A computational framework for integrative analysis of large microbial genomics data
暂无分享,去创建一个
Wei Zhang | Dan Liu | Erliang Zeng | Scott J. Emrich | Stuart E. Jones | Joshua Livermore | Wei Zhang | Dan Liu | Erliang Zeng | S. Emrich | Joshua Livermore | Stuart E. Jones
[1] R. Knight,et al. Advancing analytical algorithms and pipelines for billions of microbial sequences. , 2012, Current opinion in biotechnology.
[2] Shibu Yooseph,et al. Genomic and functional adaptation in surface ocean planktonic prokaryotes , 2010, Nature.
[3] C. Stoeckert,et al. OrthoMCL: identification of ortholog groups for eukaryotic genomes. , 2003, Genome research.
[4] Wei Zhang,et al. Mapping genomic features to functional traits through microbial whole genome sequences , 2014, Int. J. Bioinform. Res. Appl..
[5] P. Bork,et al. Toward molecular trait-based ecology through integration of biogeochemical, geographical and metagenomic data , 2011, Molecular systems biology.
[6] Albert J. Vilella,et al. Joining forces in the quest for orthologs , 2009, Genome Biology.
[7] P. Shannon,et al. Cytoscape: a software environment for integrated models of biomolecular interaction networks. , 2003, Genome research.
[8] R. Knight,et al. Bacterial Community Variation in Human Body Habitats Across Space and Time , 2009, Science.
[9] Chris H. Q. Ding,et al. Minimum redundancy feature selection from microarray gene expression data , 2003, Computational Systems Bioinformatics. CSB2003. Proceedings of the 2003 IEEE Bioinformatics Conference. CSB2003.
[10] Roded Sharan,et al. The large-scale organization of the bacterial network of ecological co-occurrence interactions , 2010, Nucleic acids research.
[11] W. Whitman,et al. Prokaryotes: the unseen majority. , 1998, Proceedings of the National Academy of Sciences of the United States of America.
[12] Rick L. Stevens,et al. Functional metagenomic profiling of nine biomes , 2008, Nature.
[13] C. Landry,et al. Ecological annotation of genes and genomes through ecological genomics , 2007, Molecular ecology.
[14] R. Knight,et al. Supervised classification of human microbiota. , 2011, FEMS microbiology reviews.
[15] Noah Fierer,et al. Using network analysis to explore co-occurrence patterns in soil microbial communities , 2011, The ISME Journal.
[16] R. Knight,et al. Microbial community resemblance methods differ in their ability to detect biologically relevant patterns , 2010, Nature Methods.
[17] Wei Zhang,et al. A machine learning framework for trait based genomics , 2012, 2012 IEEE 2nd International Conference on Computational Advances in Bio and medical Sciences (ICCABS).
[18] Steven Salzberg,et al. Identifying bacterial genes and endosymbiont DNA with Glimmer , 2007, Bioinform..
[19] Jan O. Korbel,et al. Quantifying environmental adaptation of metabolic pathways in metagenomics , 2009, Proceedings of the National Academy of Sciences.
[20] Hubert Rehrauer,et al. A global network of coexisting microbes from environmental and whole-genome sequence data. , 2010, Genome research.
[21] W. Sloan,et al. What is the extent of prokaryotic diversity? , 2006, Philosophical Transactions of the Royal Society B: Biological Sciences.
[22] Peer Bork,et al. iPath2.0: interactive pathway explorer , 2011, Nucleic Acids Res..
[23] Steve Horvath,et al. WGCNA: an R package for weighted correlation network analysis , 2008, BMC Bioinformatics.
[24] A. Barabasi,et al. Hierarchical Organization of Modularity in Metabolic Networks , 2002, Science.
[25] B. Roe,et al. A core gut microbiome in obese and lean twins , 2008, Nature.
[26] Mark L. Blaxter,et al. annot8r: GO, EC and KEGG annotation of EST datasets , 2008, BMC Bioinformatics.
[27] Sallie W. Chisholm,et al. Emergent Biogeography of Microbial Communities in a Model Ocean , 2007, Science.
[28] Christian R Landry,et al. What is needed for next-generation ecological and evolutionary genomics? , 2012, Trends in ecology & evolution.
[29] Curtis Huttenhower,et al. Microbial Co-occurrence Relationships in the Human Microbiome , 2012, PLoS Comput. Biol..