TP53 mutations in human cancers: functional selection and impact on cancer prognosis and outcomes

A large amount of data is available on the functional impact of missense mutations in TP53 and on mutation patterns in many different cancers. New data on mutant p53 protein function, cancer phenotype and prognosis have recently been integrated in the International Agency for Research on Cancer TP53 database (http://www-p53.iarc.fr/). Based on these data, we summarize here current knowledge on the respective roles of mutagenesis and biological selection of mutations with specific functional characteristic in shaping the patterns and phenotypes of mutations observed in human cancers. The main conclusion is that intrinsic mutagenicity rates, loss of transactivation activities, and to a lesser extent, dominant-negative activities are the main driving forces that determine TP53 mutation patterns and influence tumor phenotype. In contrast, current experimental data on the acquisition of oncogenic activities (gain of function) by p53 mutants are too scarce and heterogenous to assess whether this property has an impact on tumor development and outcome. In the case of inherited TP53 mutations causing Li–Fraumeni and related syndromes, the age at onset of some tumor types is in direct relation with the degree of loss of transactivation capacity of missense mutations. Finally, studies on large case series demonstrate that TP53 mutations are independent markers of bad prognosis in breast and several other cancers, and that the exact type and position of the mutation influences disease outcome. Further studies are needed to determine how TP53 haplotypes or loss of alleles interact with mutations to modulate their impact on cancer development and prognosis.

[1]  M. Hollstein,et al.  TP53 mutation signature supports involvement of aristolochic acid in the aetiology of endemic nephropathy‐associated tumours , 2009, International journal of cancer.

[2]  B. Gusterson,et al.  A common polymorphism acts as an intragenic modifier of mutant p53 behaviour , 2000, Nature Genetics.

[3]  A. Fersht,et al.  Structures of p53 Cancer Mutants and Mechanism of Rescue by Second-site Suppressor Mutations* , 2005, Journal of Biological Chemistry.

[4]  R. Eeles Germline mutations in the TP53 gene. , 1995, Cancer surveys.

[5]  M. Hollstein,et al.  p53 gain-of-function cancer mutants induce genetic instability by inactivating ATM , 2007, Nature Cell Biology.

[6]  J. Wands,et al.  Selective G to T mutations of p53 gene in hepatocellular carcinoma from southern Africa , 1991, Nature.

[7]  R. Ribeiro,et al.  A novel mechanism of tumorigenesis involving pH-dependent destabilization of a mutant p53 tetramer , 2002, Nature Structural Biology.

[8]  J. Varley,et al.  Relative frequency and morphology of cancers in carriers of germline TP53 mutations , 2001, Oncogene.

[9]  P. Jeffrey,et al.  Crystal structure of a p53 tumor suppressor-DNA complex: understanding tumorigenic mutations. , 1994, Science.

[10]  C. Harris,et al.  The IARC TP53 database: New online mutation analysis and recommendations to users , 2002, Human mutation.

[11]  M. Hollstein,et al.  p53 Designer Genes for the Modern Mouse , 2004, Cell cycle.

[12]  J. Bergh,et al.  The clinical value of somatic TP53 gene mutations in 1,794 patients with breast cancer. , 2006, Clinical cancer research : an official journal of the American Association for Cancer Research.

[13]  M. Spitz,et al.  p53 Genotypes and Haplotypes Associated With Lung Cancer Susceptibility and Ethnicity. , 2002, Journal of the National Cancer Institute.

[14]  F. Pontén,et al.  Molecular pathology in basal cell cancer with p53 as a genetic marker , 1997, Oncogene.

[15]  Peter A. Jones,et al.  Methylation, mutation and cancer , 1992, BioEssays : news and reviews in molecular, cellular and developmental biology.

[16]  S. Friend,et al.  Screening patients for heterozygous p53 mutations using a functional assay in yeast , 1993, Nature genetics.

[17]  S. Bull,et al.  The combination of p53 mutation and neu/erbB-2 amplification is associated with poor survival in node-negative breast cancer. , 2004, Journal of clinical oncology : official journal of the American Society of Clinical Oncology.

[18]  A. Levine p53, the Cellular Gatekeeper for Growth and Division , 1997, Cell.

[19]  M. Hollstein,et al.  p53 and human cancer: the first ten thousand mutations. , 2000, Advances in cancer research.

[20]  R. Kreienberg,et al.  Intron variants of the p53 gene are associated with increased risk for ovarian cancer but not in carriers of BRCA1 or BRCA2 germline mutations , 1999, British Journal of Cancer.

[21]  M. Hollstein,et al.  Ser46 Phosphorylation Regulates p53-Dependent Apoptosis and Replicative Senescence , 2006, Cell cycle.

[22]  S. Wingren,et al.  p53 polymorphic variants at codon 72 and the outcome of therapy in randomized breast cancer patients , 2006, Pharmacogenetics and genomics.

[23]  Yuntao Xie,et al.  p53 Codon 72 Polymorphism Predicts the Pathologic Response to Neoadjuvant Chemotherapy in Patients with Breast Cancer , 2005, Clinical Cancer Research.

[24]  C. Harris,et al.  TP53 mutations and hepatocellular carcinoma: insights into the etiology and pathogenesis of liver cancer , 2007, Oncogene.

[25]  S. Sommer,et al.  Beyond Li Fraumeni Syndrome: clinical characteristics of families with p53 germline mutations. , 2009, Journal of clinical oncology : official journal of the American Society of Clinical Oncology.

[26]  Andrew D. Yates,et al.  A screen of the complete protein kinase gene family identifies diverse patterns of somatic mutations in human breast cancer , 2005, Nature Genetics.

[27]  W. Mcdougal An inherited p53 mutation that contributes in a tissue-specific manner to pediatric adrenal cortical carcinoma. , 2002, The Journal of urology.

[28]  A. Levine,et al.  Single-nucleotide polymorphisms in the p53 pathway. , 2005, Cold Spring Harbor symposia on quantitative biology.

[29]  T. Rebbeck,et al.  p53 germline polymorphisms are associated with an increased risk for breast cancer in German women. , 1998, Anticancer research.

[30]  L. Strong,et al.  Gain of Function of a p53 Hot Spot Mutation in a Mouse Model of Li-Fraumeni Syndrome , 2004, Cell.

[31]  P. Lønning,et al.  The TP53 codon 72 polymorphism may affect the function of TP53 mutations in breast carcinomas but not in colorectal carcinomas. , 2002, Cancer epidemiology, biomarkers & prevention : a publication of the American Association for Cancer Research, cosponsored by the American Society of Preventive Oncology.

[32]  T. Crook,et al.  Polymorphism in wild-type p53 modulates response to chemotherapy in vitro and in vivo , 2004, Oncogene.

[33]  L. Strong,et al.  Germ line p53 mutations in a familial syndrome of breast cancer, sarcomas, and other neoplasms. , 1990, Science.

[34]  S. Friend,et al.  A functional screen for germ line p53 mutations based on transcriptional activation. , 1992, Cancer research.

[35]  T. Frebourg,et al.  Screening for TP53 rearrangements in families with the Li–Fraumeni syndrome reveals a complete deletion of the TP53 gene , 2003, Oncogene.

[36]  Francesca Storici,et al.  Differential Transactivation by the p53 Transcription Factor Is Highly Dependent on p53 Level and Promoter Target Sequence , 2002, Molecular and Cellular Biology.

[37]  Hongjuan Zhao,et al.  TP53 mutation status and gene expression profiles are powerful prognostic markers of breast cancer , 2007, Breast Cancer Research.

[38]  E. Guinó,et al.  A TP53 polymorphism is associated with increased risk of colorectal cancer and with reduced levels of TP53 mRNA , 2004, Oncogene.

[39]  K. Wiman,et al.  Reactivation of Mutant p53 and Induction of Apoptosis in Human Tumor Cells by Maleimide Analogs* , 2005, Journal of Biological Chemistry.

[40]  A. Børresen-Dale,et al.  TP53 mutations in early-stage ovarian carcinoma, relation to long-term survival , 2004, British Journal of Cancer.

[41]  G. Giglia-Mari,et al.  TP53 mutations in human skin cancers , 2003, Human mutation.

[42]  C. Marsit,et al.  TP53 mutation, allelism and survival in non-small cell lung cancer. , 2005, Carcinogenesis.

[43]  H. Johnsen,et al.  p53 polymorphism and risk of cervical cancer , 1998, Nature.

[44]  R. Birgander,et al.  Is p53 polymorphism maintained by natural selection? , 1994, Human heredity.

[45]  D. Pim,et al.  p53 polymorphic variants at codon 72 exert different effects on cell cycle progression , 2004, International journal of cancer.

[46]  C. Harris,et al.  TP53 mutation spectra and load: a tool for generating hypotheses on the etiology of cancer. , 2004, IARC scientific publications.

[47]  C. Bonaïti‐pellié,et al.  Impact of the MDM2 SNP309 and p53 Arg72Pro polymorphism on age of tumour onset in Li-Fraumeni syndrome , 2005, Journal of Medical Genetics.

[48]  L. Bracco,et al.  Restoration of transcriptional activity of p53 mutants in human tumour cells by intracellular expression of anti-p53 single chain Fv fragments , 1999, Oncogene.

[49]  M. Vidal,et al.  Dominant-negative p53 mutations selected in yeast hit cancer hot spots. , 1996, Proceedings of the National Academy of Sciences of the United States of America.

[50]  T. Lindahl Instability and decay of the primary structure of DNA , 1993, Nature.

[51]  M. Olivier,et al.  Impact of mutant p53 functional properties on TP53 mutation patterns and tumor phenotype: lessons from recent developments in the IARC TP53 database , 2007, Human mutation.

[52]  Andrew Shenton,et al.  BRCA1, BRCA2 and TP53 mutations in very early-onset breast cancer with associated risks to relatives. , 2006, European journal of cancer.

[53]  A. Levine,et al.  Surfing the p53 network , 2000, Nature.

[54]  Yusuke Nakamura,et al.  p53AIP1, a Potential Mediator of p53-Dependent Apoptosis, and Its Regulation by Ser-46-Phosphorylated p53 , 2000, Cell.

[55]  T. Soussi,et al.  Analysis of the most representative tumour‐derived p53 mutants reveals that changes in protein conformation are not correlated with loss of transactivation or inhibition of cell proliferation. , 1994, The EMBO journal.

[56]  M. Hollstein,et al.  Mouse models for generating P53 gene mutation spectra. , 2002, Toxicology letters.

[57]  A. Fersht,et al.  Structural basis for understanding oncogenic p53 mutations and designing rescue drugs , 2006, Proceedings of the National Academy of Sciences.

[58]  A. Levine,et al.  A Single Nucleotide Polymorphism in the MDM2 Promoter Attenuates the p53 Tumor Suppressor Pathway and Accelerates Tumor Formation in Humans , 2004, Cell.

[59]  M. Murphy,et al.  The codon 72 polymorphic variants of p53 have markedly different apoptotic potential , 2003, Nature Genetics.

[60]  A. Fersht,et al.  Quantitative analysis of residual folding and DNA binding in mutant p53 core domain: definition of mutant states for rescue in cancer therapy , 2000, Oncogene.

[61]  Eduardo Sontag,et al.  Transcriptional control of human p53-regulated genes , 2008, Nature Reviews Molecular Cell Biology.

[62]  M. Protopopova,et al.  Small molecule RITA binds to p53, blocks p53–HDM-2 interaction and activates p53 function in tumors , 2004, Nature Medicine.

[63]  A. Børresen-Dale,et al.  Effect of the codon 72 polymorphism (c.215G>C, p.Arg72Pro) in combination with somatic sequence variants in the TP53 gene on survival in patients with advanced ovarian carcinoma , 2004, Human mutation.

[64]  M. Hollstein,et al.  MEF immortalization to investigate the ins and outs of mutagenesis. , 2006, Carcinogenesis.

[65]  B. Gusterson,et al.  p53 polymorphism influences response in cancer chemotherapy via modulation of p73-dependent apoptosis. , 2003, Cancer cell.

[66]  G. Parmigiani,et al.  Core Signaling Pathways in Human Pancreatic Cancers Revealed by Global Genomic Analyses , 2008, Science.

[67]  M. Hollstein,et al.  Common tumour p53 mutations in immortalized cells from Hupki mice heterozygous at codon 72. , 2007, Oncogene.

[68]  T. Eisen,et al.  TP53 polymorphisms and lung cancer risk: a systematic review and meta-analysis. , 2003, Mutagenesis.

[69]  M. Olivier,et al.  The TP53 mutation, R337H, is associated with Li-Fraumeni and Li-Fraumeni-like syndromes in Brazilian families. , 2007, Cancer letters.

[70]  Brian H. Dunford-Shore,et al.  Somatic mutations affect key pathways in lung adenocarcinoma , 2008, Nature.

[71]  Irene M. Leigh,et al.  Role of a p53 polymorphism in the development of human papilloma-virus-associated cancer , 1998, Nature.

[72]  M. Hollstein,et al.  Knock-in mice with a chimeric human/murine p53 gene develop normally and show wild-type p53 responses to DNA damaging agents: a new biomedical research tool , 2001, Oncogene.

[73]  A. Levine,et al.  MDM2 SNP309 accelerates tumor formation in a gender-specific and hormone-dependent manner. , 2006, Cancer research.

[74]  R. Iggo,et al.  Inactivate the remaining p53 allele or the alternate p73? Preferential selection of the Arg72 polymorphism in cancers with recessive p53 mutants but not transdominant mutants. , 2001, Carcinogenesis.

[75]  J. Delgado,et al.  Two germ line polymorphisms of the tumour suppressor gene p53 may influence the biology of chronic lymphocytic leukaemia. , 2006, Leukemia research.

[76]  H. Stunnenberg,et al.  Characterization of genome-wide p53-binding sites upon stress response , 2008, Nucleic acids research.

[77]  R. Beart,et al.  Mechanisms for the involvement of DNA methylation in colon carcinogenesis. , 1996, Cancer research.

[78]  B. Iacopetta,et al.  Clonal Analysis of Colorectal Tumors Using K-ras and p53 Gene Mutations as Markers , 1995, Diagnostic molecular pathology : the American journal of surgical pathology, part B.

[79]  D. Evans,et al.  Cancer phenotype correlates with constitutional TP53 genotype in families with the Li–Fraumeni syndrome , 1998, Oncogene.

[80]  P. Hainaut,et al.  On the origin of G --> T transversions in lung cancer. , 2003, Mutation research.

[81]  R. Eeles,et al.  Li-Fraumeni and related syndromes: correlation between tumor type, family structure, and TP53 genotype. , 2003, Cancer research.

[82]  Jacqueline Lehmann,et al.  TP53 Status and Response to Chemotherapy in Breast Cancer , 2008, Pathobiology.

[83]  Frank M Boeckler,et al.  Targeted rescue of a destabilized mutant of p53 by an in silico screened drug , 2008, Proceedings of the National Academy of Sciences.

[84]  T. Kirchhoff,et al.  A double germline mutations in the APC and p53 genes. , 2000, Neoplasma.

[85]  Hans Clevers,et al.  Crypt stem cells as the cells-of-origin of intestinal cancer , 2009, Nature.

[86]  T. Jacks,et al.  Mutant p53 Gain of Function in Two Mouse Models of Li-Fraumeni Syndrome , 2004, Cell.

[87]  M. Tang,et al.  Preferential Formation of Benzo[a]pyrene Adducts at Lung Cancer Mutational Hotspots in P53 , 1996, Science.

[88]  L. R. Dearth,et al.  Inactive full-length p53 mutants lacking dominant wild-type p53 inhibition highlight loss of heterozygosity as an important aspect of p53 status in human cancers. , 2007, Carcinogenesis.

[89]  C. Crum,et al.  Endometrial Glandular Dysplasia with Frequent p53 Gene Mutation: A Genetic Evidence Supporting Its Precancer Nature for Endometrial Serous Carcinoma , 2008, Clinical Cancer Research.

[90]  B. Jelaković,et al.  Aristolochic acid and the etiology of endemic (Balkan) nephropathy , 2007, Proceedings of the National Academy of Sciences.

[91]  P. Hainaut,et al.  Molecular precursor lesions in oesophageal cancer. , 1998, Cancer surveys.

[92]  R. Catarino,et al.  TP53 and P21 polymorphisms: response to cisplatinum/paclitaxel-based chemotherapy in ovarian cancer. , 2006, Biochemical and biophysical research communications.

[93]  B. Vogelstein,et al.  Mutant p53 DNA clones from human colon carcinomas cooperate with ras in transforming primary rat cells: a comparison of the "hot spot" mutant phenotypes. , 1990, Cell growth & differentiation : the molecular biology journal of the American Association for Cancer Research.

[94]  N. Muñoz,et al.  TP53 polymorphism, HPV infection, and risk of cervical cancer. , 2001, Cancer epidemiology, biomarkers & prevention : a publication of the American Association for Cancer Research, cosponsored by the American Society of Preventive Oncology.

[95]  W. Blattner,et al.  A cancer family syndrome in twenty-four kindreds. , 1988, Cancer research.

[96]  P. Hall,et al.  An expression signature for p53 status in human breast cancer predicts mutation status, transcriptional effects, and patient survival. , 2005, Proceedings of the National Academy of Sciences of the United States of America.

[97]  J. Garber,et al.  Prevalence of early onset colorectal cancer in 397 patients with classic Li-Fraumeni syndrome. , 2006, Gastroenterology.

[98]  R. Tibshirani,et al.  Gene expression patterns of breast carcinomas distinguish tumor subclasses with clinical implications , 2001, Proceedings of the National Academy of Sciences of the United States of America.

[99]  L. Holmberg,et al.  Complete sequencing of the p53 gene provides prognostic information in breast cancer patients, particularly in relation to adjuvant systemic therapy and radiotherapy , 1995, Nature Medicine.

[100]  K. Sabapathy,et al.  Evaluation of the Combined Effect of p53 Codon 72 Polymorphism and Hotspot Mutations in Response to Anticancer Drugs , 2005, Clinical Cancer Research.

[101]  A. Metspalu,et al.  Arrayed primer extension resequencing of mutations in the TP53 tumor suppressor gene: comparison with denaturing HPLC and direct sequencing. , 2005, Clinical chemistry.

[102]  K. Kinzler,et al.  Definition of a consensus binding site for p53 , 1992, Nature Genetics.

[103]  Robert W Platt,et al.  p53 Codon 72 Polymorphism and Cervical Neoplasia , 2004, Cancer Epidemiology Biomarkers & Prevention.

[104]  R. A. Metcalf,et al.  Mutational hot spot in the p53 gene in human hepatocellular carcinomas , 1991, Nature.

[105]  E. Birney,et al.  Patterns of somatic mutation in human cancer genomes , 2007, Nature.

[106]  K. Sabapathy,et al.  Trp53-dependent DNA-repair is affected by the codon 72 polymorphism , 2006, Oncogene.

[107]  S. Kato,et al.  Understanding the function–structure and function–mutation relationships of p53 tumor suppressor protein by high-resolution missense mutation analysis , 2003, Proceedings of the National Academy of Sciences of the United States of America.

[108]  E. Appella,et al.  Tumor susceptibility and apoptosis defect in a mouse strain expressing a human p53 transgene. , 2006, Cancer research.

[109]  B. Vogelstein,et al.  p53 mutations in human cancers. , 1991, Science.

[110]  C. Marsit,et al.  TP 53 mutation , allelism and survival in non-small cell lung cancer , 2005 .

[111]  Miranda Thomas,et al.  Two Polymorphic Variants of Wild-Type p53 Differ Biochemically and Biologically , 1999, Molecular and Cellular Biology.

[112]  C. Franceschi,et al.  Retention of the p53 codon 72 arginine allele is associated with a reduction of disease-free and overall survival in arginine/proline heterozygous breast cancer patients. , 2003, Clinical cancer research : an official journal of the American Association for Cancer Research.

[113]  N. Tretyakova,et al.  Tobacco smoke carcinogens, DNA damage and p53 mutations in smoking-associated cancers , 2002, Oncogene.

[114]  G. D’Orazi,et al.  HIPK2-induced p53Ser46 phosphorylation activates the KILLER/DR5-mediated caspase-8 extrinsic apoptotic pathway , 2007, Cell Death and Differentiation.

[115]  Jotun Hein,et al.  A nucleotide substitution model with nearest-neighbour interactions , 2004, ISMB/ECCB.

[116]  Graham M Lord,et al.  Aristolochic acid mutagenesis: molecular clues to the aetiology of Balkan endemic nephropathy-associated urothelial cancer , 2007 .

[117]  R. Schneider-Stock,et al.  Retention of the arginine allele in codon 72 of the p53 gene correlates with poor apoptosis in head and neck cancer. , 2004, The American journal of pathology.