Genetic analysis of the septal peptidoglycan synthase FtsWI complex supports a conserved activation mechanism for SEDS-bPBP complexes

SEDS family peptidoglycan (PG) glycosyltransferases RodA and FtsW require their cognate transpeptidases PBP2 and FtsI (class B penicillin binding proteins) to synthesize PG along the cell cylinder and at the septum, respectively. The activities of these SEDS-bPBPs complexes are tightly regulated to ensure proper cell elongation and division. In Escherichia coli FtsN switches FtsA and FtsQLB to the active forms that synergize to stimulate FtsWI, but the exact mechanism is not well understood. Previously, we isolated an activation mutation in ftsW (M269I) that allows cell division with reduced FtsN function. To try and understand the basis for activation we isolated additional substitutions at this position and found that only the original substitution produced an active mutant whereas drastic changes resulted in an inactive mutant. In another approach we isolated suppressors of an inactive FtsL mutant and obtained FtsWE289G and FtsIK211I and found they bypassed FtsN. Epistatic analysis of these mutations and others confirmed that the FtsN-triggered activation signal goes from FtsQLB to FtsI to FtsW. Mapping these mutations and others affecting the activities of FtsWI on the RodA-PBP2 structure revealed they are located at the interaction interface between the extracellular loop 4 (ECL4) of FtsW and the pedestal domain of FtsI (PBP3). This supports a model in which the interaction between the ECL4 of SEDS proteins and the pedestal domain of their cognate bPBPs plays a critical role in the activation mechanism. Author summary Bacterial cell division requires the synthesis of septal peptidoglycan by the widely conserved SEDS-bPBP protein complex FtsWI, but how the complex is activated during cell division is still poorly understood. Previous studies suggest that FtsN initiates a signaling cascade in the periplasm to activate FtsW. Here we isolated and characterized activated FtsW and FtsI mutants and confirmed that the signaling cascade for FtsW activation goes from FtsN to FtsQLB to FtsI and then to FtsW. The residues corresponding to mutations affecting FtsWI activation are clustered to a small region of the interaction interface between the pedestal domain of FtsI and the extracellular loop 4 of FtsW, suggesting that this interaction mediates activation of FtsW. This is strikingly similar to the proposed activation mechanism for the RodA-PBP2 complex, another SEDS-bPBP complex required for cell elongation. Thus, the two homologous SEDS-bPBP complexes are activated similarly by completely unrelated activators that modulate the interaction interface between the SEDS proteins and the bPBPs.

[1]  P. D. de Boer,et al.  A two-track model for the spatiotemporal coordination of bacterial septal cell wall synthesis revealed by single-molecule imaging of FtsW , 2020, Nature Microbiology.

[2]  Shishen Du,et al.  Essential Role for FtsL in Activation of Septal Peptidoglycan Synthesis , 2020, mBio.

[3]  E. Breukink,et al.  The bacterial cell division protein fragment EFtsN binds to and activates the major peptidoglycan synthase PBP1b , 2020, The Journal of Biological Chemistry.

[4]  T. Bernhardt,et al.  A conserved subcomplex within the bacterial cytokinetic ring activates cell wall synthesis by the FtsW-FtsI synthase , 2020, Proceedings of the National Academy of Sciences.

[5]  Shishen Du,et al.  Roles of ATP Hydrolysis by FtsEX and Interaction with FtsA in Regulation of Septal Peptidoglycan Synthesis and Hydrolysis , 2020, mBio.

[6]  W. Vollmer,et al.  Regulation of peptidoglycan synthesis and remodelling , 2020, Nature Reviews Microbiology.

[7]  Anna G. Green,et al.  Structural coordination of polymerization and crosslinking by a SEDS-bPBP peptidoglycan synthase complex , 2020, Nature Microbiology.

[8]  P. D. de Boer,et al.  FtsW exhibits distinct processive motions driven by either septal cell wall synthesis or FtsZ treadmilling in E. coli , 2019, bioRxiv.

[9]  W. Vollmer,et al.  MreC and MreD balance the interaction between the elongasome proteins PBP2 and RodA , 2019, bioRxiv.

[10]  Shishen Du,et al.  How FtsEX localizes to the Z ring and interacts with FtsA to regulate cell division , 2019, Molecular microbiology.

[11]  D. Baker,et al.  Protein interaction networks revealed by proteome coevolution , 2019, Science.

[12]  Patricia Reed,et al.  SEDS–bPBP pairs direct lateral and septal peptidoglycan synthesis in Staphylococcus aureus , 2019, Nature Microbiology.

[13]  E. Breukink,et al.  Regulation of the Peptidoglycan Polymerase Activity of PBP1b by Antagonist Actions of the Core Divisome Proteins FtsBLQ and FtsN , 2019, mBio.

[14]  A. Kruse,et al.  FtsW is a peptidoglycan polymerase that is functional only in complex with its cognate penicillin-binding protein , 2018, Nature Microbiology.

[15]  A. Kruse,et al.  A central role for PBP2 in the activation of peptidoglycan polymerization by the bacterial cell elongation machinery , 2018, PLoS genetics.

[16]  Debora S. Marks,et al.  Structure of the peptidoglycan polymerase RodA resolved by evolutionary coupling analysis , 2018, Nature.

[17]  C. Contreras-Martel,et al.  Molecular architecture of the PBP2–MreC core bacterial cell wall synthesis complex , 2017, Nature Communications.

[18]  J. Errington,et al.  Functional redundancy of division specific penicillin‐binding proteins in Bacillus subtilis , 2017, Molecular microbiology.

[19]  Shishen Du,et al.  Assembly and activation of the Escherichia coli divisome , 2017, Molecular microbiology.

[20]  J. Marto,et al.  Bacterial cell wall biogenesis is mediated by SEDS and PBP polymerase families functioning semi-autonomously , 2016, Nature Microbiology.

[21]  Shishen Du,et al.  FtsEX acts on FtsA to regulate divisome assembly and activity , 2016, Proceedings of the National Academy of Sciences.

[22]  A. Kruse,et al.  SEDS proteins are a widespread family of bacterial cell wall polymerases , 2016, Nature.

[23]  Patrice Koehl,et al.  Faculty Opinions recommendation of Large-scale determination of previously unsolved protein structures using evolutionary information. , 2016 .

[24]  M. Tsang,et al.  Guiding divisome assembly and controlling its activity. , 2015, Current opinion in microbiology.

[25]  M. Tsang,et al.  A role for the FtsQLB complex in cytokinetic ring activation revealed by an ftsL allele that accelerates division , 2015, Molecular microbiology.

[26]  Bing Liu,et al.  Roles for both FtsA and the FtsBLQ subcomplex in FtsN‐stimulated cell constriction in Escherichia coli , 2015, Molecular microbiology.

[27]  T. Bernhardt,et al.  Beta-Lactam Antibiotics Induce a Lethal Malfunctioning of the Bacterial Cell Wall Synthesis Machinery , 2014, Cell.

[28]  Joshua W. Modell,et al.  A DNA Damage-Induced, SOS-Independent Checkpoint Regulates Cell Division in Caulobacter crescentus , 2014, PLoS biology.

[29]  Y. Kohara,et al.  Mutations in cell elongation genes mreB, mrdA and mrdB suppress the shape defect of RodZ-deficient cells , 2013, Molecular microbiology.

[30]  Joshua W. Modell,et al.  A DNA damage checkpoint in Caulobacter crescentus inhibits cell division through a direct interaction with FtsW. , 2011, Genes & development.

[31]  S. Walker,et al.  Lipoprotein Cofactors Located in the Outer Membrane Activate Bacterial Cell Wall Polymerases , 2010, Cell.

[32]  Waldemar Vollmer,et al.  Regulation of peptidoglycan synthesis by outer membrane proteins , 2010, Cell.

[33]  J. Lutkenhaus FtsN—Trigger for Septation , 2009, Journal of bacteriology.

[34]  P. D. de Boer,et al.  Self-Enhanced Accumulation of FtsN at Division Sites and Roles for Other Proteins with a SPOR Domain (DamX, DedD, and RlpA) in Escherichia coli Cell Constriction , 2009, Journal of bacteriology.

[35]  Ryan J. Kustusch,et al.  ATP-Binding Site Lesions in FtsE Impair Cell Division , 2009, Journal of bacteriology.

[36]  E. Breukink,et al.  The Essential Cell Division Protein FtsN Interacts with the Murein (Peptidoglycan) Synthase PBP1B in Escherichia coli* , 2007, Journal of Biological Chemistry.

[37]  W. Margolin,et al.  An altered FtsA can compensate for the loss of essential cell division protein FtsN in Escherichia coli , 2007, Molecular microbiology.

[38]  Waldemar Vollmer,et al.  Interaction between two murein (peptidoglycan) synthases, PBP3 and PBP1B, in Escherichia coli , 2006, Molecular microbiology.

[39]  Jennifer L. Wendt,et al.  The Transmembrane Helix of the Escherichia coli Division Protein FtsI Localizes to the Septal Ring , 2005, Journal of bacteriology.

[40]  M. Wissel,et al.  Genetic Analysis of the Cell Division Protein FtsI (PBP3): Amino Acid Substitutions That Impair Septal Localization of FtsI and Recruitment of FtsN , 2004, Journal of bacteriology.

[41]  J. Ayala,et al.  Topological characterization of the essential Escherichia coli cell division protein FtsW. , 2002, FEMS microbiology letters.

[42]  D. S. Weiss,et al.  The Escherichia coli Cell Division Protein FtsW Is Required To Recruit Its Cognate Transpeptidase, FtsI (PBP3), to the Division Site , 2002, Journal of bacteriology.

[43]  J. Lutkenhaus,et al.  FtsN, a late recruit to the septum in Escherichia coli , 1997, Molecular microbiology.

[44]  M. Ikeda,et al.  Structural similarity among Escherichia coli FtsW and RodA proteins and Bacillus subtilis SpoVE protein, which function in cell division, cell elongation, and spore formation, respectively , 1989, Journal of bacteriology.