Macromolecular crowding: qualitative and semiquantitative successes, quantitative challenges.

The concept of excluded volume and the theory of effects of excluded volume on the equilibria and rates of macromolecular reactions in fluid media containing high total concentrations of macromolecules ('crowded' media) are summarized. Reports of experimental studies of crowding effects published during the last year are tabulated. Limitations of current excluded volume theory are discussed, and a determination is made of conditions under which this theory may and may not be validly applied. Recently suggested novel approaches to quantitative analysis of crowding phenomena, which may help to overcome some of the limitations of current theory, are summarized.

[1]  Thomas M Truskett,et al.  Is random close packing of spheres well defined? , 2000, Physical review letters.

[2]  Allen P. Minton,et al.  The effect of volume occupancy upon the thermodynamic activity of proteins: some biochemical consequences , 2004, Molecular and Cellular Biochemistry.

[3]  T. Laurent,et al.  ON THE INTERACTION BETWEEN POLYSACCHARIDES AND OTHER MACROMOLECULES. II. THE TRANSPORT OF GLOBULAR PARTICLES THROUGH HYALURONIC ACID SOLUTIONS. , 1963, Biochimica et biophysica acta.

[4]  Adrian H Elcock,et al.  Atomic-level observation of macromolecular crowding effects: Escape of a protein from the GroEL cage , 2003, Proceedings of the National Academy of Sciences of the United States of America.

[5]  R. Ellis,et al.  Macromolecular crowding: an important but neglected aspect of the intracellular environment. , 2001 .

[6]  A. Minton,et al.  The Influence of Macromolecular Crowding and Macromolecular Confinement on Biochemical Reactions in Physiological Media* , 2001, The Journal of Biological Chemistry.

[7]  O. Berg,et al.  The influence of macromolecular crowding on thermodynamic activity: Solubility and dimerization constants for spherical and dumbbell‐shaped molecules in a hard‐sphere mixture , 1990, Biopolymers.

[8]  A. Minton,et al.  Analysis of non-ideal behavior in concentrated hemoglobin solutions. , 1977, Journal of molecular biology.

[9]  S. Takada,et al.  Effects of macromolecular crowding on protein folding and aggregation studied by density functional theory: dynamics. , 2002, Physical review. E, Statistical, nonlinear, and soft matter physics.

[10]  Kiowa S. Bower,et al.  Accelerated α‐synuclein fibrillation in crowded milieu , 2002 .

[11]  Walter Kauzmann,et al.  The Structure and Properties of Water , 1969 .

[12]  A. Minton,et al.  Molecular crowding: analysis of effects of high concentrations of inert cosolutes on biochemical equilibria and rates in terms of volume exclusion. , 1998, Methods in enzymology.

[13]  H. C. Longuet-Higgins,et al.  The statistical thermodynamics of multicomponent systems , 1951, Proceedings of the Royal Society of London. Series A. Mathematical and Physical Sciences.

[14]  R. Ellis Macromolecular crowding : obvious but underappreciated , 2022 .

[15]  A. Minton,et al.  Macromolecular crowding: biochemical, biophysical, and physiological consequences. , 1993, Annual review of biophysics and biomolecular structure.

[16]  Joel L. Lebowitz,et al.  Scaled Particle Theory of Fluid Mixtures , 1965 .

[17]  A. Minton,et al.  Effect of dextran on protein stability and conformation attributed to macromolecular crowding. , 2003, Journal of molecular biology.

[18]  M. Al-Habori,et al.  Macromolecular crowding and its role as intracellular signalling of cell volume regulation. , 2001, The international journal of biochemistry & cell biology.

[19]  A. Minton,et al.  Effects of excluded surface area and adsorbate clustering on surface adsorption of proteins. II. Kinetic models. , 2001, Biophysical journal.

[20]  Kiowa S. Bower,et al.  Accelerated alpha-synuclein fibrillation in crowded milieu. , 2002, FEBS letters.

[21]  A. Minton,et al.  Hidden self‐association of proteins , 1989, Journal of Molecular Recognition.

[22]  P. Lansbury,et al.  Molecular crowding accelerates fibrillization of alpha-synuclein: could an increase in the cytoplasmic protein concentration induce Parkinson's disease? , 2002, Biochemistry.

[23]  W. G. Hoover,et al.  Seventh Virial Coefficients for Hard Spheres and Hard Disks , 1967 .

[24]  K. Strange,et al.  Cellular and Molecular Physiology of Cell Volume Regulation , 1993 .

[25]  T. Kihara Virial Coefficients and Models of Molecules in Gases , 1953 .

[26]  A. Minton A molecular model for the dependence of the osmotic pressure of bovine serum albumin upon concentration and pH. , 1995, Biophysical chemistry.

[27]  K. Luby-Phelps,et al.  Cytoarchitecture and physical properties of cytoplasm: volume, viscosity, diffusion, intracellular surface area. , 2000, International review of cytology.

[28]  A. Minton,et al.  Light scattering of bovine serum albumin solutions: Extension of the hard particle model to allow for electrostatic repulsion , 1982 .

[29]  A. Minton Excluded volume as a determinant of macromolecular structure and reactivity , 1981 .

[30]  A. Minton,et al.  Effect of macromolecular crowding upon the structure and function of an enzyme: glyceraldehyde-3-phosphate dehydrogenase. , 1981, Biochemistry.

[31]  D. Hall On the role of the macromolecular phase transitions in biology in response to change in solution volume or macromolecular composition: action as an entropy buffer. , 2002, Biophysical chemistry.

[32]  Jörg Martin Requirement for GroEL/GroES-dependent protein folding under nonpermissive conditions of macromolecular crowding. , 2002, Biochemistry.

[33]  S. Takada,et al.  Effects of macromolecular crowding on protein folding and aggregation studied by density functional theory: statics. , 2002, Physical review. E, Statistical, nonlinear, and soft matter physics.

[34]  Charles Tanford,et al.  Physical Chemistry of Macromolecules , 1961 .

[35]  A. Minton Implications of macromolecular crowding for protein assembly. , 2000, Current opinion in structural biology.

[36]  J. Calvin Giddings,et al.  Statistical theory for the equilibrium distribution of rigid molecules in inert porous networks. Exclusion chromatography , 1968 .

[37]  A. Fulton,et al.  How crowded is the cytoplasm? , 1982, Cell.

[38]  R. Ellis,et al.  Macromolecular crowding: an important but neglected aspect of the intracellular environment. , 2001, Current opinion in structural biology.

[39]  Chih-chen Wang,et al.  Effects of Macromolecular Crowding on the Refolding of Glucose- 6-phosphate Dehydrogenase and Protein Disulfide Isomerase* , 2001, The Journal of Biological Chemistry.

[40]  T. Laurent THE INTERACTION BETWEEN POLYSACCHARIDES AND OTHER MACROMOLECULES. 5. THE SOLUBILITY OF PROTEINS IN THE PRESENCE OF DEXTRAN. , 1963, The Biochemical journal.

[41]  C. F. Curtiss,et al.  Molecular Theory Of Gases And Liquids , 1954 .

[42]  R. P. Roy,et al.  Volume Exclusion Effect as a Driving Force for Reverse Proteolysis , 2002, The Journal of Biological Chemistry.

[43]  A. Minton,et al.  Macromolecular Crowding Accelerates Amyloid Formation by Human Apolipoprotein C-II* , 2002, The Journal of Biological Chemistry.