hard disks diffusing in a channel. , 2006, The Journal of chemical physics.

[46]  Christophe Lutz,et al.  Single-file diffusion of colloids in one-dimensional channels , 2004, Science.

[47]  B. Cui,et al.  Hydrodynamic coupling in diffusion of quasi–one-dimensional Brownian particles , 2002 .

[48]  J T Padding,et al.  Hydrodynamic and brownian fluctuations in sedimenting suspensions. , 2004, Physical review letters.

[49]  J. T. Padding,et al.  Stick boundary conditions and rotational velocity auto-correlation functions for colloidal particles in a coarse-grained representation of the solvent , 2005 .

[50]  A. Malevanets,et al.  Solute molecular dynamics in a mesoscale solvent , 2000 .

[51]  Miss A.O. Penney (b) , 1974, The New Yale Book of Quotations.

[52]  J. Padding,et al.  Hydrodynamics of confined colloidal fluids in two dimensions. , 2008, Physical review. E, Statistical, nonlinear, and soft matter physics.

[53]  Clemens Bechinger,et al.  Single-file diffusion of colloids in one-dimensional channels. , 2000, Physical review letters.

[54]  A. Malevanets,et al.  Mesoscopic model for solvent dynamics , 1999 .

[55]  R. Winkler,et al.  Attractive colloidal rods in shear flow. , 2008, Physical review letters.

[56]  H. Herrmann,et al.  Simulation of claylike colloids. , 2005, Physical review. E, Statistical, nonlinear, and soft matter physics.

[57]  R. Kutner,et al.  Diffusion in concentrated lattice gases. VI. Tracer diffusion on two coupled linear chains , 1984 .

[58]  Peter Agre,et al.  Aquaporin water channels (Nobel Lecture). , 2004, Angewandte Chemie.

[59]  J. Padding,et al.  Hydrodynamic interactions and Brownian forces in colloidal suspensions: coarse-graining over time and length scales. , 2006, Physical review. E, Statistical, nonlinear, and soft matter physics.

[60]  Hiroshi Noguchi,et al.  Swinging and tumbling of fluid vesicles in shear flow. , 2007, Physical review letters.