Chromatin remodelling beyond transcription: the INO80 and SWR1 complexes

[1]  M. Osley,et al.  INO80-dependent chromatin remodeling regulates early and late stages of mitotic homologous recombination. , 2009, DNA repair.

[2]  S. Jentsch,et al.  Chromosome-wide Rad51 spreading and SUMO-H2A.Z-dependent chromosome fixation in response to a persistent DNA double-strand break. , 2009, Molecular cell.

[3]  G. Crabtree,et al.  Understanding the Words of Chromatin Regulation , 2009, Cell.

[4]  Paul Tempst,et al.  WSTF regulates the function of H2A.X via a novel tyrosine kinase activity , 2008, Nature.

[5]  Y. Rong.  Loss of the Histone Variant H2A.Z Restores Capping to Checkpoint-Defective Telomeres in Drosophila , 2008, Genetics.

[6]  Grant W. Brown,et al.  Functional Targeting of DNA Damage to a Nuclear Pore-Associated SUMO-Dependent Ubiquitin Ligase , 2008, Science.

[7]  Eleni P. Mimitou,et al.  Sae2, Exo1 and Sgs1 collaborate in DNA double-strand break processing , 2008, Nature.

[8]  M. Washburn,et al.  Distinct modes of regulation of the Uch37 deubiquitinating enzyme in the proteasome and in the Ino80 chromatin-remodeling complex. , 2008, Molecular cell.

[9]  Jeffrey G. Linger,et al.  Acetylated Lysine 56 on Histone H3 Drives Chromatin Assembly after Repair and Signals for the Completion of Repair , 2008, Cell.

[10]  H. Szerlong,et al.  The HSA domain binds nuclear actin-related proteins to regulate chromatin-remodeling ATPases , 2008, Nature Structural &Molecular Biology.

[11]  T. Tsukiyama,et al.  ATP-dependent chromatin remodeling shapes the DNA replication landscape , 2008, Nature Structural &Molecular Biology.

[12]  Kathryn A. O’Donnell,et al.  Toward a comprehensive temperature-sensitive mutant repository of the essential genes of Saccharomyces cerevisiae. , 2008, Molecular cell.

[13]  S. Gasser,et al.  Ino80 Chromatin Remodeling Complex Promotes Recovery of Stalled Replication Forks , 2008, Current Biology.

[14]  Marco Foiani,et al.  Regulation of DNA repair throughout the cell cycle , 2008, Nature Reviews Molecular Cell Biology.

[15]  Vikki M. Weake,et al.  Histone ubiquitination: triggering gene activity. , 2008, Molecular cell.

[16]  C. Peterson,et al.  The Ino80 chromatin-remodeling enzyme regulates replisome function and stability , 2008, Nature Structural &Molecular Biology.

[17]  B. Gómez-González,et al.  Genome instability: a mechanistic view of its causes and consequences , 2008, Nature Reviews Genetics.

[18]  Anindya Dutta,et al.  Human Rvb1/Tip49 Is Required for the Histone Acetyltransferase Activity of Tip60/NuA4 and for the Downregulation of Phosphorylation on H2AX after DNA Damage , 2008, Molecular and Cellular Biology.

[19]  Mihaela E. Sardiu,et al.  Probabilistic assembly of human protein interaction networks from label-free quantitative proteomics , 2008, Proceedings of the National Academy of Sciences.

[20]  Yang Shi,et al.  A YY1–INO80 complex regulates genomic stability through homologous recombination–based repair , 2007, Nature Structural &Molecular Biology.

[21]  I. Graef,et al.  Regulation of Dendritic Development by Neuron-Specific Chromatin Remodeling Complexes , 2007, Neuron.

[22]  S. Gasser,et al.  Distinct roles for SWR1 and INO80 chromatin remodeling complexes at chromosomal double‐strand breaks , 2007, The EMBO journal.

[23]  J. Chrivia,et al.  The Chromatin Remodeling Protein, SRCAP, Is Critical for Deposition of the Histone Variant H2A.Z at Promoters* , 2007, Journal of Biological Chemistry.

[24]  John Lough,et al.  Tip60 is a haplo-insufficient tumour suppressor required for an oncogene-induced DNA damage response , 2007, Nature.

[25]  M. Washburn,et al.  YY1 functions with INO80 to activate transcription , 2007, Nature Structural &Molecular Biology.

[26]  Sean R. Collins,et al.  Mec1/Tel1 Phosphorylation of the INO80 Chromatin Remodeling Complex Influences DNA Damage Checkpoint Responses , 2007, Cell.

[27]  Jung-Ae Kim,et al.  Heterochromatin is refractory to γ-H2AX modification in yeast and mammals , 2007, The Journal of cell biology.

[28]  Ashby J. Morrison,et al.  Regulation of Telomere Structure and Functions by Subunits of the INO80 Chromatin Remodeling Complex , 2007, Molecular and Cellular Biology.

[29]  H. Ogiwara,et al.  The INO80 Chromatin Remodeling Complex Functions in Sister Chromatid Cohesion , 2007, Cell cycle.

[30]  H. Ogiwara,et al.  Actin-related protein Arp4 functions in kinetochore assembly , 2007, Nucleic acids research.

[31]  H. Ogiwara,et al.  The INO80 complex is required for damage-induced recombination. , 2007, Biochemical and biophysical research communications.

[32]  Grant W. Brown,et al.  Functional dissection of protein complexes involved in yeast chromosome biology using a genetic interaction map , 2007, Nature.

[33]  P. Ridgway,et al.  H2A.Z contributes to the unique 3D structure of the centromere , 2007, Proceedings of the National Academy of Sciences.

[34]  C. Topp,et al.  Repression of Flowering in Arabidopsis Requires Activation of FLOWERING LOCUS C Expression by the Histone Variant H2A.Z[W][OA] , 2007, The Plant Cell Online.

[35]  Ashby J. Morrison,et al.  Chromatin modifications in DNA repair. , 2006, Results and problems in cell differentiation.

[36]  R. Conaway,et al.  Purification and assay of the human INO80 and SRCAP chromatin remodeling complexes. , 2006, Methods.

[37]  Lara K. Goudsouzian,et al.  S. cerevisiae Tel1p and Mre11p are required for normal levels of Est1p and Est2p telomere association. , 2006, Molecular cell.

[38]  James E Haber,et al.  Surviving the breakup: the DNA damage checkpoint. , 2006, Annual review of genetics.

[39]  C. Peterson,et al.  Interplay between Ino80 and Swr1 chromatin remodeling enzymes regulates cell cycle checkpoint adaptation in response to DNA damage. , 2006, Genes & development.

[40]  Malgorzata Schelder,et al.  A Polycomb group protein complex with sequence-specific DNA-binding and selective methyl-lysine-binding activities. , 2006, Genes & development.

[41]  J. York.  Regulation of nuclear processes by inositol polyphosphates. , 2006, Biochimica et biophysica acta.

[42]  M. Washburn,et al.  Purification of a human SRCAP complex that remodels chromatin by incorporating the histone variant H2A.Z into nucleosomes. , 2006, Biochemistry.

[43]  J. Lieberman,et al.  A phosphatase complex that dephosphorylates γH2AX regulates DNA damage checkpoint recovery , 2006, Nature.

[44]  O. Aparicio,et al.  H2A.Z Functions To Regulate Progression through the Cell Cycle , 2006, Molecular and Cellular Biology.

[45]  Wei-Hua Wu,et al.  Swc2 is a widely conserved H2AZ-binding module essential for ATP-dependent histone exchange , 2005, Nature Structural &Molecular Biology.

[46]  Michael K. Coleman,et al.  A Mammalian Chromatin Remodeling Complex with Similarities to the Yeast INO80 Complex* , 2005, Journal of Biological Chemistry.

[47]  M. Osley,et al.  Chromatin remodelling at a DNA double-strand break site in Saccharomyces cerevisiae , 2005, Nature.

[48]  A. Tong,et al.  Systematic yeast synthetic lethal and synthetic dosage lethal screens identify genes required for chromosome segregation. , 2005, Proceedings of the National Academy of Sciences of the United States of America.

[49]  P. Pasero,et al.  Mrc1 and Tof1 promote replication fork progression and recovery independently of Rad53. , 2005, Molecular cell.

[50]  D. Durocher,et al.  Saccharomyces cerevisiae Rad9 Acts as a Mec1 Adaptor to Allow Rad53 Activation , 2005, Current Biology.

[51]  David Hawke,et al.  A role for cell-cycle-regulated histone H3 lysine 56 acetylation in the DNA damage response , 2005, Nature.

[52]  R. Shiekhattar,et al.  Cell cycle regulation of chromatin at an origin of DNA replication , 2005, The EMBO journal.

[53]  A. Raap,et al.  Cancer-associated mutations in chromatin remodeler hSNF5 promote chromosomal instability by compromising the mitotic checkpoint. , 2005, Genes & development.

[54]  A. Matsuura,et al.  Late S phase-specific recruitment of Mre11 complex triggers hierarchical assembly of telomere replication proteins in Saccharomyces cerevisiae. , 2005, Molecular cell.

[55]  P. Pasero,et al.  ArticleMrc 1 and Tof 1 Promote Replication Fork Progression and Recovery Independently of Rad 53 , 2005 .

[56]  T. Thatcher,et al.  Phylogenetic analysis of the core histones H 2 A , H 2 B , H 3 , and H 4 , 2005 .

[57]  V. Corces,et al.  The role of histone H2Av variant replacement and histone H4 acetylation in the establishment of Drosophila heterochromatin. , 2005, Genes & development.

[58]  K. Shirahige,et al.  Postreplicative recruitment of cohesin to double-strand breaks is required for DNA repair. , 2004, Molecular cell.

[59]  S. Jackson,et al.  Binding of chromatin-modifying activities to phosphorylated histone H2A at DNA damage sites. , 2004, Molecular cell.

[60]  Michael Lichten,et al.  DNA damage response pathway uses histone modification to assemble a double-strand break-specific cohesin domain. , 2004, Molecular cell.

[61]  John R Yates,et al.  Acetylation by Tip60 Is Required for Selective Histone Variant Exchange at DNA Lesions , 2004, Science.

[62]  N. Krogan,et al.  INO80 and γ-H2AX Interaction Links ATP-Dependent Chromatin Remodeling to DNA Damage Repair , 2004, Cell.

[63]  Barbara Hohn,et al.  Recruitment of the INO80 Complex by H2A Phosphorylation Links ATP-Dependent Chromatin Remodeling with DNA Double-Strand Break Repair , 2004, Cell.

[64]  K. Sugimoto,et al.  Requirement of the Mre11 Complex and Exonuclease 1 for Activation of the Mec1 Signaling Pathway , 2004, Molecular and Cellular Biology.

[65]  G. Benvenuto,et al.  The INO80 protein controls homologous recombination in Arabidopsis thaliana. , 2004, Molecular cell.

[66]  R. Rothstein,et al.  Choreography of the DNA Damage Response Spatiotemporal Relationships among Checkpoint and Repair Proteins , 2004, Cell.

[67]  T. Hughes,et al.  Regulation of chromosome stability by the histone H2A variant Htz1, the Swr1 chromatin remodeling complex, and the histone acetyltransferase NuA4. , 2004, Proceedings of the National Academy of Sciences of the United States of America.

[68]  S. Jackson,et al.  Functional links between telomeres and proteins of the DNA-damage response. , 2004, Genes & development.

[69]  B. Calvi,et al.  Chromatin regulates origin activity in Drosophila follicle cells , 2004, Nature.

[70]  P. Russell,et al.  Histone H2A Phosphorylation Controls Crb2 Recruitment at DNA Breaks, Maintains Checkpoint Arrest, and Influences DNA Repair in Fission Yeast , 2004, Molecular and Cellular Biology.

[71]  D. Tremethick,et al.  RNA interference demonstrates a novel role for H2A.Z in chromosome segregation , 2004, Nature Structural &Molecular Biology.

[72]  K. Myung,et al.  Mutator genes for suppression of gross chromosomal rearrangements identified by a genome-wide screening in Saccharomyces cerevisiae , 2004, Proceedings of the National Academy of Sciences of the United States of America.

[73]  K. Shirahige,et al.  Reciprocal association of the budding yeast ATM-related proteins Tel1 and Mec1 with telomeres in vivo. , 2004, Molecular cell.

[74]  Andrew J Link,et al.  A Protein Complex Containing the Conserved Swi2/Snf2-Related ATPase Swr1p Deposits Histone Variant H2A.Z into Euchromatin , 2004, PLoS biology.

[75]  Wei-Hua Wu,et al.  ATP-Driven Exchange of Histone H2AZ Variant Catalyzed by SWR1 Chromatin Remodeling Complex , 2004, Science.

[76]  Huiming Ding,et al.  A Snf2 family ATPase complex required for recruitment of the histone H2A variant Htz1. , 2003, Molecular cell.

[77]  T. Lange,et al.  DNA Damage Foci at Dysfunctional Telomeres , 2003, Current Biology.

[78]  Katsuhiko Shirahige,et al.  S-phase checkpoint proteins Tof1 and Mrc1 form a stable replication-pausing complex , 2003, Nature.

[79]  T. Ried,et al.  H2AX Haploinsufficiency Modifies Genomic Stability and Tumor Susceptibility , 2003, Cell.

[80]  F. Alt,et al.  Histone H2AX A Dosage-Dependent Suppressor of Oncogenic Translocations and Tumors , 2003, Cell.

[81]  Carl Wu,et al.  Involvement of actin-related proteins in ATP-dependent chromatin remodeling. , 2003, Molecular cell.

[82]  R. Bonner,et al.  Histone H2AX phosphorylation is dispensable for the initial recognition of DNA breaks , 2003, Nature Cell Biology.

[83]  Stephen J. Elledge,et al.  Sensing DNA Damage Through ATRIP Recognition of RPA-ssDNA Complexes , 2003, Science.

[84]  P. Ridgway,et al.  Pericentric heterochromatin becomes enriched with H2A.Z during early mammalian development , 2003, The EMBO journal.

[85]  Judith A. Goodship,et al.  A splicing mutation affecting expression of ataxia–telangiectasia and Rad3–related protein (ATR) results in Seckel syndrome , 2003, Nature Genetics.

[86]  Y. Shiloh.  ATM and related protein kinases: safeguarding genome integrity , 2003, Nature Reviews Cancer.

[87]  Nevan J. Krogan,et al.  A Snf 2 Family ATPase Complex Required for Recruitment of the Histone H 2 A Variant Htz , 2003 .

[88]  Wei-Hua Wu,et al.  Modulation of ATP-Dependent Chromatin-Remodeling Complexes by Inositol Polyphosphates , 2002, Science.

[89]  E. O’Shea,et al.  Regulation of Chromatin Remodeling by Inositol Polyphosphates , 2002, Science.

[90]  Michael Grunstein,et al.  Histone acetylation regulates the time of replication origin firing. , 2002, Molecular cell.

[91]  K. Luger,et al.  The essential histone variant H2A.Z regulates the equilibrium between different chromatin conformational states , 2002, Nature Structural Biology.

[92]  Junjie Chen,et al.  Histone H2AX Is Phosphorylated in an ATR-dependent Manner in Response to Replicational Stress* , 2001, The Journal of Biological Chemistry.

[93]  Michael M. Murphy,et al.  ATM Phosphorylates Histone H2AX in Response to DNA Double-strand Breaks* , 2001, The Journal of Biological Chemistry.

[94]  C. Gilbert,et al.  Budding yeast Rad9 is an ATP-dependent Rad53 activating machine. , 2001, Molecular cell.

[95]  Stephen P. Jackson,et al.  A role for Saccharomyces cerevisiae histone H2A in DNA repair , 2000, Nature.

[96]  K. Luger,et al.  Crystal structure of a nucleosome core particle containing the variant histone H2A.Z , 2000, Nature Structural Biology.

[97]  Jun Qin,et al.  Involvement of the TIP60 Histone Acetylase Complex in DNA Repair and Apoptosis , 2000, Cell.

[98]  Ali Hamiche,et al.  A chromatin remodelling complex involved in transcription and DNA processing , 2000, Nature.

[99]  V. Yamazaki,et al.  A critical role for histone H2AX in recruitment of repair factors to nuclear foci after DNA damage , 2000, Current Biology.

[100]  S. Baylin,et al.  DNMT1 binds HDAC2 and a new co-repressor, DMAP1, to form a complex at replication foci , 2000, Nature Genetics.

[101]  C. Peterson,et al.  Actin-related proteins (Arps): conformational switches for chromatin-remodeling machines? , 2000, BioEssays : news and reviews in molecular, cellular and developmental biology.

[102]  J. Haber.  Partners and pathwaysrepairing a double-strand break. , 2000, Trends in genetics : TIG.

[103]  F. Winston,et al.  Histone H2A is required for normal centromere function in Saccharomyces cerevisiae , 2000, The EMBO journal.

[104]  Y. Kurokawa,et al.  TIP49b, a New RuvB-like DNA Helicase, Is Included in a Complex Together with Another RuvB-like DNA Helicase, TIP49a* , 1999, The Journal of Biological Chemistry.

[105]  D. Stillman,et al.  The nuclear actin-related protein of Saccharomyces cerevisiae, Act3p/Arp4, interacts with core histones. , 1999, Molecular biology of the cell.

[106]  D. Tremethick,et al.  Regions of variant histone His2AvD required for Drosophila development , 1999, Nature.

[107]  A. Birkmann,et al.  The product of the SNF2/SWI2 paralogue INO80 of Saccharomyces cerevisiae required for efficient expression of various yeast structural genes is part of a high‐molecular‐weight protein complex , 1999, Molecular microbiology.

[108]  Keji Zhao,et al.  Rapid and Phosphoinositol-Dependent Binding of the SWI/SNF-like BAF Complex to Chromatin after T Lymphocyte Receptor Signaling , 1998, Cell.

[109]  Y. L. Lin,et al.  An Eukaryotic RuvB-like Protein (RUVBL1) Essential for Growth* , 1998, The Journal of Biological Chemistry.

[110]  M. Kirschner,et al.  Mitotic inactivation of a human SWI/SNF chromatin remodeling complex. , 1998, Genes & development.

[111]  Olivier Delattre,et al.  Truncating mutations of hSNF5/INI1 in aggressive paediatric cancer , 1998, Nature.

[112]  E. Rogakou,et al.  DNA Double-stranded Breaks Induce Histone H2AX Phosphorylation on Serine 139* , 1998, The Journal of Biological Chemistry.

[113]  M. Muramatsu,et al.  Molecular cloning of a rat 49-kDa TBP-interacting protein (TIP49) that is highly homologous to the bacterial RuvB. , 1997, Biochemical and biophysical research communications.

[114]  M. Lovett,et al.  A single ataxia telangiectasia gene with a product similar to PI-3 kinase. , 1995, Science.

[115]  M. Scott,et al.  Five SWI/SNF gene products are components of a large multisubunit complex required for transcriptional enhancement. , 1994, Proceedings of the National Academy of Sciences of the United States of America.

[116]  B. Cairns,et al.  A multisubunit complex containing the SWI1/ADR6, SWI2/SNF2, SWI3, SNF5, and SNF6 gene products isolated from yeast. , 1994, Proceedings of the National Academy of Sciences of the United States of America.

[117]  T. Thatcher,et al.  Phylogenetic analysis of the core histones H2A, H2B, H3, and H4. , 1994, Nucleic acids research.

[118]  Eugene V. Koonin,et al.  Helicases: amino acid sequence comparisons and structure-function relationships , 1993 .

[119]  S. West,et al.  ATP-dependent branch migration of holliday junctions promoted by the RuvA and RuvB proteins of E. coli , 1992, Cell.

[120]  M. Blumenfeld,et al.  Drosophila nucleosomes contain an unusual histone-like protein. , 1980, Proceedings of the National Academy of Sciences of the United States of America.

[121]  R Holliday,et al.  Molecular aspects of genetic exchange and gene conversion. , 1974, Genetics.