Characterization of CA-MRSA TCH1516 exposed to nafcillin in bacteriological and physiological media

[1]  Jeffrey W. Smith,et al.  Correcting a Fundamental Flaw in the Paradigm for Antimicrobial Susceptibility Testing , 2017, EBioMedicine.

[2]  Christopher. Simons,et al.  Machine learning with Python , 2017 .

[3]  J. O'Neill,et al.  Tackling drug-resistant infections globally: final report and recommendations , 2016 .

[4]  V. Nizet,et al.  Bacterial Cytological Profiling (BCP) as a Rapid and Accurate Antimicrobial Susceptibility Testing Method for Staphylococcus aureus , 2016, EBioMedicine.

[5]  K. Poole.  Bacterial stress responses as determinants of antimicrobial resistance. , 2012, The Journal of antimicrobial chemotherapy.

[6]  Steven L Salzberg,et al.  Fast gapped-read alignment with Bowtie 2 , 2012, Nature Methods.

[7]  Andrew E. Jaffe,et al.  Bioinformatics Applications Note Gene Expression the Sva Package for Removing Batch Effects and Other Unwanted Variation in High-throughput Experiments , 2022 .

[8]  J. Martínez,et al.  Metabolic regulation of antibiotic resistance. , 2011, FEMS microbiology reviews.

[9]  Gaël Varoquaux,et al.  Scikit-learn: Machine Learning in Python , 2011, J. Mach. Learn. Res..

[10]  R. Daum,et al.  Community-Associated Methicillin-Resistant Staphylococcus aureus: Epidemiology and Clinical Consequences of an Emerging Epidemic , 2010, Clinical Microbiology Reviews.

[11]  G. Weinstock,et al.  Subtle genetic changes enhance virulence of methicillin resistant and sensitive Staphylococcus aureus , 2007, BMC Microbiology.

[12]  A. Barry.  An Overview of the Clinical and Laboratory Standards Institute (CLSI) and Its Impact on Antimicrobial Susceptibility Tests , 2007 .

[13]  Anne E Carpenter,et al.  CellProfiler: image analysis software for identifying and quantifying cell phenotypes , 2006, Genome Biology.

[14]  V. Nizet,et al.  The mammalian ionic environment dictates microbial susceptibility to antimicrobial defense peptides , 2006, FASEB journal : official publication of the Federation of American Societies for Experimental Biology.

[15]  Ewert Bengtsson,et al.  A Feature Set for Cytometry on Digitized Microscopic Images , 2003, Analytical cellular pathology : the journal of the European Society for Analytical Cellular Pathology.

[16]  J. Turnidge.  The Pharmacodynamics of β-Lactams , 1998 .

[17]  D. Gage,et al.  Effect of exogenous glycine on peptidoglycan composition and resistance in a methicillin-resistant Staphylococcus aureus strain , 1996, Antimicrobial agents and chemotherapy.

[18]  Cheng Li,et al.  Adjusting batch effects in microarray expression data using empirical Bayes methods. , 2007, Biostatistics.

[19]  M. Ferraro.  Performance standards for antimicrobial susceptibility testing , 2001 .