The evolution of isochores
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[1] Howard Ochman,et al. Isochores result from mutation not selection , 1999, Nature.
[2] L. Hurst,et al. The effect of tandem substitutions on the correlation between synonymous and nonsynonymous rates in rodents. , 1999, Genetics.
[3] T. Ikemura,et al. Evident diversity of codon usage patterns of human genes with respect to chromosome banding patterns and chromosome numbers; relation between nucleotide sequence data and cytogenetic data. , 1991, Nucleic acids research.
[4] A. Eyre-Walker,et al. Evidence of selection on silent site base composition in mammals: potential implications for the evolution of isochores and junk DNA. , 1999, Genetics.
[5] J. V. Moran,et al. Initial sequencing and analysis of the human genome. , 2001, Nature.
[6] Peter D. Keightley,et al. High genomic deleterious mutation rates in hominids , 1999, Nature.
[7] L. Hurst,et al. The elevated GC content at exonic third sites is not evidence against neutralist models of isochore evolution. , 2001, Molecular biology and evolution.
[8] W Krone,et al. An isochore transition in the NF1 gene region coincides with a switch in the extent of linkage disequilibrium. , 2000, American journal of human genetics.
[9] M. Meuth,et al. The molecular basis of mutations induced by deoxyribonucleoside triphosphate pool imbalances in mammalian cells. , 1989, Experimental cell research.
[10] A. Eyre-Walker. The role of DNA replication and isochores in generating mutation and silent substitution rate variance in mammals. , 1992, Genetical research.
[11] A. Clark,et al. Local rates of recombination are positively correlated with GC content in the human genome. , 2001, Molecular biology and evolution.
[12] G Bernardi,et al. The mosaic genome of warm-blooded vertebrates. , 1985, Science.
[13] G Bernardi,et al. An approach to the organization of eukaryotic genomes at a macromolecular level. , 1976, Journal of molecular biology.
[14] A. Eyre-Walker. DNA mismatch repair and synonymous codon evolution in mammals. , 1994, Molecular biology and evolution.
[15] M. Meuth,et al. A novel pathway for transversion mutation induced by dCTP misincorporation in a mutator strain of CHO cells , 1989, Molecular and cellular biology.
[16] S. Shabalina,et al. Pattern of selective constraint in C. elegans and C. briggsae genomes. , 1999, Genetical research.
[17] A. R. Merchant,et al. High guanine–cytosine content is not an adaptation to high temperature: a comparative analysis amongst prokaryotes , 2001, Proceedings of the Royal Society of London. Series B: Biological Sciences.
[18] D. Mccormick. Sequence the Human Genome , 1986, Bio/Technology.
[19] D. Mouchiroud,et al. Warm-blooded isochore structure in Nile crocodile and turtle. , 1999, Molecular biology and evolution.
[20] A. Nekrutenko,et al. Densities, length proportions, and other distributional features of repetitive sequences in the human genome estimated from 430 megabases of genomic sequence. , 2000, Gene.
[21] C. Mathews,et al. DNA precursor pools and ribonucleotide reductase activity: distribution between the nucleus and cytoplasm of mammalian cells , 1985, Molecular and cellular biology.
[22] S. Boissinot,et al. Mutation Pattern Variation Among Regions of the Primate Genome , 1997, Journal of Molecular Evolution.
[23] J. Jiricny,et al. Different base/base mispairs are corrected with different efficiencies and specificities in monkey kidney cells , 1988, Cell.
[24] J. Jurka,et al. Sequence patterns indicate an enzymatic involvement in integration of mammalian retroposons. , 1997, Proceedings of the National Academy of Sciences of the United States of America.
[25] International Human Genome Sequencing Consortium. Initial sequencing and analysis of the human genome , 2001, Nature.
[26] P. Keightley,et al. Deleterious mutations and the evolution of sex. , 2000, Science.
[27] M. Meuth,et al. The genetic consequences of DNA precursor pool imbalance: sequence analysis of mutations induced by excess thymidine at the hamster aprt locus. , 1989, Mutation research.
[28] K. J. Fryxell,et al. Cytosine deamination plays a primary role in the evolution of mammalian isochores. , 2000, Molecular biology and evolution.
[29] G Bernardi,et al. An analysis of the bovine genome by Cs2SO4-Ag density gradient centrifugation. , 1973, Journal of molecular biology.
[30] Timothy B. Stockwell,et al. The Sequence of the Human Genome , 2001, Science.
[31] J. Bertram,et al. Changes in ribo- and deoxyribonucleoside triphosphate pools within the cell cycle of a synchronized mouse fibroblast cell line. , 1983, Biochimica et biophysica acta.
[32] Z. Yang,et al. Rates of nucleotide substitution and mammalian nuclear gene evolution. Approximate and maximum-likelihood methods lead to different conclusions. , 2000, Genetics.
[33] T. Nagylaki. Evolution of a finite population under gene conversion. , 1983, Proceedings of the National Academy of Sciences of the United States of America.
[34] Adam Eyre-Walker,et al. Recombination and mammalian genome evolution , 1993, Proceedings of the Royal Society of London. Series B: Biological Sciences.
[35] T Gojobori,et al. Precise switching of DNA replication timing in the GC content transition area in the human major histocompatibility complex , 1997, Molecular and cellular biology.
[36] G. Holmquist,et al. Chromosome bands, their chromatin flavors, and their functional features. , 1992, American journal of human genetics.
[37] J. Filipski,et al. Correlation between molecular clock ticking, codon usage, fidelity of DNA repair, chromosome banding and chromatin compactness in germline cells , 1987, FEBS letters.
[38] G Bernardi,et al. The correlation of protein hydropathy with the base composition of coding sequences. , 1999, Gene.
[39] A. Eyre-Walker,et al. Synonymous codon bias is not caused by mutation bias in G+C-rich genes in humans. , 2001, Molecular biology and evolution.
[40] Wen-Hsiung Li,et al. Mutation rates differ among regions of the mammalian genome , 1989, Nature.
[41] F. Rodier,et al. Chromosome localization-dependent compositional bias of point mutations in Alu repetitive sequences. , 1989, Journal of molecular biology.
[42] G Bernardi,et al. Isochores and the evolutionary genomics of vertebrates. , 2000, Gene.
[43] A. Smit. Interspersed repeats and other mementos of transposable elements in mammalian genomes. , 1999, Current opinion in genetics & development.
[44] N. Galtier,et al. Isochore evolution in mammals: a human-like ancestral structure. , 1998, Genetics.
[45] M. Tomita,et al. Characteristic Sequence Pattern in the 5- to 20-bp Upstream Region of Primate Alu Elements , 2000, Journal of Molecular Evolution.
[46] L. Hurst,et al. Covariation of GC content and the silent site substitution rate in rodents: implications for methodology and for the evolution of isochores. , 2000, Gene.
[47] A. Eyre-Walker,et al. Evidence that both G + C rich and G + C poor isochores are replicated early and late in the cell cycle. , 1992, Nucleic acids research.
[48] Gen Tamiya,et al. Complete sequence and gene map of a human major histocompatibility complex , 1999 .
[49] Elena S. Babaylova,et al. Complete sequence and gene map of a human major histocompatibility complex , 1999, Nature.
[50] G Bernardi,et al. Human coding and noncoding DNA: compositional correlations. , 1996, Molecular phylogenetics and evolution.
[51] Jef D Boeke,et al. Human L1 Retrotransposon Encodes a Conserved Endonuclease Required for Retrotransposition , 1996, Cell.
[52] N. Sueoka. Directional mutation pressure and neutral molecular evolution. , 1988, Proceedings of the National Academy of Sciences of the United States of America.
[53] G Bernardi,et al. An analysis of eukaryotic genomes by density gradient centrifugation. , 1976, Journal of molecular biology.
[54] A. Eyre-Walker. The effect of constraint on the rate of evolution in neutral models with biased mutation. , 1992, Genetics.
[55] J. Lobry,et al. Relationships Between Genomic G+C Content, RNA Secondary Structures, and Optimal Growth Temperature in Prokaryotes , 1997, Journal of Molecular Evolution.
[56] A. Eyre-Walker. Differentiating between selection and mutation bias. , 1997, Genetics.
[57] K. H. Wolfe,et al. Mammalian DNA replication: mutation biases and the mutation rate. , 1991, Journal of theoretical biology.
[58] G. Bernardi,et al. The gene-richest bands of human chromosomes replicate at the onset of the S-phase , 1998, Cytogenetic and Genome Research.