UniProt: the Universal Protein knowledgebase

To provide the scientific community with a single, centralized, authoritative resource for protein sequences and functional information, the Swiss-Prot, TrEMBL and PIR protein database activities have united to form the Universal Protein Knowledgebase (UniProt) consortium. Our mission is to provide a comprehensive, fully classified, richly and accurately annotated protein sequence knowledgebase, with extensive cross-references and query interfaces. The central database will have two sections, corresponding to the familiar Swiss-Prot (fully manually curated entries) and TrEMBL (enriched with automated classification, annotation and extensive cross-references). For convenient sequence searches, UniProt also provides several non-redundant sequence databases. The UniProt NREF (UniRef) databases provide representative subsets of the knowledgebase suitable for efficient searching. The comprehensive UniProt Archive (UniParc) is updated daily from many public source databases. The UniProt databases can be accessed online (http://www.uniprot.org) or downloaded in several formats (ftp://ftp.uniprot.org/pub). The scientific community is encouraged to submit data for inclusion in UniProt.

Cathy H. Wu | Jerven T. Bolleman | Béatrice A. Cuche | C. R. Vinayaka | Alan W. Sousa da Silva | W. C. Barker | Leyla Jael García Castro | C. Arighi | D. Natale | A. Bateman | A. Bairoch | I. Xenarios | J. Garavelli | G. Georghiou | M. Magrane | R. Apweiler | T. Sawford | M. Martin | C. O’Donovan | B. Roechert | S. Poux | B. Boeckmann | R. Lopez | C. Sigrist | A. Bridge | L. Bougueleret | Weizhong Li | L. Breuza | M. Feuermann | U. Hinz | P. Masson | I. Pedruzzi | Serenella Ferro | E. Gasteiger | Hongzhan Huang | N. Redaschi | L. Yeh | A. Auchincloss | K. Axelsen | B. Bely | M. Blatter | E. Boutet | R. Britto | H. Bye-A-Jee | E. Coudert | A. Estreicher | L. Famiglietti | P. Garmiri | A. Gos | N. Gruaz-Gumowski | E. Hatton-Ellis | C. Hulo | F. Jungo | G. Keller | K. Laiho | D. Lieberherr | Y. Lussi | K. Pichler | C. Rivoire | E. Speretta | A. Shypitsyna | A. Stutz | S. Sundaram | M. Tognolli | N. Tyagi | K. Warner | R. Zaru | Ghislaine Argoud-Puy | P. McGarvey | H. Zellner | S. Paesano | E. Alpi | E. de Castro | B. Bursteinas | Michel Schneider | A. Renaux | Qinghua Wang | A. Morgat | Séverine Duvaud | A. Veuthey | V. Volynkin | M. Bingley | Manuela Pruess | Parit Bansal | K. Ross | Chuming Chen | Rabie Saidi | T. Lombardot | L. Aimo | Monica Pozzato | S. Rosanoff | Tunca Doğan | R. Antunes | T. Neto | S. Gehant | Jian Zhang | Andrew Nightingale | Jie Luo | P. Lemercier | L. Arminski | Yuqi Wang | Yongxing Chen | A. Cowley | B. Palka | Delphine Baratin | D. Poggioli | M. Doche | D. Dornevil | X. Martin | S. Pilbout | K. Sonesson | S. Staehli | L. Verbregue | Alex Maria Jesus Claire Michele Emanuele Ricardo Benoit Bateman Martin O’Donovan Magrane Alpi Antune | C. Bonilla | M. D. Giorgi | F. Fazzini | L. Figueira | Daniel Gonzalez | Wudong Liu | Alistair MacDougall | S. Pundir | L. Pureza | G. Qi | Edward Turner | T. Wardell | X. Watkins | C. Casal-Casas | V. Gerritsen | V. Lara | N. Nouspikel

[1]  H. Tettelin,et al.  The microbial pan-genome. , 2005, Current opinion in genetics & development.

[2]  Rolf Apweiler,et al.  UniProt archive , 2004, Bioinform..

[3]  John S Garavelli,et al.  The RESID Database of Protein Modifications as a resource and annotation tool , 2004, Proteomics.

[4]  陈奕欣 PIRSF: family classification system at the Protein Information Resource , 2004 .

[5]  Robert D. Finn,et al.  The Pfam protein families database , 2004, Nucleic Acids Res..

[6]  Amos Bairoch,et al.  Recent improvements to the PROSITE database , 2004, Nucleic Acids Res..

[7]  Robert S. Ledley,et al.  PIRSF: family classification system at the Protein Information Resource , 2004, Nucleic Acids Res..

[8]  Anne-Lise Veuthey,et al.  Automated annotation of microbial proteomes in SWISS-PROT , 2003, Comput. Biol. Chem..

[9]  Cathy H. Wu,et al.  Protein family classification and functional annotation , 2003, Comput. Biol. Chem..

[10]  Robert S. Ledley,et al.  The Protein Information Resource , 2003, Nucleic Acids Res..

[11]  Alex Bateman,et al.  The InterPro Database, 2003 brings increased coverage and new features , 2003, Nucleic Acids Res..

[12]  Vincent Lombard,et al.  The EMBL Nucleotide Sequence Database: major new developments , 2003, Nucleic Acids Res..

[13]  Zukang Feng,et al.  The Protein Data Bank and structural genomics , 2003, Nucleic Acids Res..

[14]  Maria Jesus Martin,et al.  The SWISS-PROT protein knowledgebase and its supplement TrEMBL in 2003 , 2003, Nucleic Acids Res..

[15]  Terri K. Attwood,et al.  PRINTS and its automatic supplement, prePRINTS , 2003, Nucleic Acids Res..

[16]  Juancarlos Chan,et al.  WormBase: a cross-species database for comparative genomics , 2003, Nucleic Acids Res..

[17]  Jérôme Gouzy,et al.  ProDom: Automated Clustering of Homologous Domains , 2002, Briefings Bioinform..

[18]  Philip Lijnzaad,et al.  The Ensembl genome database project , 2002, Nucleic Acids Res..

[19]  Peer Bork,et al.  Recent improvements to the SMART domain-based sequence annotation resource , 2002, Nucleic Acids Res..

[20]  Adam Godzik,et al.  Tolerating some redundancy significantly speeds up clustering of large protein databases , 2002, Bioinform..

[21]  W. Gelbart The FlyBase database of the Drosophila genome projects and community literature. , 2002, Nucleic acids research.

[22]  C. Chothia,et al.  Assignment of homology to genome sequences using a library of hidden Markov models that represent all proteins of known structure. , 2001, Journal of molecular biology.

[23]  Donna R. Maglott,et al.  RefSeq and LocusLink: NCBI gene-centered resources , 2001, Nucleic Acids Res..

[24]  Fan Yang,et al.  TIGRFAMs: a protein family resource for the functional identification of proteins , 2001, Nucleic Acids Res..

[25]  Rolf Apweiler,et al.  VARSPLIC: alternatively-spliced protein sequences derived from SWISS-PROT and TrEMBL , 2000, Bioinform..

[26]  M. Ashburner,et al.  Gene Ontology: tool for the unification of biology , 2000, Nature Genetics.

[27]  A. J. Schroeder,et al.  The FlyBase database of the Drosophila Genome Projects and community literature. , 2002, Nucleic acids research.

[28]  Rolf Apweiler,et al.  A novel method for automatic functional annotation of proteins , 1999, Bioinform..

[29]  Rolf Apweiler,et al.  A novel method for automatic and reliable functional annotation of proteins , 1998, German Conference on Bioinformatics.

[30]  J. Rossier,et al.  Posttranslational glutamylation of alpha-tubulin. , 1990, Science.