Supercoiled Protein Motifs: The Collagen Triple-Helix and the α-Helical Coiled Coil

The collagen triple-helix and the alpha-helical coiled coil represent the two basic supercoiled multistranded protein motifs. Originally they were characterized in fibrous proteins, but have been found more recently in a number of other proteins containing rod-shaped domains. Coiled-coil domains are responsible for the oligomerization of proteins, as well as other specific functions, while the triple-helix domains associate to form supramolecular structures and bind a variety of ligands. Both structures were originally solved by fiber diffraction, and recent crystallographic studies on small proteins and peptide models have confirmed the structure and provided molecular details. The differences in the molecular conformations of these two motifs and the interactions stabilizing these conformations are discussed. The molecular structures of both motifs constrain the amino acid sequence to recognizable patterns, requiring the (Gly-X-Y)n repeating sequence for the collagen triple-helix and a less stringent heptad repeat requirement (h-x-x-h-x-x-x)n for the coiled-coil domains, where h represents hydrophobic residues. The features and roles of these supercoiled domains in proteins are considered when they are found adjacent in the same protein.

[1]  C. Legay,et al.  Primary structure of a collagenic tail peptide of Torpedo acetylcholinesterase: co‐expression with catalytic subunit induces the production of collagen‐tailed forms in transfected cells. , 1991, The EMBO journal.

[2]  J. Kondo,et al.  Identification of novel blood proteins specific for mammalian hibernation. , 1992, The Journal of biological chemistry.

[3]  M. Krieger,et al.  Structures of Class A Macrophage Scavenger Receptors , 1996, The Journal of Biological Chemistry.

[4]  I. Thesleff,et al.  Cloning of a novel bacteria-binding receptor structurally related to scavenger receptors and expressed in a subset of macrophages , 1995, Cell.

[5]  L. Pauling,et al.  The structure of fibrous proteins of the collagen-gelatin group. , 1951, Proceedings of the National Academy of Sciences of the United States of America.

[6]  K. Okuyama,et al.  Crystal and molecular structure of a collagen-like polypeptide (Pro-Pro-Gly)10. , 1981, Journal of molecular biology.

[7]  R. Hodges,et al.  Amino-acid sequence of rabbit skeletal tropomyosin and its coiled-coil structure. , 1972, Proceedings of the National Academy of Sciences of the United States of America.

[8]  H M Berman,et al.  Hydration structure of a collagen peptide. , 1995, Structure.

[9]  J. Engel,et al.  The zipper-like folding of collagen triple helices and the effects of mutations that disrupt the zipper. , 1991, Annual review of biophysics and biophysical chemistry.

[10]  W. Stetler-Stevenson,et al.  Fungal fimbriae are composed of collagen. , 1996, The EMBO journal.

[11]  J. Engel,et al.  The triple helix ⇌ coil conversion of collagen‐like polytripeptides in aqueous and nonaqueous solvents. Comparison of the thermodynamic parameters and the binding of water to (L‐Pro‐L‐Pro‐Gly)n and (L‐Pro‐L‐Hyp‐Gly)n , 1977 .

[12]  S. Peltonen,et al.  Characterization of Human Type III Collagen Expressed in a Baculovirus System , 1996, The Journal of Biological Chemistry.

[13]  L. Pauling,et al.  The structure of hair, muscle, and related proteins. , 1951, Proceedings of the National Academy of Sciences of the United States of America.

[14]  E. Blout,et al.  Single-chain triple helical structure. , 1968, Biopolymers.

[15]  V. Malashkevich,et al.  The Crystal Structure of a Five-Stranded Coiled Coil in COMP: A Prototype Ion Channel? , 1996, Science.

[16]  N. Brockdorff,et al.  Cloning of Tabby, the murine homolog of the human EDA gene: evidence for a membrane-associated protein with a short collagenous domain. , 1997, Human molecular genetics.

[17]  F. Crick,et al.  The molecular structure of collagen. , 1961, Journal of molecular biology.

[18]  R. Fraser,et al.  Chain conformation in the collagen molecule. , 1979, Journal of molecular biology.

[19]  A. Lupas,et al.  Predicting coiled coils from protein sequences , 1991, Science.

[20]  D. Bamford,et al.  Capsomer proteins of bacteriophage PRD1, a bacterial virus with a membrane. , 1990, Virology.

[21]  R. Timpl,et al.  Cell adhesion, spreading and neurite stimulation by laminin fragment E8 depends on maintenance of secondary and tertiary structure in its rod and globular domain. , 1990, European journal of biochemistry.

[22]  K. Miyazono,et al.  Molecular cloning and characterization of ficolin, a multimeric protein with fibrinogen- and collagen-like domains. , 1993, The Journal of biological chemistry.

[23]  R. Kammerer Alpha-helical coiled-coil oligomerization domains in extracellular proteins. , 1997, Matrix biology : journal of the International Society for Matrix Biology.

[24]  D. Prockop,et al.  Perspectives on the synthesis and application of triple-helical, collagen-model peptides. , 1996, Biopolymers.

[25]  R. Stern,et al.  A collagenous sequence in a prokaryotic hyaluronidase. , 1992, Molecular biology and evolution.

[26]  F. Crick,et al.  The packing of α‐helices: simple coiled‐coils , 1953 .

[27]  B. Drees,et al.  The GCN4 leucine zipper can functionally substitute for the heat shock transcription factor's trimerization domain. , 1997, Journal of molecular biology.

[28]  Tom Alber,et al.  Crystal structure of an isoleucine-zipper trimer , 1994, Nature.

[29]  N. Bulleid,et al.  Identification of the molecular recognition sequence which determines the type‐specific assembly of procollagen , 1997, The EMBO journal.

[30]  Hansjörg Hoppe,et al.  Collectins — soluble proteins containing collagenous regions and lectin domains — and their roles in innate immunity , 1994, Protein science : a publication of the Protein Society.

[31]  J. Baum,et al.  Real-time NMR investigations of triple-helix folding and collagen folding diseases. , 1997, Folding & design.

[32]  L. Diaz,et al.  A recombinant form of the human BP180 ectodomain forms a collagen-like homotrimeric complex. , 1997, Biochemistry.

[33]  D. Parry Coiled-coils in α-helix-containing proteins: analysis of the residue types within the heptad repeat and the use of these data in the prediction of coiled-coils in other proteins , 1982, Bioscience reports.

[34]  T. Funahashi,et al.  cDNA cloning and expression of a novel adipose specific collagen-like factor, apM1 (AdiPose Most abundant Gene transcript 1). , 1996, Biochemical and biophysical research communications.

[35]  E. Fey,et al.  Phylogenetic occurrence of coiled coil proteins: Implications for tissue structure in metazoa via a coiled coil tissue matrix , 1996, Proteins.

[36]  G. Phillips,et al.  Structure of tropomyosin at 9 angstroms resolution. , 1992, Journal of molecular biology.

[37]  M. Krieger,et al.  Molecular flypaper, host defense, and atherosclerosis. Structure, binding properties, and functions of macrophage scavenger receptors. , 1993, The Journal of biological chemistry.

[38]  M. O'connor,et al.  Ciba Foundation Symposium : principles of biomolecular organization , 1966 .

[39]  D. Parry,et al.  Heptad breaks in α‐helical coiled coils: Stutters and stammers , 1996 .

[40]  F. Kőrösy A Modified Differential Refractometer , 1954, Nature.

[41]  S. Sheriff,et al.  Human mannose-binding protein carbohydrate recognition domain trimerizes through a triple α-helical coiled-coil , 1994, Nature Structural Biology.

[42]  Murray Goodman,et al.  A Template-Induced Incipient Collagen-Like Triple-Helical Structure , 1996 .

[43]  D. Branton,et al.  Crystal structure of the repetitive segments of spectrin. , 1993, Science.

[44]  K. Kadler Extracellular matrix 1: Fibril-forming collagens. , 1995, Protein profile.

[45]  K. Holmes,et al.  X-ray diffraction evidence for α-helical coiled-coils in native muscle , 1963 .

[46]  D A Parry,et al.  Analysis of the three-alpha-helix motif in the spectrin superfamily of proteins. , 1992, Biophysical journal.

[47]  M. Snyder,et al.  NuMA: an unusually long coiled-coil related protein in the mammalian nucleus , 1992, The Journal of cell biology.

[48]  J. Engel,et al.  Evidence for a specific mechanism of laminin assembly. , 1990, European journal of biochemistry.

[49]  T. Dixon,et al.  Ionic interactions in the coiled-coil domain of laminin determine the specificity of chain assembly. , 1993, Journal of molecular biology.

[50]  W. Weis,et al.  Trimeric structure of a C-type mannose-binding protein. , 1994, Structure.

[51]  H. Erickson,et al.  Two Oligomeric Forms of Plasma Ficolin Have Differential Lectin Activity* , 1997, The Journal of Biological Chemistry.

[52]  B. Brodsky,et al.  Altered collagen structure in mouse tail tendon lacking the α2(I) chain , 1997 .

[53]  K. Doege,et al.  Folding of carboxyl domain and assembly of procollagen I. , 1986, The Journal of biological chemistry.

[54]  C. Mant,et al.  α-Helical Protein Assembly Motifs* , 1997, The Journal of Biological Chemistry.

[55]  K. Beck,et al.  A single amino acid can switch the oligomerization state of the α‐helical coiled‐coil domain of cartilage matrix protein , 1997, The EMBO journal.

[56]  G. N. Ramachandran,et al.  Structure of Collagen , 1954, Nature.

[57]  M. McPherson,et al.  Collagen‐like sequences stabilize homotrimers of a bacterial hydrolase. , 1988, The EMBO journal.

[58]  P. S. Kim,et al.  A switch between two-, three-, and four-stranded coiled coils in GCN4 leucine zipper mutants. , 1993, Science.

[59]  K. Beck,et al.  Triple Helix Formation of Procollagen Type I Can Occur at the Rough Endoplasmic Reticulum Membrane* , 1996, The Journal of Biological Chemistry.

[60]  H M Berman,et al.  Crystal and molecular structure of a collagen-like peptide at 1.9 A resolution. , 1994, Science.

[61]  A. Lupas Coiled coils: new structures and new functions. , 1996, Trends in biochemical sciences.

[62]  R. Bear,et al.  HELICAL POLYPEPTIDE CHAIN CONFIGURATION IN COLLAGEN1 , 1953 .

[63]  H. Hurst Transcription factors 1: bZIP proteins. , 1995, Protein profile.

[64]  Tobin R. Sosnick,et al.  The role of helix formation in the folding of a fully α‐helical coiled coil , 1996 .

[65]  P. Privalov Stability of proteins. Proteins which do not present a single cooperative system. , 1982, Advances in protein chemistry.

[66]  J. Ramshaw,et al.  Positional Preferences of Ionizable Residues in Gly-X-YTriplets of the Collagen Triple-helix* , 1997, The Journal of Biological Chemistry.

[67]  L. Pauling,et al.  Compound Helical Configurations of Polypeptide Chains: Structure of Proteins of the α-Keratin Type , 1953, Nature.

[68]  R. Kammerer,et al.  Tenascin-C Hexabrachion Assembly Is a Sequential Two-step Process Initiated by Coiled-coil α-Helices* , 1998, The Journal of Biological Chemistry.

[69]  R. Garrone,et al.  Biology of Invertebrate and Lower Vertebrate Collagens , 2012, NATO ASI Series.

[70]  K. Mayo,et al.  NMR and x-ray studies of collagen model peptides. , 1996, Biopolymers.

[71]  M. Freeman,et al.  Type I macrophage scavenger receptor contains α-helical and collagen-like coiled coils , 1990, Nature.

[72]  J. Sanes,et al.  Molecular Cloning of a Novel Laminin Chain, α5, and Widespread Expression in Adult Mouse Tissues (*) , 1995, The Journal of Biological Chemistry.

[73]  William Thomas Astbury,et al.  Croonian Lecture: On the Structure of Biological Fibres and the Problem of Muscle , 1947 .

[74]  H. Kuivaniemi,et al.  Mutations in fibrillar collagens (types I, II, III, and XI), fibril‐associated collagen (type IX), and network‐forming collagen (type X) cause a spectrum of diseases of bone, cartilage, and blood vessels , 1997, Human mutation.

[75]  J. Baum,et al.  Direct NMR measurement of folding kinetics of a trimeric peptide. , 1996, Biochemistry.

[76]  M. Ow,et al.  Helix-coil transition in collagen. Evidence for a single-stranded triple helix. , 1967 .

[77]  A. Lupas,et al.  Predicting coiled-coil regions in proteins. , 1997, Current opinion in structural biology.

[78]  P. Barlow,et al.  A parallel three stranded α‐helical bundle at the nucleation site of collagen triple‐helix formation , 1994, FEBS letters.