Detection and Quantification of Methylation in DNA using Solid-State
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K. Schulten | R. Bashir | F. Kosari | A. Nardulli | G. Vasmatzis | Gwendolyn I. Humphreys | B. Venkatesan | J. Munz | X. Zou | C. Sathe | Nanopores Shim | Xueqing Zou
[1] Jason Campbell,et al. Disease detection and management via single nanopore-based sensors. , 2012, Chemical reviews.
[2] S. Lam,et al. Genome-scale analysis of DNA methylation in lung adenocarcinoma and integration with mRNA expression , 2012, Genome research.
[3] David R. Latulippe,et al. Real-time analysis and selection of methylated DNA by fluorescence-activated single molecule sorting in a nanofluidic channel , 2012, Proceedings of the National Academy of Sciences.
[4] E. Pop,et al. Stacked graphene-Al2O3 nanopore sensors for sensitive detection of DNA and DNA-protein complexes. , 2012, ACS nano.
[5] R. Bashir,et al. Nanopore sensors for nucleic acid analysis. , 2011, Nature nanotechnology.
[6] M. Esteller,et al. Validation of a DNA methylation microarray for 450,000 CpG sites in the human genome , 2011, Epigenetics.
[7] Michael L. Klein,et al. Discrimination of methylcytosine from hydroxymethylcytosine in DNA molecules. , 2011, Journal of the American Chemical Society.
[8] H. Bayley,et al. Controlled translocation of individual DNA molecules through protein nanopores with engineered molecular brakes. , 2011, Nano letters.
[9] Mark Akeson,et al. Replication of Individual DNA Molecules under Electronic Control Using a Protein Nanopore , 2010, Nature nanotechnology.
[10] Z. Estrov,et al. Genome-wide DNA methylation profiling of chronic lymphocytic leukemia allows identification of epigenetically repressed molecular pathways with clinical impact , 2010, Epigenetics.
[11] A. Reina,et al. Graphene as a sub-nanometer trans-electrode membrane , 2010, Nature.
[12] A. Badran,et al. Direct DNA methylation profiling using methyl binding domain proteins. , 2010, Analytical chemistry.
[13] T. Rauch,et al. CpG island hypermethylation in human astrocytomas. , 2010, Cancer research.
[14] J. Zuo,et al. DNA Sensing Using Nanocrystalline Surface‐Enhanced Al2O3 Nanopore Sensors , 2010, Advanced functional materials.
[15] Jiwook Shim,et al. Single molecule sensing by nanopores and nanopore devices. , 2010, The Analyst.
[16] S. Cockroft,et al. Biological Nanopores for Single‐Molecule Biophysics , 2009, Chembiochem : a European journal of chemical biology.
[17] Cyrus Chargari,et al. Preliminary experience of helical tomotherapy for locally advanced pancreatic cancer. , 2009, World journal of gastroenterology.
[18] Z. Siwy,et al. Nanopore analytics: sensing of single molecules. , 2009, Chemical Society reviews.
[19] R. Bashir,et al. Highly Sensitive, Mechanically Stable Nanopore Sensors for DNA Analysis , 2009, Advanced materials.
[20] S. Garaj,et al. Probing surface charge fluctuations with solid-state nanopores. , 2009, Physical review letters.
[21] L. Movileanu,et al. Interrogating single proteins through nanopores: challenges and opportunities. , 2009, Trends in biotechnology.
[22] H. Bayley,et al. Continuous base identification for single-molecule nanopore DNA sequencing. , 2009, Nature nanotechnology.
[23] K Schulten,et al. Nanoelectromechanics of methylated DNA in a synthetic nanopore. , 2009, Biophysical journal.
[24] J. Cheville,et al. Hypermethylation of Genes for Diagnosis and Risk Stratification of Prostate Cancer , 2009, Cancer investigation.
[25] Meni Wanunu,et al. DNA translocation governed by interactions with solid-state nanopores. , 2008, Biophysical journal.
[26] D. Branton,et al. The potential and challenges of nanopore sequencing , 2008, Nature Biotechnology.
[27] J. Reiner,et al. Nanoscopic porous sensors. , 2008, Annual review of analytical chemistry.
[28] J. Rubenstein,et al. Dlx1 and Dlx2 Control Neuronal versus Oligodendroglial Cell Fate Acquisition in the Developing Forebrain , 2007, Neuron.
[29] C. Dekker. Solid-state nanopores. , 2007, Nature nanotechnology.
[30] A. Meller,et al. Rapid Fabrication of Uniformly Sized Nanopores and Nanopore Arrays for Parallel DNA Analysis , 2006 .
[31] A. Bird,et al. Engineering a high-affinity methyl-CpG-binding protein , 2006, Nucleic acids research.
[32] Stephan Beck,et al. From genome to epigenome. , 2005, Human molecular genetics.
[33] P. M. Das,et al. DNA methylation and cancer. , 2004, Journal of clinical oncology : official journal of the American Society of Clinical Oncology.
[34] K. Schulten,et al. Microscopic Kinetics of DNA Translocation through synthetic nanopores. , 2004, Biophysical journal.
[35] Alexander D. MacKerell,et al. Extending the treatment of backbone energetics in protein force fields: Limitations of gas‐phase quantum mechanics in reproducing protein conformational distributions in molecular dynamics simulations , 2004, J. Comput. Chem..
[36] H. Bayley,et al. Functional engineered channels and pores (Review) , 2004, Molecular membrane biology.
[37] H. Ropers,et al. BMC Genomics BioMed Central Research article Comparative study of methyl-CpG-binding domain proteins , 2003 .
[38] G. Strathdee,et al. Aberrant DNA methylation in cancer: potential clinical interventions , 2002, Expert Reviews in Molecular Medicine.
[39] P. Laird,et al. DNA methylation analysis by MethyLight technology. , 2001, Methods.
[40] J. Wood,et al. Interaction of estrogen receptors α and β with estrogen response elements , 2001, Molecular and Cellular Endocrinology.
[41] Christoph Grunau,et al. Bisulfite genomic sequencing: systematic investigation of critical experimental parameters , 2001, Nucleic Acids Res..
[42] J. Herman,et al. DNA methylation, chromatin inheritance, and cancer , 2001, Oncogene.
[43] M. Nakao,et al. Solution Structure of the Methyl-CpG Binding Domain of Human MBD1 in Complex with Methylated DNA , 2001, Cell.
[44] J. Herman,et al. A gene hypermethylation profile of human cancer. , 2001, Cancer research.
[45] P. Laird,et al. MethyLight: a high-throughput assay to measure DNA methylation. , 2000, Nucleic acids research.
[46] Alexander D. MacKerell,et al. All‐atom empirical force field for nucleic acids: I. Parameter optimization based on small molecule and condensed phase macromolecular target data , 2000 .
[47] Alexander D. MacKerell,et al. All-atom empirical potential for molecular modeling and dynamics studies of proteins. , 1998, The journal of physical chemistry. B.
[48] W. Isaacs,et al. CG island methylation changes near the GSTP1 gene in prostatic carcinoma cells detected using the polymerase chain reaction: a new prostate cancer biomarker. , 1997, Cancer epidemiology, biomarkers & prevention : a publication of the American Association for Cancer Research, cosponsored by the American Society of Preventive Oncology.
[49] D. Branton,et al. Characterization of individual polynucleotide molecules using a membrane channel. , 1996, Proceedings of the National Academy of Sciences of the United States of America.
[50] B. Brooks,et al. Constant pressure molecular dynamics simulation: The Langevin piston method , 1995 .
[51] M. Klein,et al. Constant pressure molecular dynamics algorithms , 1994 .
[52] A. Bird,et al. Dissection of the methyl-CpG binding domain from the chromosomal protein MeCP2. , 1993, Nucleic acids research.
[53] W. L. Jorgensen,et al. Comparison of simple potential functions for simulating liquid water , 1983 .
[54] H R Drew,et al. Structure of a B-DNA dodecamer: conformation and dynamics. , 1981, Proceedings of the National Academy of Sciences of the United States of America.
[55] Christine P. Tan,et al. S-1 Supporting Information : Single Molecule Epigenetic Analysis in a Nanofluidic Channel , 2009 .
[56] A. Bird. DNA methylation patterns and epigenetic memory. , 2002, Genes & development.
[57] Peter W. Laird,et al. THE ROLE OF DNA METHYLATION IN CANCER GENETICS AND EPIGENETICS , 1996 .