Phylogroup profiling and the genetic determinants of extended spectrum beta-lactamase producing Escherichia coli isolated from clinical samples in lagos, Nigeria

1 2 Department of Medical Laboratory Science, College of Medicine, University of Lagos, Nigeria. Institute of Medical Microbiology, University Hospital Münster, Münster, Germany, (E-mail: onwugamba.francis@gmail.com). Molecular Biology and Biotechnology Department, Nigerian Institute of Medical Research, Lagos, Nigeria, (E-mail: biiwalokun@gmail.com). *Corresponding author's e-mail: adesolaolalekan@unilag.edu.ng, Tel.: +2347084104478.

[1]  W. Abebe,et al.  Distribution of virulence genes and phylogenetics of uropathogenic Escherichia coli among urinary tract infection patients in Addis Ababa, Ethiopia , 2019, BMC Infectious Diseases.

[2]  P. Schierack,et al.  Phylogenetic grouping and biofilm formation of multidrug resistant Escherichia coli isolates from humans, animals and food products in South-West Nigeria , 2019, Scientific African.

[3]  H. Goossens,et al.  Point prevalence survey of antimicrobial prescription in a tertiary hospital in South East Nigeria: A call for improved antibiotic stewardship. , 2019, Journal of global antimicrobial resistance.

[4]  J. Knudsen,et al.  ESBL‐production in Escherichia coli and Klebsiella pneumoniae isolates from Nigeria , 2019, MicrobiologyOpen.

[5]  A. Ghasemian,et al.  The relation of phylogroups, serogroups, virulence factors and resistance pattern of Escherichia coli isolated from children with septicemia , 2019, New microbes and new infections.

[6]  E. Klein,et al.  Antibiotic Use Among Hospitalized Adult Patients in a Setting with Limited Laboratory Infrastructure in Freetown Sierra Leone, 2017-2018. , 2019, International journal of infectious diseases : IJID : official publication of the International Society for Infectious Diseases.

[7]  J. Arnemann Multiplex-PCR , 2019, Springer Reference Medizin.

[8]  R. Colwell,et al.  Comparative Genomics of Escherichia coli Isolated from Skin and Soft Tissue and Other Extraintestinal Infections , 2017, mBio.

[9]  J. Sarantuya,et al.  Detection of virulence genes, phylogenetic group and antibiotic resistance of uropathogenic Escherichia coli in Mongolia. , 2017, Journal of infection in developing countries.

[10]  W. Elias,et al.  Diarrheagenic Escherichia coli , 2016, Brazilian journal of microbiology : [publication of the Brazilian Society for Microbiology].

[11]  J. Frye,et al.  Prevalence and multidrug resistance of Escherichia coli from community-acquired infections in Lagos, Nigeria. , 2016, Journal of infection in developing countries.

[12]  V. Rotimi,et al.  Sequence analysis of genes mediating extended-spectrum beta-lactamase (ESBL) production in isolates of Enterobacteriaceae in a Lagos Teaching Hospital, Nigeria , 2015, BMC Infectious Diseases.

[13]  M. J. Pons,et al.  Diarrheagenic Escherichia coli Phylogroups Are Associated with Antibiotic Resistance and Duration of Diarrheal Episode , 2015, TheScientificWorldJournal.

[14]  H. Ansari,et al.  Phylogenetic Groups of Escherichia coli Strains from Patients with Urinary Tract Infection in Iran Based on the New Clermont Phylotyping Method , 2015, BioMed research international.

[15]  J. Štšepetova,et al.  The Escherichia coli phylogenetic group B2 with integrons prevails in childhood recurrent urinary tract infections , 2014, APMIS : acta pathologica, microbiologica, et immunologica Scandinavica.

[16]  V. Rotimi,et al.  Point-surveillance of antibiotic resistance in Enterobacteriaceae isolates from patients in a Lagos Teaching Hospital, Nigeria. , 2013, Journal of infection and public health.

[17]  A. Hazra,et al.  Molecular Characterization of Uropathogenic Escherichia coli: Nalidixic Acid and Ciprofloxacin Resistance, Virulent Factors and Phylogenetic Background. , 2013, Journal of clinical and diagnostic research : JCDR.

[18]  E. Denamur,et al.  The Clermont Escherichia coli phylo-typing method revisited: improvement of specificity and detection of new phylo-groups. , 2013, Environmental microbiology reports.

[19]  L. Nilsson,et al.  Multiplex PCR amplification assay for the detection of blaSHV, blaTEM and blaCTX‐M genes in Enterobacteriaceae , 2007, APMIS : acta pathologica, microbiologica, et immunologica Scandinavica.