Resonant Mie scattering (RMieS) correction applied to FTIR images of biological tissue samples.

Recently a resonant Mie scattering (RMieS) correction approach has been developed and demonstrated to be effective for removing the baseline distortions that compromise the raw data in individual spectra. In this paper RMieS correction is extended to FTIR images of a tissue section from biopsy of the human cervical transformation zone and a coronal tissue section of a Wistar rat brain and compared to the uncorrected images. It is shown that applying RMieS correction to FTIR images a) removes baseline distortions from the image spectra and thus reveals previously hidden information on spatial variation of chemical contents within the tissue and b) can lead to improved automatic tissue feature classification through multivariate cluster analysis.

[1]  I. Dixon,et al.  Fourier transform infrared evaluation of microscopic scarring in the cardiomyopathic heart: effect of chronic AT1 suppression. , 2003, Analytical biochemistry.

[2]  H. Martens,et al.  Light scattering and light absorbance separated by extended multiplicative signal correction. application to near-infrared transmission analysis of powder mixtures. , 2003, Analytical chemistry.

[3]  Harald Martens,et al.  RMieS‐EMSC correction for infrared spectra of biological cells: Extension using full Mie theory and GPU computing , 2010, Journal of biophotonics.

[4]  Hugh J. Byrne,et al.  Resonant Mie scattering (RMieS) correction of infrared spectra from highly scattering biological samples. , 2010, The Analyst.

[5]  G. Mie Beiträge zur Optik trüber Medien, speziell kolloidaler Metallösungen , 1908 .

[6]  P H Watson,et al.  Beware of connective tissue proteins: assignment and implications of collagen absorptions in infrared spectra of human tissues. , 1995, Biochimica et biophysica acta.

[7]  M. Diem,et al.  Fourier transform infrared (FTIR) spectral mapping of the cervical transformation zone, and dysplastic squamous epithelium. , 2004, Gynecologic oncology.

[8]  A. Lajtha,et al.  Protein content of various regions of rat brain and adult and aging human brain , 1992, AGE.

[9]  K. Bambery,et al.  A Fourier transform infrared microspectroscopic imaging investigation into an animal model exhibiting glioblastoma multiforme. , 2006, Biochimica et biophysica acta.

[10]  A. Kohler,et al.  Estimating and Correcting Mie Scattering in Synchrotron-Based Microscopic Fourier Transform Infrared Spectra by Extended Multiplicative Signal Correction , 2008, Applied spectroscopy.

[11]  Christoph Krafft,et al.  Classification of malignant gliomas by infrared spectroscopy and linear discriminant analysis. , 2006, Biopolymers.

[12]  M. Diem,et al.  Infrared spectroscopy of human cells and tissue. VIII. Strategies for analysis of infrared tissue mapping data and applications to liver tissue. , 2000, Biopolymers.

[13]  I. S. Saidi,et al.  Mie and Rayleigh modeling of visible-light scattering in neonatal skin. , 1995, Applied optics.

[14]  H. Mantsch,et al.  The use and misuse of FTIR spectroscopy in the determination of protein structure. , 1995, Critical reviews in biochemistry and molecular biology.

[15]  Francis L Martin,et al.  Syrian hamster embryo (SHE) assay (pH 6.7) coupled with infrared spectroscopy and chemometrics towards toxicological assessment. , 2010, The Analyst.

[16]  J Dwyer,et al.  Applications of Fourier transform infrared microspectroscopy in studies of benign prostate and prostate cancer. A pilot study , 2003, The Journal of pathology.

[17]  K. Bambery,et al.  Fourier Transform Infrared Imaging and Unsupervised Hierarchical Clustering Applied to Cervical Biopsies , 2004 .

[18]  P Lasch,et al.  Detection of pathological molecular alterations in scrapie-infected hamster brain by Fourier transform infrared (FT-IR) spectroscopy. , 2000, Biochimica et biophysica acta.

[19]  Peter Lasch,et al.  Characterization of Colorectal Adenocarcinoma Sections by Spatially Resolved FT-IR Microspectroscopy , 2002 .

[20]  Francis L Martin,et al.  Distinguishing cell types or populations based on the computational analysis of their infrared spectra , 2010, Nature Protocols.

[21]  G. Gouspillou,et al.  Collagen types analysis and differentiation by FTIR spectroscopy , 2009, Analytical and bioanalytical chemistry.

[22]  Peter Lasch,et al.  Infrared microspectroscopic imaging of benign breast tumor tissue sections , 2003 .

[23]  Paul Dumas,et al.  Resonant Mie scattering in infrared spectroscopy of biological materials--understanding the 'dispersion artefact'. , 2009, The Analyst.

[24]  Paul Dumas,et al.  Reflection contributions to the dispersion artefact in FTIR spectra of single biological cells. , 2009, The Analyst.

[25]  Max Diem,et al.  Artificial neural networks as supervised techniques for FT‐IR microspectroscopic imaging , 2006, Journal of chemometrics.