The sensitivity of diffusion MRI to microstructural properties and experimental factors

[1]  G. Uhlenbeck,et al.  On the Theory of the Brownian Motion , 1930 .

[2]  W. S. Monkhouse,et al.  GRAY'S ANATOMY , 1947 .

[3]  S. O. Rice,et al.  Statistical properties of a sine wave plus random noise , 1948, Bell Syst. Tech. J..

[4]  C.E. Shannon,et al.  Communication in the Presence of Noise , 1949, Proceedings of the IRE.

[5]  W. Rushton.  A theory of the effects of fibre size in medullated nerve , 1951, The Journal of physiology.

[6]  Emanuel B. Kaplan.  Biomechanics of the Central Nervous System. Some Basic Normal and Pathologic Phenomena. Alf Breig. Chicago, The Year Book Publishers, Inc., 1960. $8.50 , 1960 .

[7]  Victor Braxton,et al.  Biomechanics of the central nervous system : some basic normal and pathologic phenomena , 1960 .

[8]  E. Stejskal.  Use of Spin Echoes in a Pulsed Magnetic‐Field Gradient to Study Anisotropic, Restricted Diffusion and Flow , 1965 .

[9]  J. E. Tanner,et al.  Spin diffusion measurements : spin echoes in the presence of a time-dependent field gradient , 1965 .

[10]  J. E. Tanner.  Use of the Stimulated Echo in NMR Diffusion Studies , 1970 .

[11]  R. S. Smith,et al.  Myelinated nerve fibers: computed effect of myelin thickness on conduction velocity. , 1970, The American journal of physiology.

[12]  M. Bennett,et al.  Relative conduction velocities of small myelinated and non-myelinated fibres in the central nervous system. , 1972, Nature: New biology.

[13]  K. J. Packer,et al.  Pulsed NMR studies of restricted diffusion. I. Droplet size distributions in emulsions , 1972 .

[14]  W. G. Gray,et al.  A derivation of the equations for multi-phase transport , 1975 .

[15]  P. Callaghan,et al.  Diffusion of water in the endosperm tissue of wheat grains as studied by pulsed field gradient nuclear magnetic resonance. , 1979, Biophysical journal.

[16]  J. E. Tanner,et al.  Self diffusion of water in frog muscle. , 1979, Biophysical journal.

[17]  F. Lehner,et al.  On the validity of Fick's law for transient diffusion through a porous medium , 1979 .

[18]  O. Hunziker,et al.  Postmortem changes in stereological parameters of cerebral neurons. , 1980, Pathology, research and practice.

[19]  C. Nicholson,et al.  Ion diffusion modified by tortuosity and volume fraction in the extracellular microenvironment of the rat cerebellum. , 1981, The Journal of physiology.

[20]  Jörg Kärger,et al.  The propagator representation of molecular transport in microporous crystallites , 1983 .

[21]  J M Taveras,et al.  Magnetic Resonance in Medicine , 1991, The Western journal of medicine.

[22]  R. Fadić,et al.  Microtubules and caliber of central and peripheral processes of sensory axons , 1985, The Journal of comparative neurology.

[23]  Jens Frahm,et al.  Self-diffusion NMR imaging using stimulated echoes , 1985 .

[24]  R. Henkelman.  Measurement of signal intensities in the presence of noise in MR images. , 1985, Medical physics.

[25]  A. Alavi,et al.  MR signal abnormalities at 1.5 T in Alzheimer's dementia and normal aging. , 1987, AJR. American journal of roentgenology.

[26]  E. Presecan,et al.  Effects of temperature on water diffusion in human erythrocytes and ghosts--nuclear magnetic resonance studies. , 1987, Biochimica et biophysica acta.

[27]  John F. Brady,et al.  Dispersion in Porous Media , 1988 .

[28]  P. Callaghan,et al.  RAPID COMMUNICATION: NMR microscopy of dynamic displacements: k-space and q-space imaging , 1988 .

[29]  M. Thelen,et al.  Tissue characterization with T1, T2, and proton density values: results in 160 patients with brain tumors. , 1988, Radiology.

[30]  Jörg Kärger,et al.  Principles and Application of Self-Diffusion Measurements by Nuclear Magnetic Resonance , 1988 .

[31]  D. Le Bihan,et al.  Separation of diffusion and perfusion in intravoxel incoherent motion MR imaging. , 1988, Radiology.

[32]  P. Rakić,et al.  Cytological and quantitative characteristics of four cerebral commissures in the rhesus monkey , 1990, The Journal of comparative neurology.

[33]  G Benga,et al.  On measuring the diffusional water permeability of human red blood cells and ghosts by nuclear magnetic resonance. , 1990, Journal of biochemical and biophysical methods.

[34]  J. Jonas,et al.  Histomorphometry of the human optic nerve. , 1990, Investigative ophthalmology & visual science.

[35]  P. Callaghan.  Principles of Nuclear Magnetic Resonance Microscopy , 1991 .

[36]  P. Callaghan,et al.  Diffraction-like effects in NMR diffusion studies of fluids in porous solids , 1991, Nature.

[37]  P LeDoussal,et al.  Decay of nuclear magnetization by diffusion in a parabolic magnetic field: An exactly solvable model. , 1992 .

[38]  Sen,et al.  Decay of nuclear magnetization by diffusion in a parabolic magnetic field: An exactly solvable model. , 1992, Physical review. B, Condensed matter.

[39]  W. Kuhn.  Principles of nuclear magnetic resonance microscopy. By P. T: Callaghan, Oxford Science Publications, Corby 1991, E 60.00, 492 pp., hardcover, ISBN 0-19-853944-4 , 1992 .

[40]  A. Scheibel,et al.  Fiber composition of the human corpus callosum , 1992, Brain Research.

[41]  M. LeMay,et al.  Abnormalities of the left temporal lobe and thought disorder in schizophrenia. A quantitative magnetic resonance imaging study. , 1992, The New England journal of medicine.

[42]  Aaron J. Miller,et al.  The use of power images to perform quantitative analysis on low SNR MR images. , 1993, Magnetic resonance imaging.

[43]  M. Smith,et al.  An unbiased signal-to-noise ratio measure for magnetic resonance images. , 1993, Medical physics.

[44]  K. Svoboda,et al.  Time-dependent diffusion of water in a biological model system. , 1994, Proceedings of the National Academy of Sciences of the United States of America.

[45]  D. Gadian,et al.  q‐Space imaging of the brain , 1994, Magnetic resonance in medicine.

[46]  J. Hogg.  Magnetic resonance imaging. , 1994, Journal of the Royal Naval Medical Service.

[47]  P. Basser,et al.  Estimation of the effective self-diffusion tensor from the NMR spin echo. , 1994, Journal of magnetic resonance. Series B.

[48]  C. Beaulieu,et al.  Determinants of anisotropic water diffusion in nerves , 1994, Magnetic resonance in medicine.

[49]  P. Basser,et al.  MR diffusion tensor spectroscopy and imaging. , 1994, Biophysical journal.

[50]  P van Gelderen,et al.  Water diffusion and acute stroke , 1994, Magnetic resonance in medicine.

[51]  G. Innocenti,et al.  Morphology of Callosal Axons Interconnecting Areas 17 and 18 of the Cat , 1994, The European journal of neuroscience.

[52]  K. Schmidt-Rohr,et al.  Multidimensional Solid-State Nmr and Polymers , 1994 .

[53]  Partha P. Mitra,et al.  Effects of Finite Gradient-Pulse Widths in Pulsed-Field-Gradient Diffusion Measurements , 1995 .

[54]  Paul T. Callaghan,et al.  Frequency-Domain Analysis of Spin Motion Using Modulated-Gradient NMR , 1995 .

[55]  J. Gore,et al.  Theoretical Model for Water Diffusion in Tissues , 1995, Magnetic resonance in medicine.

[56]  G. Kreutzberg,et al.  Microglia: Intrinsic immuneffector cell of the brain , 1995, Brain Research Reviews.

[57]  H. Gudbjartsson,et al.  The rician distribution of noisy mri data , 1995, Magnetic resonance in medicine.

[58]  H. Braak,et al.  Staging of alzheimer's disease-related neurofibrillary changes , 1995, Neurobiology of Aging.

[59]  Sen,et al.  Debye-Porod law of diffraction for diffusion in porous media. , 1995, Physical review. B, Condensed matter.

[60]  P W Kuchel,et al.  Effects of cholesterol on transmembrane water diffusion in human erythrocytes measured using pulsed field gradient NMR. , 1995, Biophysical chemistry.

[61]  P. V. van Zijl,et al.  Diffusion Weighting by the Trace of the Diffusion Tensor within a Single Scan , 1995, Magnetic resonance in medicine.

[62]  Mitra,et al.  Multiple wave-vector extensions of the NMR pulsed-field-gradient spin-echo diffusion measurement. , 1995, Physical review. B, Condensed matter.

[63]  A. Macovski.  Noise in MRI , 1996, Magnetic resonance in medicine.

[64]  P. Basser,et al.  Toward a quantitative assessment of diffusion anisotropy , 1996, Magnetic resonance in medicine.

[65]  T F Nonnenmacher,et al.  Anomalous diffusion of water in biological tissues. , 1996, Biophysical journal.

[66]  J. Salzer,et al.  Clustering Sodium Channels at the Node of Ranvier: Close Encounters of the Axon–Glia Kind , 1997, Neuron.

[67]  D B Hackney,et al.  Numerical model for calculation of apparent diffusion coefficients (ADC) in permeable cylinders—comparison with measured ADC in spinal cord white matter , 1997, Magnetic resonance in medicine.

[68]  E. McVeigh,et al.  Signal‐to‐noise measurements in magnitude images from NMR phased arrays , 1997 .

[69]  A. Szafer,et al.  An analytical model of restricted diffusion in bovine optic nerve , 1997, Magnetic resonance in medicine.

[70]  R. Pons,et al.  Diffraction-like effects in a highly concentrated W/O emulsion: a PFG NMR study. , 1998, Magnetic resonance imaging.

[71]  Ralf Metzler,et al.  NMR Studies of Anomalous Diffusion in Biological Tissues: Experimental Observation of Lévy Stable Processes , 1998 .

[72]  M. I. Smith,et al.  A study of rotationally invariant and symmetric indices of diffusion anisotropy. , 1999, Magnetic resonance imaging.

[73]  Hisashi Q. Higuchi.  On the nature of , 1999 .

[74]  D. Cory,et al.  Multiple Scattering by NMR , 1999 .

[75]  P. Boesiger,et al.  SENSE: Sensitivity encoding for fast MRI , 1999, Magnetic resonance in medicine.

[76]  P. V. van Zijl,et al.  Three‐dimensional tracking of axonal projections in the brain by magnetic resonance imaging , 1999, Annals of neurology.

[77]  M. Raichle,et al.  Tracking neuronal fiber pathways in the living human brain. , 1999, Proceedings of the National Academy of Sciences of the United States of America.

[78]  S Skare,et al.  Condition number as a measure of noise performance of diffusion tensor data acquisition schemes with MRI. , 2000, Journal of magnetic resonance.

[79]  Y. Cohen,et al.  Displacement imaging of spinal cord using q‐space diffusion‐weighted MRI , 2000, Magnetic resonance in medicine.

[80]  P. Basser,et al.  In vivo fiber tractography using DT‐MRI data , 2000, Magnetic resonance in medicine.

[81]  D. O. Walsh,et al.  Adaptive reconstruction of phased array MR imagery , 2000, Magnetic resonance in medicine.

[82]  R Gruetter,et al.  Extracellular–Intracellular Distribution of Glucose and Lactate in the Rat Brain Assessed Noninvasively by Diffusion-Weighted 1H Nuclear Magnetic Resonance Spectroscopy In Vivo , 2000, Journal of cerebral blood flow and metabolism : official journal of the International Society of Cerebral Blood Flow and Metabolism.

[83]  Rebecca A. Efroymson,et al.  Analysis of Effects , 2000 .

[84]  D. Parker,et al.  Analysis of partial volume effects in diffusion‐tensor MRI , 2001, Magnetic resonance in medicine.

[85]  D L Buckley,et al.  Visualization of neural tissue water compartments using biexponential diffusion tensor MRI , 2001, Magnetic resonance in medicine.

[86]  N. Baumann,et al.  Biology of oligodendrocyte and myelin in the mammalian central nervous system. , 2001, Physiological reviews.

[87]  A. Muacevic,et al.  The Risk of Haemorrhage after Image Guided Stereotactic Biopsy of Intra-Axial Brain Tumours – A Prospective Study , 2001, Acta Neurochirurgica.

[88]  J. Fiala,et al.  Dendrite Structure , 2001 .

[89]  Haruyasu Yamada,et al.  Normal aging in the central nervous system: quantitative MR diffusion-tensor analysis , 2002, Neurobiology of Aging.

[90]  N. Makris,et al.  High angular resolution diffusion imaging reveals intravoxel white matter fiber heterogeneity , 2002, Magnetic resonance in medicine.

[91]  Risto A Kauppinen,et al.  Monitoring cytotoxic tumour treatment response by diffusion magnetic resonance imaging and proton spectroscopy , 2002, NMR in biomedicine.

[92]  Daniel Topgaard,et al.  Restricted self-diffusion of water in a highly concentrated w/o emulsion studied using modulated gradient spin-echo NMR. , 2002, Journal of magnetic resonance.

[93]  Stephen J Blackband,et al.  Human erythrocyte ghosts: Exploring the origins of multiexponential water diffusion in a model biological tissue with magnetic resonance , 2002, Magnetic resonance in medicine.

[94]  Robin M Heidemann,et al.  Generalized autocalibrating partially parallel acquisitions (GRAPPA) , 2002, Magnetic resonance in medicine.

[95]  Jing-Huei Lee,et al.  Deconvolution of compartmental water diffusion coefficients in yeast-cell suspensions using combined T(1) and diffusion measurements. , 2002, Journal of magnetic resonance.

[96]  I. Furó,et al.  NMR methods applied to anisotropic diffusion , 2002 .

[97]  P. Basser.  Relationships between diffusion tensor and q‐space MRI † , 2002, Magnetic resonance in medicine.

[98]  Braitenberg,et al.  The Human Cortical White Matter: Quantitative Aspects of Cortico-Cortical Long-Range Connectivity , 2002 .

[99]  Cherl‐Ho Lee,et al.  Water self-diffusion behavior in yeast cells studied by pulsed field gradient NMR. , 2003, Biophysical chemistry.

[100]  D. Le Bihan.  Looking into the functional architecture of the brain with diffusion MRI , 2003, Nature reviews. Neuroscience.

[101]  Mattias Edén,et al.  Computer simulations in solid-state NMR. III. powder averaging , 2003 .

[102]  G. L. Bretthorst,et al.  Statistical model for diffusion attenuated MR signal , 2003, Magnetic resonance in medicine.

[103]  Denis Le Bihan,et al.  Looking into the functional architecture of the brain with diffusion MRI , 2003, Nature Reviews Neuroscience.

[104]  Timothy Edward John Behrens,et al.  Characterization and propagation of uncertainty in diffusion‐weighted MR imaging , 2003, Magnetic resonance in medicine.

[105]  V. Wedeen,et al.  Reduction of eddy‐current‐induced distortion in diffusion MRI using a twice‐refocused spin echo , 2003, Magnetic resonance in medicine.

[106]  P. Callaghan,et al.  Use of the second dimension in PGSE NMR studies of porous media. , 2003, Magnetic resonance imaging.

[107]  Mattias Edén,et al.  Computer Simulations in Solid-State NMR. Part 1. Spin Dynamics Theory , 2003 .

[108]  D. Yablonskiy,et al.  On the nature of the NAA diffusion attenuated MR signal in the central nervous system , 2004, Magnetic resonance in medicine.

[109]  P. Basser,et al.  New modeling and experimental framework to characterize hindered and restricted water diffusion in brain white matter , 2004, Magnetic resonance in medicine.

[110]  Derek K. Jones,et al.  The effect of gradient sampling schemes on measures derived from diffusion tensor MRI: A Monte Carlo study † , 2004, Magnetic resonance in medicine.

[111]  P. Kingsley,et al.  Selection of the optimum b factor for diffusion‐weighted magnetic resonance imaging assessment of ischemic stroke , 2004, Magnetic resonance in medicine.

[112]  Alan Connelly,et al.  Direct estimation of the fiber orientation density function from diffusion-weighted MRI data using spherical deconvolution , 2004, NeuroImage.

[113]  Derek K. Jones,et al.  “Squashing peanuts and smashing pumpkins”: How noise distorts diffusion‐weighted MR data , 2004, Magnetic resonance in medicine.

[114]  P. Callaghan,et al.  Diffusion-diffusion correlation and exchange as a signature for local order and dynamics. , 2004, The Journal of chemical physics.

[115]  M. Moseley,et al.  Magnetic Resonance in Medicine 51:924–937 (2004) Characterizing Non-Gaussian Diffusion by Using Generalized Diffusion Tensors , 2022 .

[116]  Hiroyuki Kabasawa,et al.  Diffusion tensor imaging for preoperative evaluation of tumor grade in gliomas , 2005, Clinical Neurology and Neurosurgery.

[117]  J. Helpern,et al.  Diffusional kurtosis imaging: The quantification of non‐gaussian water diffusion by means of magnetic resonance imaging , 2005, Magnetic resonance in medicine.

[118]  A. Anderson.  Measurement of fiber orientation distributions using high angular resolution diffusion imaging , 2005, Magnetic resonance in medicine.

[119]  Yaniv Assaf,et al.  Composite hindered and restricted model of diffusion (CHARMED) MR imaging of the human brain , 2005, NeuroImage.

[120]  P. Hagmann,et al.  Mapping complex tissue architecture with diffusion spectrum magnetic resonance imaging , 2005, Magnetic resonance in medicine.

[121]  Michael A. King,et al.  MR microscopy of rat hippocampal slice cultures: A novel model for studying cellular processes and chronic perturbations to tissue microstructure , 2006, NeuroImage.

[122]  Cheng Guan Koay,et al.  Analytically exact correction scheme for signal extraction from noisy magnitude MR signals. , 2006, Journal of magnetic resonance.

[123]  Peter J Basser,et al.  Observation of anomalous diffusion in excised tissue by characterizing the diffusion-time dependence of the MR signal. , 2006, Journal of magnetic resonance.

[124]  F. Ståhlberg,et al.  Denoising of complex MRI data by wavelet‐domain filtering: Application to high‐b‐value diffusion‐weighted imaging , 2006, Magnetic resonance in medicine.

[125]  Daniel Topgaard,et al.  Mapping the intracellular fraction of water by varying the gradient pulse length in q-space diffusion MRI. , 2006, Journal of magnetic resonance.

[126]  P. Basser,et al.  A unifying theoretical and algorithmic framework for least squares methods of estimation in diffusion tensor imaging. , 2006, Journal of magnetic resonance.

[127]  Alex J. de Crespigny,et al.  An approach to high resolution diffusion tensor imaging in fixed primate brain , 2007, NeuroImage.

[128]  Andrew L. Alexander,et al.  Hybrid diffusion imaging , 2007, NeuroImage.

[129]  Fritz Schick,et al.  Signal losses in diffusion preparation: Comparison between spin-echo, stimulated echo and SEASON , 1998, Magnetic Resonance Materials in Physics, Biology and Medicine.

[130]  Baba C. Vemuri,et al.  A novel tensor distribution model for the diffusion-weighted MR signal , 2007, NeuroImage.

[131]  Mariano Rivera,et al.  Diffusion Basis Functions Decomposition for Estimating White Matter Intravoxel Fiber Geometry , 2007, IEEE Transactions on Medical Imaging.

[132]  Leif Østergaard,et al.  Modeling dendrite density from magnetic resonance diffusion measurements , 2007, NeuroImage.

[133]  Jochen Winkelmann.  Diffusion of water , 2007 .

[134]  Peter J Basser,et al.  MR diffusion - "diffraction" phenomenon in multi-pulse-field-gradient experiments. , 2007, Journal of magnetic resonance.

[135]  Markus Nilsson,et al.  Effects of restricted diffusion in a biological phantom: a q-space diffusion MRI study of asparagus stems at a 3T clinical scanner , 2007, Magnetic Resonance Materials in Physics, Biology and Medicine.

[136]  P J Basser,et al.  Detection of microscopic anisotropy in gray matter and in a novel tissue phantom using double Pulsed Gradient Spin Echo MR. , 2007, Journal of magnetic resonance.

[137]  Andreas Greiner,et al.  Electrospinning: a fascinating method for the preparation of ultrathin fibers. , 2007, Angewandte Chemie.

[138]  Mark W. Woolrich,et al.  Probabilistic diffusion tractography with multiple fibre orientations: What can we gain? , 2007, NeuroImage.

[139]  Jerry L. Prince,et al.  Effects of diffusion weighting schemes on the reproducibility of DTI-derived fractional anisotropy, mean diffusivity, and principal eigenvector measurements at 1.5T , 2007, NeuroImage.

[140]  Michel Osteaux,et al.  Echo planar magnetic resonance imaging of anisotropic diffusion in asparagus stems , 2001, Magnetic Resonance Materials in Physics, Biology and Medicine.

[141]  Thomas R. Knösche,et al.  Parametric spherical deconvolution: Inferring anatomical connectivity using diffusion MR imaging , 2007, NeuroImage.

[142]  R. Kikinis,et al.  A review of diffusion tensor imaging studies in schizophrenia. , 2007, Journal of psychiatric research.

[143]  S. Schoenberg,et al.  Influence of multichannel combination, parallel imaging and other reconstruction techniques on MRI noise characteristics. , 2008, Magnetic resonance imaging.

[144]  Pierrick Coupé,et al.  Rician Noise Removal by Non-Local Means Filtering for Low Signal-to-Noise Ratio MRI: Applications to DT-MRI , 2008, MICCAI.

[145]  Paul M. Thompson,et al.  The tensor distribution function , 2008, 2008 5th IEEE International Symposium on Biomedical Imaging: From Nano to Macro.

[146]  C. Nicholson,et al.  Diffusion in brain extracellular space. , 2008, Physiological reviews.

[147]  P. Basser,et al.  Axcaliber: A method for measuring axon diameter distribution from diffusion MRI , 2008, Magnetic resonance in medicine.

[148]  Andre D. A. Souza,et al.  Indirect measurement of regional axon diameter in excised mouse spinal cord with q-space imaging: Simulation and experimental studies , 2008, NeuroImage.

[149]  Li-Wei Kuo,et al.  Optimization of diffusion spectrum imaging and q-ball imaging on clinical MRI system , 2008, NeuroImage.

[150]  Yaniv Assaf,et al.  Three‐dimensional water diffusion in impermeable cylindrical tubes: theory versus experiments , 2008, NMR in biomedicine.

[151]  Andrew L. Alexander,et al.  Computation of Diffusion Function Measures in $q$ -Space Using Magnetic Resonance Hybrid Diffusion Imaging , 2008, IEEE Transactions on Medical Imaging.

[152]  Jürgen Finsterbusch,et al.  Compartment size estimation with double wave vector diffusion‐weighted imaging , 2008, Magnetic resonance in medicine.

[153]  Peter J Basser,et al.  Microscopic anisotropy revealed by NMR double pulsed field gradient experiments with arbitrary timing parameters. , 2008, The Journal of chemical physics.

[154]  Chun-Hung Yeh,et al.  Resolving crossing fibres using constrained spherical deconvolution: Validation using diffusion-weighted imaging phantom data , 2008, NeuroImage.

[155]  D. Alexander.  A general framework for experiment design in diffusion MRI and its application in measuring direct tissue‐microstructure features , 2008, Magnetic resonance in medicine.

[156]  B. Pakkenberg,et al.  Neocortical glial cell numbers in human brains , 2008, Neurobiology of Aging.

[157]  Daniel C. Alexander,et al.  Convergence and Parameter Choice for Monte-Carlo Simulations of Diffusion MRI , 2009, IEEE Transactions on Medical Imaging.

[158]  Cheng Guan Koay,et al.  Remarks on q-space MR propagator in partially restricted, axially-symmetric, and isotropic environments. , 2009, Magnetic resonance imaging.

[159]  M. Powell.  The BOBYQA algorithm for bound constrained optimization without derivatives , 2009 .

[160]  Gregory T. Balls,et al.  A simulation environment for diffusion weighted MR experiments in complex media , 2009, Magnetic resonance in medicine.

[161]  Vincent J Schmithorst,et al.  Altered myelination and axonal integrity in adults with childhood lead exposure: a diffusion tensor imaging study. , 2009, Neurotoxicology.

[162]  Jürgen Finsterbusch,et al.  Extension of the double-wave-vector diffusion-weighting experiment to multiple concatenations. , 2009, Journal of magnetic resonance.

[163]  R. Caminiti,et al.  Evolution amplified processing with temporally dispersed slow neuronal connectivity in primates , 2009, Proceedings of the National Academy of Sciences.

[164]  Hideyuki Okano,et al.  Visualization of peripheral nerve degeneration and regeneration: Monitoring with diffusion tensor tractography , 2009, NeuroImage.

[165]  Peter J Basser,et al.  A general framework to quantify the effect of restricted diffusion on the NMR signal with applications to double pulsed field gradient NMR experiments. , 2009, The Journal of chemical physics.

[166]  A. Toga,et al.  The tensor distribution function , 2009, Magnetic resonance in medicine.

[167]  F. Ståhlberg,et al.  On the effects of a varied diffusion time in vivo: is the diffusion in white matter restricted? , 2009, Magnetic resonance imaging.

[168]  Karsten Nielsen,et al.  In Vitro Magnetic Stimulation of Pig Phrenic Nerve With Transverse and Longitudinal Induced Electric Fields: Analysis of the Stimulation Site , 2009, IEEE Transactions on Biomedical Engineering.

[169]  Santiago Aja-Fernández,et al.  Noise estimation in single- and multiple-coil magnetic resonance data based on statistical models. , 2009, Magnetic resonance imaging.

[170]  Evren Ozarslan,et al.  Compartment shape anisotropy (CSA) revealed by double pulsed field gradient MR. , 2009, Journal of magnetic resonance.

[171]  A. Madabhushi,et al.  Histopathological Image Analysis: A Review , 2009, IEEE Reviews in Biomedical Engineering.

[172]  Evren Özarslan,et al.  Compartment shape anisotropy (CSA) revealed by double pulsed field gradient MR , 2009 .

[173]  Katsuhiro Ichikawa,et al.  Bulk motion-independent analyses of water diffusion changes in the brain during the cardiac cycle , 2009, Radiological physics and technology.

[174]  P. Sterling,et al.  How the Optic Nerve Allocates Space, Energy Capacity, and Information , 2009, The Journal of Neuroscience.

[175]  J. Finsterbusch.  Eddy‐current compensated diffusion weighting with a single refocusing RF pulse , 2009, Magnetic resonance in medicine.

[176]  Olaf Sporns,et al.  What Is the Human Connectome , 2009 .

[177]  M. Nilsson,et al.  Filter-exchange PGSE NMR determination of cell membrane permeability. , 2009, Journal of magnetic resonance.

[178]  P. Basser,et al.  In vivo measurement of axon diameter distribution in the corpus callosum of rat brain. , 2009, Brain : a journal of neurology.

[179]  Peter J Basser,et al.  Measuring small compartmental dimensions with low-q angular double-PGSE NMR: The effect of experimental parameters on signal decay. , 2009, Journal of magnetic resonance.

[180]  Alistair Elfick,et al.  Nonlinear optical microscopy for drug delivery monitoring and cancer tissue imaging , 2010 .

[181]  Daniel C Alexander,et al.  Optimizing gradient waveforms for microstructure sensitivity in diffusion-weighted MR. , 2010, Journal of magnetic resonance.

[182]  Pierrick Coupé,et al.  Author manuscript, published in "Journal of Magnetic Resonance Imaging 2010;31(1):192-203" DOI: 10.1002/jmri.22003 Adaptive Non-Local Means Denoising of MR Images with Spatially Varying Noise Levels , 2010 .

[183]  H. Gundersen,et al.  Stereological estimation of the total number of ventilatory units in mice lungs , 2010, Journal of microscopy.

[184]  Daniel C. Alexander,et al.  MicroTrack: An Algorithm for Concurrent Projectome and Microstructure Estimation , 2010, MICCAI.

[185]  D. Barazany,et al.  AxCaliber 3D , 2010 .

[186]  A. Dale,et al.  Quantitative Histological Validation of Diffusion MRI Fiber Orientation Distributions in the Rat Brain , 2010, PloS one.

[187]  F. Ståhlberg,et al.  Evaluating the accuracy and precision of a two-compartment Kärger model using Monte Carlo simulations. , 2010, Journal of magnetic resonance.

[188]  Junzhong Xu,et al.  Characterization of tissue structure at varying length scales using temporal diffusion spectroscopy , 2010, NMR in biomedicine.

[189]  Julien Valette,et al.  A new volume selective sequence for single-shot diffusion-weighting by the trace of the diffusion tensor , 2010 .

[190]  M. Mallar Chakravarty,et al.  Neurite density from magnetic resonance diffusion measurements at ultrahigh field: Comparison with light microscopy and electron microscopy , 2010, NeuroImage.

[191]  Peter J Basser,et al.  Noninvasive bipolar double-pulsed-field-gradient NMR reveals signatures for pore size and shape in polydisperse, randomly oriented, inhomogeneous porous media. , 2010, The Journal of chemical physics.

[192]  Peter J Basser,et al.  Detecting diffusion-diffraction patterns in size distribution phantoms using double-pulsed field gradient NMR: Theory and experiments. , 2010, The Journal of chemical physics.

[193]  Tim B. Dyrby,et al.  Orientationally invariant indices of axon diameter and density from diffusion MRI , 2010, NeuroImage.

[194]  Mark F. Lythgoe,et al.  High-Fidelity Meshes from Tissue Samples for Diffusion MRI Simulations , 2010, MICCAI.

[195]  Niels Buhl,et al.  The displacement correlation tensor: microstructure, ensemble anisotropy and curving fibers. , 2011, Journal of magnetic resonance.

[196]  Gemma Louise Morgan,et al.  Regional variation models of white matter microstructure , 2011 .

[197]  Wolfhard Semmler,et al.  Determination of the defining boundary in nuclear magnetic resonance diffusion experiments. , 2011, Physical review letters.

[198]  E. Özarslan,et al.  Double pulsed field gradient (double‐PFG) MR imaging (MRI) as a means to measure the size of plant cells , 2011, Magnetic resonance in chemistry : MRC.

[199]  Max A. Viergever,et al.  Partial volume effect as a hidden covariate in DTI analyses , 2011, NeuroImage.

[200]  Daniel C Alexander,et al.  Optimising time-varying gradient orientation for microstructure sensitivity in diffusion-weighted MR. , 2011, Journal of magnetic resonance.

[201]  Paul T. Callaghan,et al.  Translational Dynamics and Magnetic Resonance: Principles of Pulsed Gradient Spin Echo NMR , 2011 .

[202]  Joseph A. Helpern,et al.  White matter characterization with diffusional kurtosis imaging , 2011, NeuroImage.

[203]  Jacques-Donald Tournier,et al.  Diffusion tensor imaging and beyond , 2011, Magnetic resonance in medicine.

[204]  Hui Zhang,et al.  Axon diameter mapping in the presence of orientation dispersion with diffusion MRI , 2011, NeuroImage.

[205]  F. Ståhlberg,et al.  Apparent exchange rate mapping with diffusion MRI , 2011, Magnetic resonance in medicine.

[206]  Rachid Deriche,et al.  Multiple q-shell diffusion propagator imaging , 2011, Medical Image Anal..

[207]  Bente Pakkenberg,et al.  Stereological estimation of the total number of myelinated callosal fibers in human subjects , 2011, Journal of anatomy.

[208]  Cheng Guan Koay,et al.  Nuclear magnetic resonance characterization of general compartment size distributions , 2011 .

[209]  Brian A. Wandell,et al.  Bound pool fractions complement diffusion measures to describe white matter micro and macrostructure , 2011, NeuroImage.

[210]  Ragini Verma,et al.  Effects of physiological noise in population analysis of diffusion tensor MRI data , 2011, NeuroImage.

[211]  W. Hoge,et al.  Statistical noise analysis in GRAPPA using a parametrized noncentral Chi approximation model , 2011, Magnetic resonance in medicine.

[212]  C. Westin,et al.  An introduction to diffusion tensor image analysis. , 2011, Neurosurgery clinics of North America.

[213]  Yoram Cohen,et al.  Probing microscopic architecture of opaque heterogeneous systems using double-pulsed-field-gradient NMR. , 2011, Journal of the American Chemical Society.

[214]  W. Baaré,et al.  An ex vivo imaging pipeline for producing high‐quality and high‐resolution diffusion‐weighted imaging datasets , 2011, Human brain mapping.

[215]  Jürgen Finsterbusch.  The parallel-antiparallel signal difference in double-wave-vector diffusion-weighted MR at short mixing times: a phase evolution perspective. , 2011, Journal of magnetic resonance.

[216]  Tim B. Dyrby,et al.  Assessing exchange between multiple compartments using multi-directional double wave diffusion sequences , 2011 .

[217]  K. Trinkaus,et al.  Quantification of increased cellularity during inflammatory demyelination. , 2011, Brain : a journal of neurology.

[218]  Hamid Soltanian-Zadeh,et al.  Tract based spatial statistical analysis and voxel based morphometry of diffusion indices in temporal lobe epilepsy , 2011, Comput. Biol. Medicine.

[219]  Elias Kellner,et al.  About the Geometry of Asymmetric Fiber Orientation Distributions , 2012, IEEE Transactions on Medical Imaging.

[220]  Mary E. Meyerand,et al.  Sparse and Optimal Acquisition Design for Diffusion MRI and Beyond , 2012, Medical physics.

[221]  S. Aoki,et al.  Magnetic resonance , 2012, International Journal of Computer Assisted Radiology and Surgery.

[222]  Daniel C. Alexander,et al.  NODDI: Practical in vivo neurite orientation dispersion and density imaging of the human brain , 2012, NeuroImage.

[223]  J. Polimeni,et al.  Blipped‐controlled aliasing in parallel imaging for simultaneous multislice echo planar imaging with reduced g‐factor penalty , 2012, Magnetic resonance in medicine.

[224]  Timothy Edward John Behrens,et al.  Ball and rackets: Inferring fiber fanning from diffusion-weighted MRI , 2012, NeuroImage.

[225]  Daniel C Alexander,et al.  Estimation of pore size in a microstructure phantom using the optimised gradient waveform diffusion weighted NMR sequence. , 2012, Journal of magnetic resonance.

[226]  R. Kikinis,et al.  A review of magnetic resonance imaging and diffusion tensor imaging findings in mild traumatic brain injury , 2012, Brain Imaging and Behavior.

[227]  W. Denk,et al.  Staining and embedding the whole mouse brain for electron microscopy , 2012, Nature Methods.

[228]  Ann S. Choe,et al.  Validation of diffusion tensor MRI in the central nervous system using light microscopy: quantitative comparison of fiber properties , 2012, NMR in biomedicine.

[229]  Stephen E. Rose,et al.  Diffusion MRI of the neonate brain: acquisition, processing and analysis techniques , 2012, Pediatric Radiology.

[230]  Cheng Guan Koay,et al.  Temporal scaling characteristics of diffusion as a new MRI contrast: Findings in rat hippocampus , 2012, NeuroImage.

[231]  Manuel Graña,et al.  Model‐based analysis of multishell diffusion MR data for tractography: How to get over fitting problems , 2012, Magnetic resonance in medicine.

[232]  F. Ståhlberg,et al.  The importance of axonal undulation in diffusion MR measurements: a Monte Carlo simulation study , 2012, NMR in biomedicine.

[233]  Yoram Cohen,et al.  Accurate noninvasive measurement of cell size and compartment shape anisotropy in yeast cells using double‐pulsed field gradient MR , 2012, NMR in biomedicine.

[234]  Steen Moeller,et al.  The Human Connectome Project: A data acquisition perspective , 2012, NeuroImage.

[235]  Mark F. Lythgoe,et al.  Compartment models of the diffusion MR signal in brain white matter: A taxonomy and comparison , 2012, NeuroImage.

[236]  Nadim Joni Shah,et al.  Spatially variable Rician noise in magnetic resonance imaging , 2012, Medical Image Anal..

[237]  Thomas R. Knösche,et al.  k-space and q-space: Combining ultra-high spatial and angular resolution in diffusion imaging using ZOOPPA at 7T , 2012, NeuroImage.

[238]  A. Leemans,et al.  Comprehensive framework for accurate diffusion MRI parameter estimation , 2013, Magnetic resonance in medicine.

[239]  A. Alexander,et al.  Bessel Fourier Orientation Reconstruction (BFOR): An analytical diffusion propagator reconstruction for hybrid diffusion imaging and computation of q-space indices , 2013, NeuroImage.

[240]  B Siow,et al.  A viable isolated tissue system: A tool for detailed MR measurements and controlled perturbation in physiologically stable tissue , 2013, Magnetic resonance in medicine.

[241]  Bennett A Landman,et al.  Assessment of bias in experimentally measured diffusion tensor imaging parameters using SIMEX , 2013, Magnetic resonance in medicine.

[242]  M. Ptito,et al.  Contrast and stability of the axon diameter index from microstructure imaging with diffusion MRI , 2012, Magnetic resonance in medicine.

[243]  Peter J. Basser,et al.  In vivo detection of microscopic anisotropy using quadruple pulsed-field gradient (qPFG) diffusion MRI on a clinical scanner , 2013, NeuroImage.

[244]  Peter J. Basser,et al.  An Optimum Principle Predicts the Distribution of Axon Diameters in Normal White Matter , 2013, PloS one.

[245]  Jan Sijbers,et al.  Weighted linear least squares estimation of diffusion MRI parameters: Strengths, limitations, and pitfalls , 2013, NeuroImage.

[246]  Borjan Gagoski,et al.  Diffusion Propagator Estimation from Sparse Measurements in a Tractography Framework , 2013, MICCAI.

[247]  Timothy Edward John Behrens,et al.  Effects of image reconstruction on fiber orientation mapping from multichannel diffusion MRI: Reducing the noise floor using SENSE , 2013, Magnetic resonance in medicine.

[248]  Julien Cohen-Adad,et al.  The Human Connectome Project and beyond: Initial applications of 300mT/m gradients , 2013, NeuroImage.

[249]  Olivia K. Faull,et al.  Physiological Noise in Brainstem fMRI , 2013, Front. Hum. Neurosci..

[250]  Santiago Aja-Fernández,et al.  Effective noise estimation and filtering from correlated multiple-coil MR data. , 2013, Magnetic resonance imaging.

[251]  F. Ståhlberg,et al.  The role of tissue microstructure and water exchange in biophysical modelling of diffusion in white matter , 2013, Magnetic Resonance Materials in Physics, Biology and Medicine.

[252]  Rachid Deriche,et al.  Continuous diffusion signal, EAP and ODF estimation via Compressive Sensing in diffusion MRI , 2013, Medical Image Anal..

[253]  Carlo Pierpaoli,et al.  Mean apparent propagator (MAP) MRI: A novel diffusion imaging method for mapping tissue microstructure , 2013, NeuroImage.

[254]  D. Louis Collins,et al.  Diffusion Weighted Image Denoising Using Overcomplete Local PCA , 2013, PloS one.

[255]  Helen D'Arceuil,et al.  Probing tissue microstructure with restriction spectrum imaging: Histological and theoretical validation , 2013, Human brain mapping.

[256]  A. Connelly,et al.  Determination of the appropriate b value and number of gradient directions for high‐angular‐resolution diffusion‐weighted imaging , 2013, NMR in biomedicine.

[257]  C. Sønderby,et al.  Orientationally invariant metrics of apparent compartment eccentricity from double pulsed field gradient diffusion experiments , 2013, NMR in biomedicine.

[258]  N. Logothetis,et al.  Scaling Brain Size, Keeping Timing: Evolutionary Preservation of Brain Rhythms , 2013, Neuron.

[259]  Gordon L. Kindlmann,et al.  The effects of noise over the complete space of diffusion tensor shape , 2014, Medical Image Anal..

[260]  Santiago Aja-Fernández,et al.  Noise estimation in parallel MRI: GRAPPA and SENSE. , 2014, Magnetic resonance imaging.

[261]  Derek K. Jones,et al.  Why diffusion tensor MRI does well only some of the time: Variance and covariance of white matter tissue microstructure attributes in the living human brain☆ , 2014, NeuroImage.

[262]  Els Fieremans,et al.  Revealing mesoscopic structural universality with diffusion , 2014, Proceedings of the National Academy of Sciences.

[263]  Daniel C Alexander,et al.  Viable and fixed white matter: Diffusion magnetic resonance comparisons and contrasts at physiological temperature , 2014, Magnetic resonance in medicine.

[264]  E. Hoving,et al.  The role of diffusion tensor imaging in brain tumor surgery: A review of the literature , 2014, Clinical Neurology and Neurosurgery.

[265]  R. Caminiti,et al.  The diameter of cortical axons depends both on the area of origin and target. , 2014, Cerebral cortex.

[266]  John C Gore,et al.  Fast and robust measurement of microstructural dimensions using temporal diffusion spectroscopy. , 2014, Journal of magnetic resonance.

[267]  F. Szczepankiewicz,et al.  Microanisotropy imaging: quantification of microscopic diffusion anisotropy and orientational order parameter by diffusion MRI with magic-angle spinning of the q-vector , 2014, Front. Physics.

[268]  Maxime Descoteaux,et al.  Dipy, a library for the analysis of diffusion MRI data , 2014, Front. Neuroinform..

[269]  J Sijbers,et al.  Data distributions in magnetic resonance images: a review. , 2014, Physica medica : PM : an international journal devoted to the applications of physics to medicine and biology : official journal of the Italian Association of Biomedical Physics.

[270]  P. Ellen Grant,et al.  Multi-shell diffusion signal recovery from sparse measurements , 2014, Medical Image Anal..

[271]  David C. Van Essen,et al.  Human Connectome Project , 2014, Encyclopedia of Computational Neuroscience.

[272]  Dan Benjamini,et al.  Nonparametric pore size distribution using d-PFG: comparison to s-PFG and migration to MRI. , 2014, Journal of magnetic resonance.

[273]  Nikos K. Logothetis,et al.  Distribution of axon diameters in cortical white matter: an electron-microscopic study on three human brains and a macaque , 2014, Biological Cybernetics.

[274]  Dmitry S. Novikov,et al.  MesoFT: Unifying Diffusion Modelling and Fiber Tracking , 2014, MICCAI.

[275]  P. Coupé,et al.  Non Local Spatial and Angular Matching : a new denoising technique for diffusion MRI , 2014 .

[276]  Hua Li,et al.  Mapping mean axon diameter and axonal volume fraction by MRI using temporal diffusion spectroscopy , 2014, NeuroImage.

[277]  Daniel C Alexander,et al.  Multimodality characterization of microstructure by the combination of diffusion NMR and time-domain diffuse optical data , 2014, Physics in medicine and biology.

[278]  Jean-Philippe Thiran,et al.  Accelerated Microstructure Imaging via Convex Optimization (AMICO) from diffusion MRI data , 2015, NeuroImage.

[279]  Santiago Aja-Fernández,et al.  Spatially variant noise estimation in MRI: A homomorphic approach , 2015, Medical Image Anal..

[280]  Rachid Deriche,et al.  Sparse Reconstruction Challenge for diffusion MRI: Validation on a physical phantom to determine which acquisition scheme and analysis method to use? , 2015, Medical Image Anal..

[281]  Lucio Frydman,et al.  Size Distribution Imaging by Non-Uniform Oscillating-Gradient Spin Echo (NOGSE) MRI , 2015, PloS one.

[282]  Aleksandra Pizurica,et al.  The effect of Gibbs ringing artifacts on measures derived from diffusion MRI , 2015, NeuroImage.

[283]  Pierrick Coupé,et al.  MRI noise estimation and denoising using non-local PCA , 2015, Medical Image Anal..

[284]  P. Hubbard,et al.  Biomimetic phantom for the validation of diffusion magnetic resonance imaging , 2015, Magnetic resonance in medicine.

[285]  Dmitry S. Novikov,et al.  Mesoscopic structure of neuronal tracts from time-dependent diffusion , 2015, NeuroImage.

[286]  Carl-Fredrik Westin,et al.  NMR diffusion-encoding with axial symmetry and variable anisotropy: Distinguishing between prolate and oblate microscopic diffusion tensors with unknown orientation distribution. , 2015, The Journal of chemical physics.

[287]  Thomas Schultz,et al.  Quantifying Microstructure in Fiber Crossings with Diffusional Kurtosis , 2015, MICCAI.

[288]  Joseph A. Helpern,et al.  Kurtosis analysis of neural diffusion organization , 2015, NeuroImage.

[289]  Carl-Fredrik Westin,et al.  Estimating Diffusion Propagator and Its Moments Using Directional Radial Basis Functions , 2015, IEEE Transactions on Medical Imaging.

[290]  Rachid Deriche,et al.  Exploiting the Phase in Diffusion MRI for Microstructure Recovery: Towards Axonal Tortuosity via Asymmetric Diffusion Processes , 2015, MICCAI.

[291]  S. Aja‐Fernández,et al.  Impact of MR Acquisition Parameters on DTI Scalar Indexes: A Tractography Based Approach , 2015, PloS one.

[292]  Karsten Tabelow,et al.  Local estimation of the noise level in MRI using structural adaptation , 2014, Medical Image Anal..

[293]  Peter J Basser,et al.  Detecting compartmental non‐Gaussian diffusion with symmetrized double‐PFG MRI , 2015, NMR in biomedicine.

[294]  Feng Huang,et al.  Self-feeding MUSE: A robust method for high resolution diffusion imaging using interleaved EPI , 2015, NeuroImage.

[295]  Carl-Fredrik Westin,et al.  Quantification of microscopic diffusion anisotropy disentangles effects of orientation dispersion from microstructure: Applications in healthy volunteers and in brain tumors , 2015, NeuroImage.

[296]  Zhengyi Yang,et al.  Parametric Probability Distribution Functions for Axon Diameters of Corpus Callosum , 2016, Front. Neuroanat..

[297]  F. Kruggel,et al.  Quantitative mapping of the per‐axon diffusion coefficients in brain white matter , 2015, Magnetic resonance in medicine.

[298]  Carl-Fredrik Westin,et al.  A joint compressed-sensing and super-resolution approach for very high-resolution diffusion imaging , 2016, NeuroImage.

[299]  Carl-Fredrik Westin,et al.  Q-space trajectory imaging for multidimensional diffusion MRI of the human brain , 2016, NeuroImage.

[300]  Rachid Deriche,et al.  MAPL: Tissue microstructure estimation using Laplacian-regularized MAP-MRI and its application to HCP data , 2016, NeuroImage.

[301]  Rachid Deriche,et al.  Noise Floor Removal via Phase Correction of Complex Diffusion-Weighted Images: Influence on DTI and q-Space Metrics , 2016, MICCAI 2016.

[302]  Peter Savadjiev,et al.  Inter-site and inter-scanner diffusion MRI data harmonization , 2016, NeuroImage.

[303]  Maxime Descoteaux,et al.  Non Local Spatial and Angular Matching : Enabling higher spatial resolution diffusion MRI datasets through adaptive denoising , 2016, Medical Image Anal..

[304]  Philippe Hantraye,et al.  New paradigm to assess brain cell morphology by diffusion-weighted MR spectroscopy in vivo , 2016, Proceedings of the National Academy of Sciences.

[305]  Jan Sijbers,et al.  Denoising of diffusion MRI using random matrix theory , 2016, NeuroImage.

[306]  Hui Zhang,et al.  PGSE, OGSE, and sensitivity to axon diameter in diffusion MRI: Insight from a simulation study , 2015, Magnetic resonance in medicine.

[307]  Santiago Aja-Fernández,et al.  Statistical Analysis of Noise in MRI , 2016, Springer International Publishing.

[308]  Carl-Fredrik Westin,et al.  The link between diffusion MRI and tumor heterogeneity: Mapping cell eccentricity and density by diffusional variance decomposition (DIVIDE) , 2016, NeuroImage.

[309]  Santiago Aja-Fernández,et al.  Variance stabilization of noncentral-chi data: Application to noise estimation in MRI , 2016, 2016 IEEE 13th International Symposium on Biomedical Imaging (ISBI).

[310]  Jelle Veraart,et al.  Diffusion MRI noise mapping using random matrix theory , 2016, Magnetic resonance in medicine.

[311]  Tim B. Dyrby,et al.  The Diameters of Cortical Axons and Their Relevance to Neural Computing , 2016 .

[312]  Jessica A. Turner,et al.  Multi-site study of diffusion metric variability: characterizing the effects of site, vendor, field strength, and echo time using the histogram distance , 2016, SPIE Medical Imaging.

[313]  Maiken Nedergaard,et al.  Changes in the composition of brain interstitial ions control the sleep-wake cycle , 2016, Science.

[314]  Elna-Marie Larsson,et al.  Extension of diffuse low-grade gliomas beyond radiological borders as shown by the coregistration of histopathological and magnetic resonance imaging data. , 2016, Journal of neurosurgery.

[315]  J. Veraart,et al.  Mapping orientational and microstructural metrics of neuronal integrity with in vivo diffusion MRI , 2016, 1609.09144.

[316]  Daniel C. Alexander,et al.  Multi-compartment microscopic diffusion imaging , 2016, NeuroImage.

[317]  A. Schwartzman,et al.  Characterizing brain tissue by assessment of the distribution of anisotropic microstructural environments in diffusion‐compartment imaging (DIAMOND) , 2016, Magnetic resonance in medicine.

[318]  M. Esposito,et al.  Quality assurance multicenter comparison of different MR scanners for quantitative diffusion‐weighted imaging , 2016, Journal of magnetic resonance imaging : JMRI.

[319]  Mauro Zucchelli,et al.  The confinement tensor model improves characterization of diffusion-weighted magnetic resonance data with varied timing parameters , 2016, 2016 IEEE 13th International Symposium on Biomedical Imaging (ISBI).

[320]  T. Georgiou,et al.  Microstructure Imaging of Crossing (MIX) White Matter Fibers from diffusion MRI , 2016, Scientific Reports.

[321]  Daniel C. Alexander,et al.  Bingham–NODDI: Mapping anisotropic orientation dispersion of neurites using diffusion MRI , 2016, NeuroImage.

[322]  Carlo Pierpaoli,et al.  Clinical feasibility of using mean apparent propagator (MAP) MRI to characterize brain tissue microstructure , 2016, NeuroImage.

[323]  Andrada Ianuş,et al.  Model‐based estimation of microscopic anisotropy using diffusion MRI: a simulation study , 2016, NMR in biomedicine.

[324]  J. Veraart,et al.  Degeneracy in model parameter estimation for multi‐compartmental diffusion in neuronal tissue , 2016, NMR in biomedicine.

[325]  Zhengyi Yang,et al.  Towards higher sensitivity and stability of axon diameter estimation with diffusion‐weighted MRI , 2016, NMR in biomedicine.

[326]  Carl-Fredrik Westin,et al.  NMR signal for particles diffusing under potentials: From path integrals and numerical methods to a model of diffusion anisotropy. , 2016, Physical review. E.

[327]  A. Kaindl,et al.  Golgi-Cox Staining Step by Step , 2016, Front. Neuroanat..

[328]  Jelle Veraart,et al.  Gibbs ringing in diffusion MRI , 2016, Magnetic resonance in medicine.

[329]  Daniel Topgaard,et al.  Director orientations in lyotropic liquid crystals: diffusion MRI mapping of the Saupe order tensor. , 2016, Physical chemistry chemical physics : PCCP.

[330]  Derek K. Jones,et al.  Including diffusion time dependence in the extra-axonal space improves in vivo estimates of axonal diameter and density in human white matter , 2016, NeuroImage.

[331]  P. Mitra,et al.  Conventions and nomenclature for double diffusion encoding NMR and MRI , 2016, Magnetic resonance in medicine.

[332]  Chuyang Ye,et al.  Tissue microstructure estimation using a deep network inspired by a dictionary‐based framework , 2017, Medical Image Anal..

[333]  Markus Nilsson,et al.  Neurite density imaging versus imaging of microscopic anisotropy in diffusion MRI: A model comparison using spherical tensor encoding , 2017, NeuroImage.

[334]  Daniel C. Alexander,et al.  Machine learning based compartment models with permeability for white matter microstructure imaging , 2017, NeuroImage.

[335]  Ken E Sakaie,et al.  Quantitative quality assurance in a multicenter HARDI clinical trial at 3T. , 2017, Magnetic resonance imaging.

[336]  Jean-Marie Bonny,et al.  Noise Estimation and Reduction in Magnetic Resonance Imaging Using a New Multispectral Nonlocal Maximum-likelihood Filter , 2017, IEEE Transactions on Medical Imaging.

[337]  Carl-Fredrik Westin,et al.  Effective Potential for Magnetic Resonance Measurements of Restricted Diffusion , 2017, Front. Phys..

[338]  Daniel C. Alexander,et al.  Abundance of cell bodies can explain the stick model ’ s failure in grey matter at high b-value , 2017 .

[339]  Timothy Edward John Behrens,et al.  Improved tractography using asymmetric fibre orientation distributions , 2017, NeuroImage.

[340]  Brian Hansen,et al.  Precision and accuracy of diffusion kurtosis estimation and the influence of b‐value selection , 2017, NMR in biomedicine.

[341]  Joseph A. Helpern,et al.  Dependence on b-value of the direction-averaged diffusion-weighted imaging signal in brain. , 2017, Magnetic resonance imaging.

[342]  Bente Pakkenberg,et al.  Neocortical Neuronal Loss in Patients with Multiple System Atrophy: A Stereological Study , 2015, Cerebral cortex.

[343]  Rainer Goebel,et al.  Robust and fast nonlinear optimization of diffusion MRI microstructure models , 2017, NeuroImage.

[344]  Rachid Deriche,et al.  Diffusion MRI microstructure models with in vivo human brain Connectom data: results from a multi-group comparison , 2016, 1604.07287.

[345]  Santiago Aja-Fernández,et al.  Non-Stationary Rician Noise Estimation in Parallel MRI Using a Single Image: A Variance-Stabilizing Approach , 2017, IEEE Transactions on Pattern Analysis and Machine Intelligence.

[346]  Mark Jenkinson,et al.  Evaluating fibre orientation dispersion in white matter: Comparison of diffusion MRI, histology and polarized light imaging , 2017, NeuroImage.

[347]  Daniel C Alexander,et al.  Double oscillating diffusion encoding and sensitivity to microscopic anisotropy , 2016, Magnetic resonance in medicine.

[348]  Carl-Fredrik Westin,et al.  Precise Inference and Characterization of Structural Organization (PICASO) of tissue from molecular diffusion , 2017, NeuroImage.

[349]  Carl-Fredrik Westin,et al.  Resolution limit of cylinder diameter estimation by diffusion MRI: The impact of gradient waveform and orientation dispersion , 2017, NMR in biomedicine.

[350]  Daniel Topgaard,et al.  Multidimensional diffusion MRI. , 2017, Journal of magnetic resonance.

[351]  Carl-Fredrik Westin,et al.  New insights about time‐varying diffusivity and its estimation from diffusion MRI , 2017, Magnetic resonance in medicine.

[352]  Bennett A. Landman,et al.  Effects of b-value and number of gradient directions on diffusion MRI measures obtained with Q-ball imaging , 2017, Medical Imaging.

[353]  Carlo Pierpaoli,et al.  Analysis of the effects of noise, DWI sampling, and value of assumed parameters in diffusion MRI models , 2017, Magnetic resonance in medicine.

[354]  Giampaolo Ferraioli,et al.  Bayesian MRI denoising in complex domain. , 2017, Magnetic resonance imaging.

[355]  H. Chugani,et al.  Minimal number of gradient directions for robust measurement of spherical mean diffusion weighted signal. , 2018, Magnetic resonance imaging.

[356]  Carl-Fredrik Westin,et al.  Cumulant expansions for measuring water exchange using diffusion MRI. , 2018, The Journal of chemical physics.

[357]  Marco Palombo,et al.  Can we detect the effect of spines and leaflets on the diffusion of brain intracellular metabolites? , 2017, NeuroImage.

[358]  Prasanna Parvathaneni,et al.  Empirical reproducibility, sensitivity, and optimization of acquisition protocol, for Neurite Orientation Dispersion and Density Imaging using AMICO. , 2018, Magnetic resonance imaging.

[359]  Santiago Aja-Fernández,et al.  Bias correction for non-stationary noise filtering in MRI , 2018, 2018 IEEE 15th International Symposium on Biomedical Imaging (ISBI 2018).

[360]  Jelle Veraart,et al.  TE dependent Diffusion Imaging (TEdDI) distinguishes between compartmental T 2 relaxation times , 2017, NeuroImage.

[361]  Jelle Veraart,et al.  Rotationally-invariant mapping of scalar and orientational metrics of neuronal microstructure with diffusion MRI , 2018, NeuroImage.

[362]  Maryam Afzali,et al.  MicroLearn : Framework for machine learning , reconstruction , optimization and microstructure modeling , 2018 .

[363]  Alejandro F. Frangi,et al.  Double Diffusion Encoding Prevents Degeneracy in Parameter Estimation of Biophysical Models in Diffusion MRI , 2018, 1809.05059.

[364]  Jennifer A McNab,et al.  Double diffusion encoding MRI for the clinic , 2018, Magnetic resonance in medicine.

[365]  G. Johnson,et al.  Bias in MRI Measurements of Apparent Diffusion Coefficient and Kurtosis: Implications for Choice of Maximum Diffusion Encoding , 2018, Applied Magnetic Resonance.

[366]  Allen W. Song,et al.  Simultaneous and inherent correction of B0 and eddy-current induced distortions in high-resolution diffusion MRI using reversed polarity gradients and multiplexed sensitivity encoding (RPG-MUSE) , 2018, NeuroImage.

[367]  E. Özarslan,et al.  Asymmetric Orientation Distribution Functions (AODFs) revealing intravoxel geometry in diffusion MRI. , 2018, Magnetic resonance imaging.

[368]  Santiago Aja-Fernández,et al.  Scalar diffusion-MRI measures invariant to acquisition parameters: A first step towards imaging biomarkers. , 2018, Magnetic resonance imaging.

[369]  Fang-Cheng Yeh,et al.  Tractography for Surgical Neuro-Oncology Planning: Towards a Gold Standard , 2018, Neurotherapeutics.

[370]  Myung-Ho In,et al.  Reduced acoustic noise in diffusion tensor imaging on a compact MRI system , 2018, Magnetic resonance in medicine.

[371]  Daniel C. Alexander,et al.  Accurate estimation of microscopic diffusion anisotropy and its time dependence in the mouse brain , 2017, NeuroImage.

[372]  Amitesh Dubey,et al.  Role of Diffusion Tensor Imaging in Brain Tumor Surgery , 2018, Asian journal of neurosurgery.

[373]  C. Laymon.  A. study , 2018, Predication and Ontology.

[374]  Dmitry S. Novikov,et al.  What dominates the time dependence of diffusion transverse to axons: Intra- or extra-axonal water? , 2017, NeuroImage.

[375]  Els Fieremans,et al.  Physical and numerical phantoms for the validation of brain microstructural MRI: A cookbook , 2018, NeuroImage.

[376]  Carl-Fredrik Westin,et al.  Influence of the Size and Curvedness of Neural Projections on the Orientationally Averaged Diffusion MR Signal , 2018, Front. Phys..

[377]  Camilo Bermudez,et al.  Inter-Scanner Harmonization of High Angular Resolution DW-MRI using Null Space Deep Learning , 2018, Lecture notes-monograph series.

[378]  Santiago Aja-Fernández,et al.  Micro-structure diffusion scalar measures from reduced MRI acquisitions , 2019, bioRxiv.

[379]  Paul M. Thompson,et al.  Challenges and Opportunities in dMRI Data Harmonization , 2019, Computational Diffusion MRI.

[380]  Dinggang Shen,et al.  Noise reduction in diffusion MRI using non‐local self‐similar information in joint Symbol space , 2018, Medical Image Anal..

[381]  Derek K. Jones,et al.  Estimating axon conduction velocity in vivo from microstructural MRI , 2019, NeuroImage.

[382]  G J M Parker,et al.  Multidimensional diffusion MRI with spectrally modulated gradients reveals unprecedented microstructural detail , 2019, Scientific Reports.

[383]  Pew-Thian Yap,et al.  Multi-Site Harmonization of Diffusion MRI Data via Method of Moments , 2019, IEEE Transactions on Medical Imaging.

[384]  C. Westin,et al.  Searching for the neurite density with diffusion MRI: Challenges for biophysical modeling , 2018, Human brain mapping.

[385]  Fitting IVIM with Variable Projection and Simplicial Optimization , 2019, ArXiv.

[386]  Matteo Bastiani,et al.  Joint modelling of diffusion MRI and microscopy , 2019, NeuroImage.

[387]  Pew-Thian Yap,et al.  Noise reduction in diffusion MRI using non-local self-similar information in joint x-q space , 2018, Medical Image Anal..

[388]  Joseph V. Hajnal,et al.  Complex diffusion-weighted image estimation via matrix recovery under general noise models , 2018, NeuroImage.

[389]  Hui Zhang,et al.  Imaging brain microstructure with diffusion MRI: practicality and applications , 2019, NMR in biomedicine.

[390]  Andrew Zalesky,et al.  Building connectomes using diffusion MRI: why, how and but , 2017, NMR in biomedicine.

[391]  Santiago Aja-Fernández,et al.  Determination of optimized set of b-values for Apparent Diffusion Coefficient mapping in liver Diffusion-Weighted MRI. , 2019, Journal of magnetic resonance.

[392]  Markus Nilsson,et al.  Time-dependent diffusion in undulating structures: Impact on axon diameter estimation , 2019, 1903.04536.

[393]  Essa Yacoub,et al.  Triple diffusion encoding MRI predicts intra‐axonal and extra‐axonal diffusion tensors in white matter , 2019, Magnetic resonance in medicine.

[394]  Santiago Aja-Fernández,et al.  Return-to-Axis Probability Calculation from Single-Shell Acquisitions , 2019, Computational Diffusion MRI.

[395]  Alejandro F. Frangi,et al.  Resolving degeneracy in diffusion MRI biophysical model parameter estimation using double diffusion encoding , 2018, Magnetic resonance in medicine.

[396]  Karla L Miller,et al.  Ex vivo diffusion MRI of the human brain: Technical challenges and recent advances , 2018, NMR in biomedicine.

[397]  Camilo Bermudez,et al.  Harmonizing 1.5T/3T diffusion weighted MRI through development of deep learning stabilized microarchitecture estimators , 2019, Medical Imaging: Image Processing.

[398]  Yogesh Rathi,et al.  Retrospective harmonization of multi-site diffusion MRI data acquired with different acquisition parameters , 2019, NeuroImage.

[399]  Kim-Han Thung,et al.  Characterizing Non-Gaussian Diffusion in Heterogeneously Oriented Tissue Microenvironments , 2019, MICCAI.

[400]  Yong Zhang,et al.  Denoising of Diffusion MRI Data via Graph Framelet Matching in x-q Space , 2019, IEEE Transactions on Medical Imaging.

[401]  V. Kiselev,et al.  Quantifying brain microstructure with diffusion MRI: Theory and parameter estimation , 2016, NMR in biomedicine.

[402]  Chuyang Ye,et al.  A deep network for tissue microstructure estimation using modified LSTM units , 2019, Medical Image Anal..

[403]  Jelle Veraart,et al.  On the scaling behavior of water diffusion in human brain white matter , 2019, NeuroImage.

[404]  Santiago Aja-Fernández,et al.  Single-Shell Return-to-the-Origin Probability Diffusion Mri Measure Under a Non-Stationary Rician Distributed Noise , 2019, 2019 IEEE 16th International Symposium on Biomedical Imaging (ISBI 2019).

[405]  Tom Dela Haije,et al.  Enforcing necessary non-negativity constraints for common diffusion MRI models using sum of squares programming , 2019, NeuroImage.

[406]  Carl-Fredrik Westin,et al.  Orientationally-averaged diffusion-attenuated magnetic resonance signal for locally-anisotropic diffusion , 2018, Scientific Reports.

[407]  M. Reisert,et al.  A unique analytical solution of the white matter standard model using linear and planar encodings , 2018, Magnetic resonance in medicine.

[408]  Kim-Han Thung,et al.  Probing Tissue Microarchitecture of the Baby Brain via Spherical Mean Spectrum Imaging , 2019, IEEE Transactions on Medical Imaging.

[409]  Dinggang Shen,et al.  Mitigating Gyral Bias in Cortical Tractography via Asymmetric Fiber Orientation Distributions , 2019, Medical Image Anal..

[410]  Rachid Deriche,et al.  Analytical and fast Fiber Orientation Distribution reconstruction in 3D-Polarized Light Imaging , 2020, Medical Image Anal..

[411]  Hu Cheng,et al.  Segmentation of the brain using direction-averaged signal of DWI images. , 2020, Magnetic resonance imaging.

[412]  Jeny Rajan,et al.  An improved nonlocal maximum likelihood estimation method for denoising magnetic resonance images with spatially varying noise levels , 2018, Pattern Recognit. Lett..

[413]  Chengru Song,et al.  Mean apparent propagator-MRI: A new diffusion model which improves temporal lobe epilepsy lateralization. , 2020, European journal of radiology.

[414]  Dmitry S. Novikov,et al.  The impact of realistic axonal shape on axon diameter estimation using diffusion MRI , 2020, NeuroImage.

[415]  Derek K. Jones,et al.  Noninvasive quantification of axon radii using diffusion MRI , 2020, eLife.

[416]  Santiago Aja-Fernández,et al.  Micro-structure diffusion scalar measures from reduced MRI acquisitions , 2020, PloS one.

[417]  Derek K. Jones,et al.  Direction‐averaged diffusion‐weighted MRI signal using different axisymmetric B‐tensor encoding schemes , 2020, Magnetic resonance in medicine.

[418]  Daniel C. Alexander,et al.  SANDI: A compartment-based model for non-invasive apparent soma and neurite imaging by diffusion MRI , 2019, NeuroImage.

[419]  C. Sexton,et al.  Diffusion MRI , 2020, The Wiley Encyclopedia of Health Psychology.

[420]  Matteo Frigo,et al.  Multi Tissue Modelling of Diffusion MRI Signal Reveals Volume Fraction Bias , 2020, 2020 IEEE 17th International Symposium on Biomedical Imaging (ISBI).

[421]  C. Westin,et al.  Towards unconstrained compartment modeling in white matter using diffusion‐relaxation MRI with tensor‐valued diffusion encoding , 2020, Magnetic resonance in medicine.

[422]  C. Westin,et al.  Magnetic Resonance Assessment of Effective Confinement Anisotropy with Orientationally-Averaged Single and Double Diffusion Encoding , 2019, Mathematics and Visualization.