A Human Protein-Protein Interaction Network: A Resource for Annotating the Proteome

[1]  M. Vidal,et al.  Effect of sampling on topology predictions of protein-protein interaction networks , 2005, Nature Biotechnology.

[2]  Carsten Wiuf,et al.  Subnets of scale-free networks are not scale-free: sampling properties of networks. , 2005, Proceedings of the National Academy of Sciences of the United States of America.

[3]  R. Chanet,et al.  Protein interaction mapping: a Drosophila case study. , 2005, Genome research.

[4]  Dmitrij Frishman,et al.  MIPS: analysis and annotation of proteins from whole genomes in 2005 , 2005, Nucleic Acids Res..

[5]  Razvan C. Bunescu,et al.  Consolidating the set of known human protein-protein interactions in preparation for large-scale mapping of the human interactome , 2005, Genome Biology.

[6]  R. Nusse,et al.  The Wnt signaling pathway in development and disease. , 2004, Annual review of cell and developmental biology.

[7]  H. Lehrach,et al.  A protein interaction network links GIT1, an enhancer of huntingtin aggregation, to Huntington's disease. , 2004, Molecular cell.

[8]  F. Brembeck,et al.  Essential role of BCL9-2 in the switch between beta-catenin's adhesive and transcriptional functions. , 2004, Genes & development.

[9]  A. Fraser,et al.  A first-draft human protein-interaction map , 2004, Genome Biology.

[10]  J. Wojcik,et al.  Functional proteomics mapping of a human signaling pathway. , 2004, Genome research.

[11]  Lan V. Zhang,et al.  Evidence for dynamically organized modularity in the yeast protein–protein interaction network , 2004, Nature.

[12]  Arun K. Ramani,et al.  Protein interaction networks from yeast to human. , 2004, Current opinion in structural biology.

[13]  M. Gerstein,et al.  Annotation transfer between genomes: protein-protein interologs and protein-DNA regulogs. , 2004, Genome research.

[14]  Sheng-Cai Lin,et al.  Axin: A Master Scaffold for Multiple Signaling Pathways , 2004, Neurosignals.

[15]  R. Milo,et al.  Network motifs in integrated cellular networks of transcription-regulation and protein-protein interaction. , 2004, Proceedings of the National Academy of Sciences of the United States of America.

[16]  Igor Jurisica,et al.  Modeling interactome: scale-free or geometric? , 2004, Bioinform..

[17]  Marc Vidal,et al.  Increasing specificity in high-throughput yeast two-hybrid experiments. , 2004, Methods.

[18]  A. Barabasi,et al.  Functional and topological characterization of protein interaction networks , 2004, Proteomics.

[19]  A. Barabasi,et al.  Network biology: understanding the cell's functional organization , 2004, Nature Reviews Genetics.

[20]  S. L. Wong,et al.  A Map of the Interactome Network of the Metazoan C. elegans , 2004, Science.

[21]  M. Gerstein,et al.  TopNet: a tool for comparing biological sub-networks, correlating protein properties with topological statistics. , 2004, Nucleic acids research.

[22]  Chi-Ying F. Huang,et al.  Collapsin response mediator protein-1: A novel invasion-suppressor gene , 2003, Clinical & Experimental Metastasis.

[23]  Mark Gerstein,et al.  Analyzing cellular biochemistry in terms of molecular networks. , 2003, Annual review of biochemistry.

[24]  K. Kaibuchi,et al.  Role of CRMP-2 in neuronal polarity. , 2004, Journal of neurobiology.

[25]  Susumu Goto,et al.  The KEGG resource for deciphering the genome , 2004, Nucleic Acids Res..

[26]  James R. Knight,et al.  A Protein Interaction Map of Drosophila melanogaster , 2003, Science.

[27]  Joshua M. Stuart,et al.  A Gene-Coexpression Network for Global Discovery of Conserved Genetic Modules , 2003, Science.

[28]  Hanno Steen,et al.  Development of human protein reference database as an initial platform for approaching systems biology in humans. , 2003, Genome research.

[29]  M. Vidal,et al.  Integrating 'omic' information: a bridge between genomics and systems biology. , 2003, Trends in genetics : TIG.

[30]  Z N Oltvai,et al.  Evolutionary conservation of motif constituents in the yeast protein interaction network , 2003, Nature Genetics.

[31]  D. Goldberg,et al.  Assessing experimentally derived interactions in a small world , 2003, Proceedings of the National Academy of Sciences of the United States of America.

[32]  S. Shen-Orr,et al.  Network motifs: simple building blocks of complex networks. , 2002, Science.

[33]  A. Barabasi,et al.  Hierarchical Organization of Modularity in Metabolic Networks , 2002, Science.

[34]  B. Snel,et al.  Comparative assessment of large-scale data sets of protein–protein interactions , 2002, Nature.

[35]  P. McNamara,et al.  Regulation of Histone Acetylation and Transcription by Nuclear Protein pp32, a Subunit of the INHAT Complex* , 2002, The Journal of Biological Chemistry.

[36]  S. Shen-Orr,et al.  Networks Network Motifs : Simple Building Blocks of Complex , 2002 .

[37]  Hierarchical Organization of Modularity in Metabolic Networks Supporting Online Material , 2002 .

[38]  Christian E. V. Storm,et al.  Automatic clustering of orthologs and in-paralogs from pairwise species comparisons. , 2001, Journal of molecular biology.

[39]  M. Vidal,et al.  Identification of potential interaction networks using sequence-based searches for conserved protein-protein interactions or "interologs". , 2001, Genome research.

[40]  W. Birchmeier,et al.  New aspects of Wnt signaling pathways in higher vertebrates. , 2001, Current opinion in genetics & development.

[41]  A. Barabasi,et al.  Lethality and centrality in protein networks , 2001, Nature.

[42]  Gary R Pasternack,et al.  Tumor suppression and potentiation by manipulation of pp32 expression , 2001, Oncogene.

[43]  R. Ozawa,et al.  A comprehensive two-hybrid analysis to explore the yeast protein interactome , 2001, Proceedings of the National Academy of Sciences of the United States of America.

[44]  S. Strogatz Exploring complex networks , 2001, Nature.

[45]  J. Wojcik,et al.  The protein–protein interaction map of Helicobacter pylori , 2001, Nature.

[46]  A. Levine,et al.  Surfing the p53 network , 2000, Nature.

[47]  A. Bauer,et al.  Pontin52 and Reptin52 function as antagonistic regulators of β‐catenin signalling activity , 2000, The EMBO journal.

[48]  R. Albert,et al.  The large-scale organization of metabolic networks , 2000, Nature.

[49]  A. Barabasi,et al.  Error and attack tolerance of complex networks , 2000, Nature.

[50]  M. Ashburner,et al.  Gene Ontology: tool for the unification of biology , 2000, Nature Genetics.

[51]  James R. Knight,et al.  A comprehensive analysis of protein–protein interactions in Saccharomyces cerevisiae , 2000, Nature.

[52]  M. Vidal,et al.  Protein interaction mapping in C. elegans using proteins involved in vulval development. , 2000, Science.

[53]  B. Séraphin,et al.  A generic protein purification method for protein complex characterization and proteome exploration , 1999, Nature Biotechnology.

[54]  H. Lehrach,et al.  A method for global protein expression and antibody screening on high-density filters of an arrayed cDNA library. , 1998, Nucleic acids research.

[55]  S R Pfeffer,et al.  Biochemical Characterization Of Mapmodulin, a Protein That Binds Microtubule-associated Proteins* , 1997, The Journal of Biological Chemistry.

[56]  Michael Kühl,et al.  Functional interaction of β-catenin with the transcription factor LEF-1 , 1996, Nature.

[57]  R Grosschedl,et al.  Functional interaction of beta-catenin with the transcription factor LEF-1. , 1996, Nature.

[58]  R. Tsien,et al.  Specificity and Stability in Topology of Protein Networks , 2022 .