The epibiotic life of the cosmopolitan diatom Fragilariopsis doliolus on heterotrophic ciliates in the open ocean

[1]  Luis Pedro Coelho,et al.  Quantitative 3D-imaging for cell biology and ecology of environmental microbial eukaryotes , 2017, eLife.

[2]  J. Dolan,et al.  Community Structure of Tintinnid Ciliates of the Microzooplankton in the South West Pacific Ocean: Comparison of a High Primary Productivity with a Typical Oligotrophic Site , 2016, The Journal of eukaryotic microbiology.

[3]  Stéphane Audic,et al.  Insights into global diatom distribution and diversity in the world’s ocean , 2016, Proceedings of the National Academy of Sciences.

[4]  M. Wolf,et al.  18S rDNA phylogeny of Pseudo-nitzschia (Bacillariophyceae) inferred from sequence-structure information , 2016 .

[5]  P. Lerouge,et al.  Diatom-Specific Oligosaccharide and Polysaccharide Structures Help to Unravel Biosynthetic Capabilities in Diatoms , 2015, Marine drugs.

[6]  P. Bork,et al.  Eukaryotic plankton diversity in the sunlit ocean , 2015, Science.

[7]  P. Bork,et al.  Tara Oceans studies plankton at planetary scale , 2015, Science.

[8]  Peer Bork,et al.  Determinants of community structure in the global plankton interactome , 2015, Science.

[9]  Peer Bork,et al.  Open science resources for the discovery and analysis of Tara Oceans data , 2015, Scientific Data.

[10]  D. Sarno,et al.  Diversity and temporal pattern of Pseudo-nitzschia species (Bacillariophyceae) through the molecular lens , 2015 .

[11]  J. Decelle,et al.  Photosymbiosis in Marine Planktonic Protists , 2015 .

[12]  Kazutaka Katoh,et al.  MAFFT: iterative refinement and additional methods. , 2014, Methods in molecular biology.

[13]  P. Deschamps,et al.  Accuracy of protist diversity assessments: morphology compared with cloning and direct pyrosequencing of 18S rRNA genes and ITS regions using the conspicuous tintinnid ciliates as a case study , 2012, The ISME Journal.

[14]  S. Agatha,et al.  The Tintinnid Lorica , 2013 .

[15]  L. Santoferrara,et al.  Utility of genetic markers and morphology for species discrimination within the order Tintinnida (Ciliophora, Spirotrichea). , 2013, Protist.

[16]  L. F. Fernandes,et al.  Morphology and distribution of two epizoic diatoms (Bacillariophyta) in Brazil , 2012 .

[17]  D. Moreira,et al.  Molecular phylogeny of tintinnid ciliates (Tintinnida, Ciliophora). , 2012, Protist.

[18]  L. Santoferrara,et al.  Tintinnids in Microzooplankton Communities , 2012 .

[19]  Ramón Doallo,et al.  CircadiOmics: integrating circadian genomics, transcriptomics, proteomics and metabolomics , 2012, Nature Methods.

[20]  Johannes E. Schindelin,et al.  Fiji: an open-source platform for biological-image analysis , 2012, Nature Methods.

[21]  P. Bork,et al.  A Holistic Approach to Marine Eco-Systems Biology , 2011, PLoS biology.

[22]  Regine Jahn,et al.  Barcoding diatoms: evaluation of the V4 subregion on the 18S rRNA gene, including new primers and protocols , 2011, Organisms Diversity & Evolution.

[23]  M. Kuypers,et al.  Nitrogen fixation and transfer in open ocean diatom–cyanobacterial symbioses , 2011, The ISME Journal.

[24]  D. Moreira,et al.  Solenicola setigera is the first characterized member of the abundant and cosmopolitan uncultured marine stramenopile group MAST-3. , 2010, Environmental microbiology.

[25]  R. Jansen,et al.  A preliminary multi gene phylogeny of the diatoms (Bacillariophyta): Challenges for future research , 2010 .

[26]  J. Dolan Morphology and Ecology in Tintinnid Ciliates of the Marine Plankton: Correlates of Lorica Dimensions , 2010 .

[27]  O. Gascuel,et al.  New algorithms and methods to estimate maximum-likelihood phylogenies: assessing the performance of PhyML 3.0. , 2010, Systematic biology.

[28]  Susan M. Huse,et al.  A Method for Studying Protistan Diversity Using Massively Parallel Sequencing of V9 Hypervariable Regions of Small-Subunit Ribosomal RNA Genes , 2009, PloS one.

[29]  I. Gárate-Lizárraga,et al.  PRIMER REGISTRO DE LA DIATOMEA EPIBIONTE PSEUDOHIMANTIDIUM PACIFICUM Y DE OTRAS ASOCIACIONES SIMBIÓTICAS EN EL GOLFO DE CALIFORNIA , 2009 .

[30]  K. Nagasaki,et al.  Isolation and Characterization of a Single-Stranded RNA Virus Infecting the Bloom-Forming Diatom Chaetoceros socialis , 2009, Applied and Environmental Microbiology.

[31]  D. Fujita,et al.  Serial replacement of diatom endosymbionts in two freshwater dinoflagellates, Peridiniopsis spp. (Peridiniales, Dinophyceae) , 2008 .

[32]  S. M. McDonald,et al.  Identifying Pseudo-nitzschia species in natural samples using genus-specific PCR primers and clone libraries , 2007 .

[33]  Gerard Talavera,et al.  Improvement of phylogenies after removing divergent and ambiguously aligned blocks from protein sequence alignments. , 2007, Systematic biology.

[34]  L. Artigas,et al.  The colonization of two Phaeocystis species ( Prymnesiophyceae ) by pennate diatoms and other protists: a significant contribution to colony biomass , 2007 .

[35]  F. Gómez On the consortium of the tintinnid Eutintinnus and the diatom Chaetoceros in the Pacific Ocean , 2007 .

[36]  L. Artigas,et al.  The colonization of two Phaeocystis species (Prymnesiophyceae) by pennate diatoms and other protists: a significant contribution to colony biomass , 2007 .

[37]  P. Verity,et al.  Phaeocystis, major link in the biogeochemical cycling of climate-relevant elements , 2007 .

[38]  C. Berney,et al.  Molecular identification of diatom endosymbionts in nummulitid Foraminifera , 2006 .

[39]  J. Ehrman,et al.  Diversity and distribution of epibiotic bacteria on Pseudo-nitzschia multiseries (Bacillariophyceae) in culture, and comparison with those on diatoms in native seawater , 2005 .

[40]  P. Jonsson,et al.  Attachment to suspended particles may improve foraging and reduce predation risk for tintinnid ciliates , 2004 .

[41]  A. Warren,et al.  Redescription of Vorticella oceanica Zacharias, 1906 (Ciliophora: Peritrichia) with notes on its host, the marine planktonic diatom Chaetoceros coarctatum Lauder,1864 , 1996, Hydrobiologia.

[42]  F. Morel,et al.  The Biogeochemical Cycles of Trace Metals in the Oceans , 2003, Science.

[43]  P. Falkowski The ocean's invisible forest. , 2002, Scientific American.

[44]  H. Claustre,et al.  Microzooplankton diversity: relationships of tintinnid ciliates with resources, competitors and predators from the Atlantic Coast of Morocco to the Eastern Mediterranean , 2002 .

[45]  F. Carlottib,et al.  Microzooplankton diversity : relationships of tintinnid ciliates with resources , competitors and predators from the Atlantic Coast of Morocco to the Eastern Mediterranean , 2002 .

[46]  Jonathan P. Bollback,et al.  Bayesian Inference of Phylogeny and Its Impact on Evolutionary Biology , 2001, Science.

[47]  K. Crandall,et al.  TCS: a computer program to estimate gene genealogies , 2000, Molecular ecology.

[48]  E. Schnepf,et al.  Dinophyte chloroplasts and phylogeny - A review , 1999 .

[49]  J. Randerson,et al.  Primary production of the biosphere: integrating terrestrial and oceanic components , 1998, Science.

[50]  P. Froneman,et al.  OBSERVATIONS ON THE ASSOCIATION BETWEEN THE DIATOM, FRAGILARIOPSIS DOLIOLUS WALLICH, AND THE TINTINNID, SALPINGELLA SUBCONICA KAFOID , 1998 .

[51]  V. Smetácek Biological oceanography: Diatoms and the silicate factor , 1998, Nature.

[52]  A. Wąsik,et al.  Agglutinated loricae of some Baltic and Antarctic Tintinnina species (Ciliophora) , 1996 .

[53]  D. M. Nelson,et al.  Production and dissolution of biogenic silica in the ocean: Revised global estimates, comparison with regional data and relationship to biogenic sedimentation , 1995 .

[54]  L. Medlin,et al.  The transfer of Pseudoeunotia doliolus to Fragilariopsis , 1993 .

[55]  D. Garrison,et al.  Abundance and feeding ecology of larger protozooplankton in the ice edge zone of the Weddell and Scotia Seas during the austral winter , 1992 .

[56]  David G. Mann,et al.  Diatoms: Biology and Morphology of the Genera , 1990 .

[57]  D. C. Brownlee,et al.  Identification and systematics of the Tintinnina (Ciliophora): evaluation and suggestions for improvement , 1986 .

[58]  P. Verity,et al.  The relative food value of diatoms, dinoflagellates, flagellates, and cyanobacteria for tintinnid ciliates , 1986 .

[59]  M. Pavillard Observations sur les Diatomées [2e série] , 1914 .