A 3-D Active Contour Method for Automated Segmentation of the Left Ventricle From Magnetic Resonance Images

Objective: This study's objective is to develop and validate a fast automated 3-D segmentation method for cardiac magnetic resonance imaging (MRI). The segmentation algorithm automatically reconstructs cardiac MRI DICOM data into a 3-D model (i.e., direct volumetric segmentation), without relying on prior statistical knowledge. Methods: A novel 3-D active contour method was employed to detect the left ventricular cavity in 33 subjects with heterogeneous heart diseases from the York University database. Papillary muscles were identified and added to the chamber using a convex hull of the left ventricle and interpolation. The myocardium was then segmented using a similar 3-D segmentation method according to anatomic information. A multistage approach was taken to determine the method's efficacy. Results: Our method demonstrated a significant improvement in segmentation performance when compared to manual segmentation and other automated methods. Conclusion and Significance: A true 3-D reconstruction technique without the need for training datasets or any user-driven segmentation has been developed. In this method, a novel combination of internal and external energy terms for active contour was utilized that exploits histogram matching for improving the segmentation performance. This method takes advantage of full volumetric imaging, does not rely on prior statistical knowledge, and employs a convex-hull interpolation to include the papillary muscles.

[1]  Baba C. Vemuri,et al.  Shape Modeling with Front Propagation: A Level Set Approach , 1995, IEEE Trans. Pattern Anal. Mach. Intell..

[2]  Marie-Pierre Jolly,et al.  Automatic Segmentation of the Left Ventricle in Cardiac MR and CT Images , 2006, International Journal of Computer Vision.

[3]  Xavier Bresson,et al.  A Variational Model for Object Segmentation Using Boundary Information and Shape Prior Driven by the Mumford-Shah Functional , 2006, International Journal of Computer Vision.

[4]  Amir A. Amini,et al.  A survey of shaped-based registration and segmentation techniques for cardiac images , 2013, Comput. Vis. Image Underst..

[5]  Ross T. Whitaker,et al.  A Streaming Narrow-Band Algorithm: Interactive Computation and Visualization of Level Sets , 2004, IEEE Trans. Vis. Comput. Graph..

[6]  Arash Kheradvar,et al.  High-speed particle image velocimetry to assess cardiac fluid dynamics in vitro: From performance to validation , 2012 .

[7]  Demetri Terzopoulos,et al.  Snakes: Active contour models , 2004, International Journal of Computer Vision.

[8]  Bo Han,et al.  TouchCut: Fast image and video segmentation using single-touch interaction , 2014, Comput. Vis. Image Underst..

[9]  Michael Ian Shamos,et al.  Convex Hulls: Basic Algorithms , 1985 .

[10]  N. Codella,et al.  Effects of papillary muscles and trabeculae on left ventricular quantification: increased impact of methodological variability in patients with left ventricular hypertrophy , 2008, Journal of hypertension.

[11]  Tony F. Chan,et al.  Active contours without edges , 2001, IEEE Trans. Image Process..

[12]  Chao Li,et al.  Improved semi-automated segmentation of cardiac CT and MR images , 2009, 2009 IEEE International Symposium on Biomedical Imaging: From Nano to Macro.

[13]  A. Ardeshir Goshtasby,et al.  Segmentation of cardiac cine MR images for extraction of right and left ventricular chambers , 1995, IEEE Trans. Medical Imaging.

[14]  Jerry L Prince,et al.  Image Segmentation Using Deformable Models , 2000 .

[15]  S. Osher,et al.  A level set approach for computing solutions to incompressible two-phase flow , 1994 .

[16]  Colin Berry,et al.  Automatic Left Ventricle Segmentation in T2 Weighted CMR Images , 2010, IP&C.

[17]  Tony F. Chan,et al.  A Multiphase Level Set Framework for Image Segmentation Using the Mumford and Shah Model , 2002, International Journal of Computer Vision.

[18]  Shuo Li,et al.  Left Ventricle Segmentation via Graph Cut Distribution Matching , 2009, MICCAI.

[19]  Hubert Cardot,et al.  Segmentation and Tracking of the Left Ventricle in 3D MRI Sequences Using an Active Surface Model , 2007, Twentieth IEEE International Symposium on Computer-Based Medical Systems (CBMS'07).

[20]  Wing Hang Luk,et al.  Comparing left ventricular ejection fraction measurement using cardiovascular magnetic resonance imaging. , 2014, Radiologic technology.

[21]  John K. Tsotsos,et al.  Efficient and generalizable statistical models of shape and appearance for analysis of cardiac MRI , 2008, Medical Image Anal..

[22]  Ioannis A. Kakadiaris,et al.  Automated left ventricular segmentation in cardiac MRI , 2006, IEEE Transactions on Biomedical Engineering.

[23]  D. Rubin,et al.  Maximum likelihood from incomplete data via the EM - algorithm plus discussions on the paper , 1977 .

[24]  Hans-Peter Meinzer,et al.  Statistical shape models for 3D medical image segmentation: A review , 2009, Medical Image Anal..

[25]  Hamid Jafarkhani,et al.  A combined deep-learning and deformable-model approach to fully automatic segmentation of the left ventricle in cardiac MRI , 2015, Medical Image Anal..

[26]  Alexander Dick,et al.  Segmentation of Left Ventricle in Cardiac Cine MRI: An Automatic Image-Driven Method , 2009, FIMH.

[27]  Caroline Petitjean,et al.  Automatic cardiac ventricle segmentation in MR images: a validation study , 2011, International Journal of Computer Assisted Radiology and Surgery.

[28]  Dorin Comaniciu,et al.  Four-Chamber Heart Modeling and Automatic Segmentation for 3-D Cardiac CT Volumes Using Marginal Space Learning and Steerable Features , 2008, IEEE Transactions on Medical Imaging.

[29]  Paul F. Whelan,et al.  Automatic segmentation of the left ventricle cavity and myocardium in MRI data , 2006, Comput. Biol. Medicine.

[30]  Caroline Petitjean,et al.  A review of segmentation methods in short axis cardiac MR images , 2011, Medical Image Anal..

[31]  José M. F. Moura,et al.  STACS: new active contour scheme for cardiac MR image segmentation , 2005, IEEE Transactions on Medical Imaging.

[32]  Francesco Sardanelli,et al.  Segmentation of cardiac cine MR images of left and right ventricles: Interactive semiautomated methods and manual contouring by two readers with different education and experience , 2008, Journal of magnetic resonance imaging : JMRI.

[33]  Jens von Berg,et al.  Automated Segmentation of the Left Ventricle in Cardiac MRI , 2003, MICCAI.

[34]  Milan Sonka,et al.  3-D active appearance models: segmentation of cardiac MR and ultrasound images , 2002, IEEE Transactions on Medical Imaging.