Sensors for observing ecosystem status

Abstract. This paper aims to review the availability and application of sensors for observing marine ecosystem status. It gives a broad overview of important ecosystem variables to be investigated, such as biogeochemical cycles, primary and secondary production, species distribution, animal movements, habitats and pollutants. Some relevant legislative drivers are listed, as they provide one context in which ecosystem studies are undertaken. In addition to literature cited within the text the paper contains some useful web links to assist the reader in making an informed instrument choice, as the authors feel that the topic is so broad, it is impossible to discuss all relevant systems or to provide appropriate detail for those discussed. It is therefore an introduction to how and why ecosystem status is currently observed, what variables are quantified, from what platforms, using remote sensing or in-situ measurements, and gives examples of useful sensor based tools. Starting with those presently available, to those under development and also highlighting sensors not yet realised but desirable for future studies.

[1]  Julian D. Metcalfe,et al.  migratory behaviour of the thornback ray, raja clavata, in the southern north sea , 2005, Journal of the Marine Biological Association of the United Kingdom.

[2]  R. Rosenberg,et al.  In situ quantification of bioturbation using time-lapse fluorescent sediment profile imaging (f-SPI), luminophore tracers and model simulation , 2004 .

[3]  M. Winson,et al.  The construction and application of a lux‐based nitrate biosensor , 1997, Letters in applied microbiology.

[4]  F. Scheller,et al.  Amperometric nitrate biosensors on the basis of Pseudomonas stutzeri nitrate reductase , 1999 .

[5]  A. Harashima,et al.  Verification of the silica deficiency hypothesis based on biogeochemical trends in the aquatic continuum of Lake Biwa-Yodo River-Seto Inland Sea, Japan. , 2006 .

[6]  Joseph Wang,et al.  Electrochemical nucleic acid biosensors , 2002 .

[7]  M. Loughran,et al.  Use of a channel biosensor for the assay of paralytic shellfish toxins. , 1998, Toxicon : official journal of the International Society on Toxinology.

[8]  G. Palleschi,et al.  Development of an electrochemical ELISA for the screening of 17 beta-estradiol and application to bovine serum. , 2000, The Analyst.

[9]  Sergey Piletsky,et al.  Biosensors for marine pollution research, monitoring and control. , 2002, Marine pollution bulletin.

[10]  Claude Durrieu,et al.  Optical whole-cell biosensor using Chlorella vulgaris designed for monitoring herbicides. , 2003, Biosensors & bioelectronics.

[11]  Ingo Klimant,et al.  Planar optrodes: a new tool for fine scale measurements of two-dimensional O2 distribution in benthic communities , 1996 .

[12]  Kagan Kerman,et al.  Recent trends in electrochemical DNA biosensor technology , 2004 .

[13]  I. Hewson,et al.  Molecular biology techniques and applications for ocean sensing , 2008 .

[14]  S. Jennings,et al.  Nematode community dynamics over an annual production cycle in the central North Sea. , 2008, Marine environmental research.

[15]  D. Rhoads,et al.  Characterization of Organism-Sediment Relations Using Sediment Profile Imaging: An Efficient Method of Remote Ecological Monitoring of the Seafloor (Remots System) , 1982 .

[16]  R. Renneberg,et al.  A screen-printed biosensor using pyruvate oxidase for rapid determination of phosphate in synthetic wastewater , 2004, Applied Microbiology and Biotechnology.

[17]  S O Engblom,et al.  The phosphate sensor. , 1998, Biosensors & bioelectronics.

[18]  M. Campàs,et al.  DNA biochip arraying, detection and amplification strategies , 2004 .

[19]  B. Jørgensen,et al.  High‐resolution metal gradients measured by in situ DGT/DET deployment in Black Sea sediments using an autonomous benthic lander , 2001 .

[20]  T. G. Drummond,et al.  Electrochemical DNA sensors , 2003, Nature Biotechnology.

[21]  E. Urban Watersheds, bays, and bounded seas: The science and management of semi-enclosed marine systems , 2009 .

[22]  Smith,et al.  NOT TO BE CITED WITHOUT PRIOR REFERENCE TO THE AUTHORS ICES CM 2007 / G : 07 Environmental variables and their influence on growth of the great scallop ( Pecten maximus ) in the English Channel , 2007 .

[23]  Man Bock Gu,et al.  Enhancement in the sensitivity of an immobilized cell-based soil biosensor for monitoring PAH toxicity , 2004 .

[24]  P. Picart,et al.  Development of a biosensor for on-line detection of tributyltin with a recombinant bioluminescent Escherichia coli strain , 2003, Applied Microbiology and Biotechnology.

[25]  G G Guilbault,et al.  Disposable amperometric immunosensor for the detection of polycyclic aromatic hydrocarbons (PAHs) using screen-printed electrodes. , 2003, Biosensors & bioelectronics.

[26]  B. Block,et al.  Advances in acoustic, archival, and satellite tagging of tunas , 2001 .

[27]  Katja Metfies,et al.  Development and adaptation of a multiprobe biosensor for the use in a semi-automated device for the detection of toxic algae. , 2008, Biosensors & bioelectronics.

[28]  Juewen Liu,et al.  New highly sensitive and selective catalytic DNA biosensors for metal ions. , 2003, Biosensors & bioelectronics.

[29]  R. O'Kennedy,et al.  Advances in biosensors for detection of pathogens in food and water , 2003 .

[30]  D. Woolf,et al.  A regional analysis of new production on the northwest European shelf using oxygen fluxes and a ship-of-opportunity , 2006 .

[31]  David W. Sims,et al.  Seasonal movements and behaviour of basking sharks from archival tagging: no evidence of winter hibernation , 2003 .

[32]  J. Metcalfe,et al.  An Archival Tag for Monitoring Key Behaviours (Feeding and Spawning) in Fish , 2009 .

[33]  N. Kulagina,et al.  Detection of marine toxins, brevetoxin-3 and saxitoxin, in seawater using neuronal networks. , 2006, Environmental science & technology.

[34]  G. Palleschi,et al.  A bienzyme electrochemical probe for flow injection analysis of okadaic acid based on protein phosphatase-2A inhibition: an optimization study. , 2009, Analytical biochemistry.

[35]  E. Paleček,et al.  Electrochemistry of Nucleic Acids and Development of DNA Sensors , 2002 .

[36]  W. Meadows,et al.  Lights, camera and acoustics: Assessing macrobenthic communities at a dredged material disposal site off the North East coast of the UK , 2006 .

[37]  Miguel Ángel López,et al.  Amperometric immunosensors and enzyme electrodes for environmental applications , 1998 .

[38]  F. Gohin,et al.  A five channel chlorophyll concentration algorithm applied to SeaWiFS data processed by SeaDAS in coastal waters , 2002 .

[39]  Anne Kahru,et al.  Construction and use of specific luminescent recombinant bacterial sensors for the assessment of bioavailable fraction of cadmium, zinc, mercury and chromium in the soil , 2002 .

[40]  L. Kerkhof,et al.  Characterization of Nitrifying, Denitrifying, and Overall Bacterial Communities in Permeable Marine Sediments of the Northeastern Gulf of Mexico , 2008, Applied and Environmental Microbiology.

[41]  Hao Zhang,et al.  Diffusional characteristics of hydrogels used in DGT and DET techniques , 1999 .

[42]  Stefan Sommer,et al.  Evaluation of a lifetime‐based optode to measure oxygen in aquatic systems , 2006 .

[43]  Satoshi Takamatsu,et al.  Amperometric screen-printed algal biosensor with flow injection analysis system for detection of environmental toxic compounds , 2009 .

[44]  M. Huxham,et al.  Defining and detecting undesirable disturbance in the context of marine eutrophication. , 2007, Marine pollution bulletin.

[45]  Claude Durrieu,et al.  Development of novel conductometric biosensors based on immobilised whole cell Chlorella vulgaris microalgae. , 2004, Biosensors & bioelectronics.

[46]  N. Revsbech,et al.  Bacterium-Based NO2− Biosensor for Environmental Applications , 2004, Applied and Environmental Microbiology.

[47]  J. D. Metcalfe Summary Report of a Workshop on Daylight Measurements for Geolocation in Animal Telemetry , 2001 .

[48]  J. Metcalfe,et al.  Seasonal migration of thornback rays and implications for closure management , 2006 .

[49]  C Barzen,et al.  Fast determination of paraquat residues in water by an optical immunosensor and validation using capillary electrophoresis-ultraviolet detection , 2001 .

[50]  Miloslav Pravda,et al.  Novel electrochemical immunosensors for seafood toxin analysis. , 2002, Toxicon : official journal of the International Society on Toxinology.

[51]  R. Rosenberg,et al.  Macrobenthic succession in relation to organic enrichment and pollution of the marine environment , 1978 .

[52]  Claude Durrieu,et al.  A bi-enzymatic whole cell conductometric biosensor for heavy metal ions and pesticides detection in water samples. , 2005, Biosensors & bioelectronics.

[53]  D. Righton,et al.  Migration and habitat choice in marine fishes , 2008 .

[54]  J. Justin Gooding,et al.  Electrochemical DNA Hybridization Biosensors , 2002 .

[55]  W. Gregg,et al.  Global and regional evaluation of the SeaWiFS chlorophyll data set , 2004 .

[56]  Norio Miura,et al.  Highly sensitive detection of polycyclic aromatic hydrocarbons (PAHs) and association constants of the interaction between PAHs and antibodies using surface plasmon resonance immunosensor , 2003 .

[57]  I Karube,et al.  Application of nitrite reductase from Alcaligenes faecalis S-6 for nitrite measurement. , 1998, Biosensors & bioelectronics.

[58]  K. Takayama Biocatalyst electrode modified with whole-cells of P. denitrificans for the determination of nitrate , 1998 .

[59]  Robin J Law,et al.  Sensing the sea. , 2005, Trends in biotechnology.

[60]  Christopher J. Smith,et al.  Towards a greater understanding of pattern, scale and process in marine benthic systems: a picture is worth a thousand worms , 2003 .

[61]  J. Metcalfe Fish population structuring in the North Sea: understanding processes and mechanisms from studies of the movements of adults , 2006 .

[62]  S. Carlberg,et al.  The 1994 QUASIMEME Laboratory Performance Study: Nutrients in seawater and standard solutions , 1994 .

[63]  Fu Weiling,et al.  A new sandwich-type assay of estrogen using piezoelectric biosensor immobilized with estrogen response element , 1999 .

[64]  M. Akeson,et al.  Biosensors for DNA sequence detection. , 2002, Current opinion in chemical biology.

[65]  Christophe A. Marquette,et al.  Semi-automated membrane based chemiluminescent immunosensor for flow injection analysis of okadaic acid in mussels , 1999 .

[66]  K. Schleifer,et al.  Application of Recognition of Individual Genes-Fluorescence In Situ Hybridization (RING-FISH) To Detect Nitrite Reductase Genes (nirK) of Denitrifiers in Pure Cultures and Environmental Samples , 2008, Applied and Environmental Microbiology.

[67]  Jean-Louis Marty,et al.  Detection of Anatoxin-a(s) in Environmental Samples of Cyanobacteria by Using a Biosensor with Engineered Acetylcholinesterases , 2002, Applied and Environmental Microbiology.

[68]  David R. Walt,et al.  Fluorescence-based nucleic acid detection and microarrays , 2002 .

[69]  T. Rynearson,et al.  Spring bloom development, genetic variation, and population succession in the planktonic diatom Ditylum brightwellii , 2006 .

[70]  Charles R. Martin,et al.  Nitrate Biosensor Based on the Ultrathin-Film Composite Membrane Concept , 1998 .

[71]  C. A. Scholin,et al.  What are "ecogenomic sensors?" A review and thoughts for the future , 2009 .

[72]  D. A. Russell,et al.  Optical Biosensing of Nitrate Ions Using a Sol–Gel Immobilized Nitrate Reductase , 1997 .

[73]  N. Revsbech,et al.  A Microscale NO(3)(-) Biosensor for Environmental Applications. , 1997, Analytical chemistry.

[74]  Grish C. Varshney,et al.  Immunosensors for Pesticide Analysis: Antibody Production and Sensor Development , 2002, Critical reviews in biotechnology.

[75]  Determination of Toxic Substances Based on Enzyme Inhibition. Part I. Electrochemical Biosensors for the Determination of Pesticides Using Batch Procedures , 2003 .

[76]  I. Tothill,et al.  Development of urease and glutamic dehydrogenase amperometric assay for heavy metals screening in polluted samples. , 2004, Biosensors & bioelectronics.

[77]  J. Metcalfe,et al.  Tracking fish with electronic tags , 1997, Nature.

[78]  Maria Pesavento,et al.  Immunoelectrochemical Biosensors for Detection of Saxitoxin and Brevetoxin , 1993 .

[79]  Jon Barry,et al.  Relationships between suspended particulate material, light attenuation and Secchi depth in UK marine waters , 2008 .

[80]  Julian D. Metcalfe,et al.  Geolocation of free-ranging fish on the European continental shelf as determined from environmental variables , 2003 .

[81]  F. Mbeunkui,et al.  Bioavailable nitrate detection in water by an immobilized luminescent cyanobacterial reporter strain , 2002, Applied Microbiology and Biotechnology.

[82]  Detection of Phytoplankton with Nucleic Acid Sensors , 2007 .

[83]  D. Barceló,et al.  Immunosensor for trace determination of Irgarol 1051 in seawater using organic media , 1999 .

[84]  G. Ramsay,et al.  Utility of wiring nitrate reductase by alkylpyrroleviologen-based redox polymers for electrochemical biosensor and bioreactor applications. , 1999, Analytical chemistry.

[85]  J. Kromkamp,et al.  Estimating phytoplankton primary production in Lake IJsselmeer (The Netherlands) using variable fluorescence (PAM-FRRF) and C-uptake techniques , 2008 .

[86]  Arben Merkoçi,et al.  Determination of Toxic Substances Based on Enzyme Inhibition. Part II. Electrochemical Biosensors for the Determination of Pesticides Using Flow Systems , 2003 .

[87]  E. Virginia Armbrust,et al.  GENETIC DIFFERENTIATION AMONG POPULATIONS OF THE PLANKTONIC MARINE DIATOM DITYLUM BRIGHTWELLII (BACILLARIOPHYCEAE) 1 , 2004 .

[88]  Development of a highly sensitive chemiluminescence flow-injection analysis sensor for phosphate-ion detection using maltose phosphorylase , 1999 .

[89]  D. Sivyer,et al.  Spatial and temporal distribution of chromophoric dissolved organic matter (CDOM) fluorescence and its contribution to light attenuation in UK waterbodies , 2008 .

[90]  M. A. Fedak,et al.  Southern Ocean frontal structure and sea-ice formation rates revealed by elephant seals , 2008, Proceedings of the National Academy of Sciences.

[91]  Jean-Louis Marty,et al.  Enzymatic recycling-based amperometric immunosensor for the ultrasensitive detection of okadaic acid in shellfish. , 2008, Biosensors & bioelectronics.

[92]  S I Rogers,et al.  A UK perspective on the development of marine ecosystem indicators. , 2005, Marine pollution bulletin.

[93]  N. Revsbech,et al.  Analysis of microbial communities with electrochemical microsensors and microscale biosensors. , 2005, Methods in enzymology.

[94]  U. Schuster,et al.  Sensors and instruments for oceanic dissolved carbon measurements , 2009 .

[95]  G. Arnold,et al.  Electronic Tags in Marine Fisheries Research: A 30-Year Perspective , 2001 .

[96]  Pascal Picart,et al.  Technological conception of an optical biosensor with a disposable card for use with bioluminescent bacteria , 2007 .

[97]  A. Turner,et al.  Immunosensor for okadaic acid using quartz crystal microbalance , 2002 .

[98]  I. Willner,et al.  A Crosslinked Microperoxidase‐11 and Nitrate Reductase Monolayer on a Gold Electrode: An Integrated Electrically Contacted Electrode for the Bioelectrocatalyzed Reduction of NO3− , 1998 .

[99]  C. Brown,et al.  Mapping seabed assemblages using comparative top-down and bottom-up classification approaches , 2006 .

[100]  Y. Ropert‐Coudert,et al.  Lip-reading in remote subjects: an attempt to quantify and separate ingestion, breathing and vocalisation in free-living animals using penguins as a model , 2002 .

[101]  N. Jaffrezic‐Renault,et al.  A new HRP/catalase biosensor based on microconductometric transduction for nitrite determination , 2009 .