Highly sensitive spatial transcriptomics at near-cellular resolution with Slide-seqV2
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Evan Z. Macosko | Fei Chen | Evan Murray | Robert R Stickels | Pawan Kumar | Jilong Li | Jamie L Marshall | Daniela J Di Bella | Paola Arlotta | Evan Z Macosko | Jamie L. Marshall | Robert R. Stickels | P. Arlotta | Evan Murray | Fei Chen | D. D. Di Bella | Jilong Li | Pawan Kumar
[1] Li Qian,et al. SLICER: inferring branched, nonlinear cellular trajectories from single cell RNA-seq data , 2016, Genome Biology.
[2] J. Bolz,et al. Integration of opposing semaphorin guidance cues in cortical axons. , 2013, Cerebral cortex.
[3] Evan Z. Macosko,et al. Molecular Diversity and Specializations among the Cells of the Adult Mouse Brain , 2018, Cell.
[4] Andrew J. Hill,et al. The single cell transcriptional landscape of mammalian organogenesis , 2019, Nature.
[5] Lars E. Borm,et al. Spatial organization of the somatosensory cortex revealed by osmFISH , 2018, Nature Methods.
[6] M. Bear,et al. Role for rapid dendritic protein synthesis in hippocampal mGluR-dependent long-term depression. , 2000, Science.
[7] E. Klann,et al. Making synaptic plasticity and memory last: mechanisms of translational regulation. , 2009, Genes & development.
[8] Kenneth S Kosik,et al. Life at Low Copy Number: How Dendrites Manage with So Few mRNAs , 2016, Neuron.
[9] Richard Bonneau,et al. High-definition spatial transcriptomics for in situ tissue profiling , 2019, Nature Methods.
[10] L. Reijmers,et al. Functionally diverse dendritic mRNAs rapidly associate with ribosomes following a novel experience , 2014, Nature Communications.
[11] A. Munnich,et al. ALDH1A3 mutations cause recessive anophthalmia and microphthalmia. , 2013, American journal of human genetics.
[12] William E. Allen,et al. Three-dimensional intact-tissue sequencing of single-cell transcriptional states , 2018, Science.
[13] Patrik L. Ståhl,et al. Visualization and analysis of gene expression in tissue sections by spatial transcriptomics , 2016, Science.
[14] S. Lipton,et al. Targeted Disruption of Aldh1a1 (Raldh1) Provides Evidence for a Complex Mechanism of Retinoic Acid Synthesis in the Developing Retina , 2003, Molecular and Cellular Biology.
[15] James D Stephenson,et al. Quantifying the contribution of recessive coding variation to developmental disorders , 2017, Science.
[16] Susumu Tonegawa,et al. The Dendritic Branch Is the Preferred Integrative Unit for Protein Synthesis-Dependent LTP , 2011, Neuron.
[17] Patrick J. Short,et al. Evidence for 28 genetic disorders discovered by combining healthcare and research data , 2020, Nature.
[18] Thomas R. Gingeras,et al. STAR: ultrafast universal RNA-seq aligner , 2013, Bioinform..
[19] Paola Arlotta,et al. Generating neuronal diversity in the mammalian cerebral cortex. , 2015, Annual review of cell and developmental biology.
[20] Evan Z. Macosko,et al. Slide-seq: A scalable technology for measuring genome-wide expression at high spatial resolution , 2019, Science.
[21] Erin M. Schuman,et al. Alternative 3′ UTRs Modify the Localization, Regulatory Potential, Stability, and Plasticity of mRNAs in Neuronal Compartments , 2018, Neuron.
[22] A. Ghosh,et al. Patterning of cortical efferent projections by semaphorin-neuropilin interactions. , 1998, Science.
[23] Francisco M. De La Vega,et al. Sequence and structural variation in a human genome uncovered by short-read, massively parallel ligation sequencing using two-base encoding. , 2009, Genome research.
[24] Paul J. Hoffman,et al. Comprehensive Integration of Single-Cell Data , 2018, Cell.
[25] P. Chambon,et al. Embryonic retinoic acid synthesis is essential for early mouse post-implantation development , 1999, Nature Genetics.
[26] Carolina Wählby,et al. In situ sequencing for RNA analysis in preserved tissue and cells , 2013, Nature Methods.
[27] P. Bearcroft,et al. Stickler syndrome, ocular-only variants and a key diagnostic role for the ophthalmologist , 2011, Eye.
[28] G. Borsani,et al. A homeobox gene, vax2, controls the patterning of the eye dorsoventral axis. , 1999, Proceedings of the National Academy of Sciences of the United States of America.
[29] U. Andley. Crystallins in the eye: Function and pathology , 2007, Progress in Retinal and Eye Research.
[30] Johannes Stegmaier,et al. Third-generation in situ hybridization chain reaction: multiplexed, quantitative, sensitive, versatile, robust , 2018, Development.
[31] Evan Z. Macosko,et al. Highly Parallel Genome-wide Expression Profiling of Individual Cells Using Nanoliter Droplets , 2015, Cell.
[32] L. Nguyen,et al. Temporal patterning of apical progenitors and their daughter neurons in the developing neocortex , 2019, Science.
[33] Fabian J Theis,et al. Generalizing RNA velocity to transient cell states through dynamical modeling , 2019, bioRxiv.
[34] Sean C. Bendall,et al. Wishbone identifies bifurcating developmental trajectories from single-cell data , 2016, Nature Biotechnology.
[35] J. C. Love,et al. Second-Strand Synthesis-Based Massively Parallel scRNA-Seq Reveals Cellular States and Molecular Features of Human Inflammatory Skin Pathologies , 2020, Immunity.
[36] Guangchuang Yu,et al. clusterProfiler: an R package for comparing biological themes among gene clusters. , 2012, Omics : a journal of integrative biology.
[37] Robert B. Hartlage,et al. This PDF file includes: Materials and Methods , 2009 .
[38] Yvan Saeys,et al. A comparison of single-cell trajectory inference methods , 2019, Nature Biotechnology.
[39] Erik Sundström,et al. RNA velocity of single cells , 2018, Nature.
[40] P. Gruss,et al. Pax6 activity in the lens primordium is required for lens formation and for correct placement of a single retina in the eye. , 2000, Genes & development.
[41] John D. Storey. A direct approach to false discovery rates , 2002 .
[42] L. Cai,et al. In Situ Transcription Profiling of Single Cells Reveals Spatial Organization of Cells in the Mouse Hippocampus , 2016, Neuron.
[43] Cole Trapnell,et al. The dynamics and regulators of cell fate decisions are revealed by pseudotemporal ordering of single cells , 2014, Nature Biotechnology.
[44] X. Zhuang,et al. Spatially resolved, highly multiplexed RNA profiling in single cells , 2015, Science.