Transcriptome analysis of a rice cultivar reveals the differentially expressed genes in response to wild and mutant strains of Xanthomonas oryzae pv. oryzae
暂无分享,去创建一个
[1] Tengfei Qin,et al. Comparative Transcriptome Profiling of Rice Near-Isogenic Line Carrying Xa23 under Infection of Xanthomonas oryzae pv. oryzae , 2018, International journal of molecular sciences.
[2] A. Molina,et al. Plant cell wall-mediated immunity: cell wall changes trigger disease resistance responses. , 2018, The Plant journal : for cell and molecular biology.
[3] Stephen P. Cohen,et al. RNA-Seq analysis reveals insight into enhanced rice Xa7-mediated bacterial blight resistance at high temperature , 2017, PloS one.
[4] Sonali Roy. Time-Intensive Transcriptomics Reveal Temporal Patterns in the Jasmonic Acid Gene Regulatory Network[OPEN] , 2017, Plant Cell.
[5] Xueyong Li,et al. A Rice PECTATE LYASE-LIKE Gene Is Required for Plant Growth and Leaf Senescence1[OPEN] , 2017, Plant Physiology.
[6] Y. Vikal,et al. Genetics and Genomics of Bacterial Blight Resistance in Rice , 2017 .
[7] Xianghua Li,et al. Improvement of multiple agronomic traits by a disease resistance gene via cell wall reinforcement , 2017, Nature Plants.
[8] Erin L. Doyle,et al. TAL Effectors Drive Transcription Bidirectionally in Plants. , 2017, Molecular plant.
[9] Xuewei Chen,et al. Activation of ethylene signaling pathways enhances disease resistance by regulating ROS and phytoalexin production in rice , 2017, The Plant journal : for cell and molecular biology.
[10] H. Qu,et al. Transcriptome Analysis Highlights Defense and Signaling Pathways Mediated by Rice pi21 Gene with Partial Resistance to Magnaporthe oryzae , 2016, Frontiers in plant science.
[11] J. Sakagami,et al. Identification and linkage analysis of a new rice bacterial blight resistance gene from XM14, a mutant line from IR24 , 2016, Breeding science.
[12] W. Zhai,et al. The rice thylakoid membrane-bound ascorbate peroxidase OsAPX8 functions in tolerance to bacterial blight , 2016, Scientific Reports.
[13] Hongsheng Zhang,et al. OsJAMyb, a R2R3-type MYB transcription factor, enhanced blast resistance in transgenic rice , 2015 .
[14] C. Sudandiradoss,et al. Homotypic clustering of OsMYB4 binding site motifs in promoters of the rice genome and cellular-level implications on sheath blight disease resistance. , 2015, Gene.
[15] Xianghua Li,et al. The WRKY45-2 WRKY13 WRKY42 Transcriptional Regulatory Cascade Is Required for Rice Resistance to Fungal Pathogen1[OPEN] , 2015, Plant Physiology.
[16] Yixing Han,et al. Advanced Applications of RNA Sequencing and Challenges , 2015, Bioinformatics and biology insights.
[17] Qinlong Zhu,et al. XA23 is an executor R protein and confers broad-spectrum disease resistance in rice. , 2014, Molecular plant.
[18] Kazunori Okada,et al. WRKY76 is a rice transcriptional repressor playing opposite roles in blast disease resistance and cold stress tolerance , 2013, Journal of experimental botany.
[19] M. Ohme-Takagi,et al. APETALA2/Ethylene Responsive Factor (AP2/ERF) transcription factors: mediators of stress responses and developmental programs. , 2013, The New phytologist.
[20] Hongya Gu,et al. Transcriptional Profiling of Rice Early Response to Magnaporthe oryzae Identified OsWRKYs as Important Regulators in Rice Blast Resistance , 2013, PloS one.
[21] Jun-ichi Itoh,et al. RiceFREND: a platform for retrieving coexpressed gene networks in rice , 2012, Nucleic Acids Res..
[22] N. Hayashi,et al. Nuclear ubiquitin proteasome degradation affects WRKY45 function in the rice defense program , 2012, The Plant journal : for cell and molecular biology.
[23] Emily E Helliwell,et al. Transgenic rice with inducible ethylene production exhibits broad-spectrum disease resistance to the fungal pathogens Magnaporthe oryzae and Rhizoctonia solani. , 2013, Plant biotechnology journal.
[24] Cole Trapnell,et al. TopHat2: accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions , 2013, Genome Biology.
[25] D. Choi,et al. RNA-seq pinpoints a Xanthomonas TAL-effector activated resistance gene in a large-crop genome , 2012, Proceedings of the National Academy of Sciences.
[26] Jukon Kim,et al. The overexpression of OsNAC9 alters the root architecture of rice plants enhancing drought resistance and grain yield under field conditions. , 2012, Plant biotechnology journal.
[27] C. Zuo,et al. Transcriptome profiling of resistant and susceptible Cavendish banana roots following inoculation with Fusarium oxysporum f. sp. cubense tropical race 4 , 2012, BMC Genomics.
[28] Zhang-liang Chen,et al. Arabidopsis RAP2.2 plays an important role in plant resistance to Botrytis cinerea and ethylene responses. , 2012, The New phytologist.
[29] Zejian Guo,et al. The rice ERF transcription factor OsERF922 negatively regulates resistance to Magnaporthe oryzae and salt tolerance , 2012, Journal of experimental botany.
[30] Steven L Salzberg,et al. Fast gapped-read alignment with Bowtie 2 , 2012, Nature Methods.
[31] David M. Goodstein,et al. Phytozome: a comparative platform for green plant genomics , 2011, Nucleic Acids Res..
[32] J. Estevez,et al. Arabidopsis heterotrimeric G-protein regulates cell wall defense and resistance to necrotrophic fungi. , 2012, Molecular plant.
[33] Dayong Li,et al. Functions of rice NAC transcriptional factors, ONAC122 and ONAC131, in defense responses against Magnaporthe grisea , 2012, Plant Molecular Biology.
[34] Marcel Martin. Cutadapt removes adapter sequences from high-throughput sequencing reads , 2011 .
[35] C. Dunand,et al. Transcriptome analysis of various flower and silique development stages indicates a set of class III peroxidase genes potentially involved in pod shattering in Arabidopsis thaliana , 2010, BMC Genomics.
[36] Z. Punja,et al. Enhanced disease resistance in transgenic carrot (Daucus carota L.) plants over-expressing a rice cationic peroxidase , 2010, Planta.
[37] U. Bonas,et al. Xanthomonas AvrBs3 family-type III effectors: discovery and function. , 2010, Annual review of phytopathology.
[38] Karam B. Singh,et al. Plants versus pathogens: an evolutionary arms race. , 2010, Functional plant biology : FPB.
[39] Cole Trapnell,et al. Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation. , 2010, Nature biotechnology.
[40] Zhou Du,et al. agriGO: a GO analysis toolkit for the agricultural community , 2010, Nucleic Acids Res..
[41] W. Huber,et al. which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. MAnorm: a robust model for quantitative comparison of ChIP-Seq data sets , 2011 .
[42] P. Ronald,et al. OsWRKY IIa Transcription Factors Modulate Rice Innate Immunity , 2010, Rice.
[43] T. Vogt. Phenylpropanoid biosynthesis. , 2010, Molecular plant.
[44] Jens Boch,et al. Breaking the Code of DNA Binding Specificity of TAL-Type III Effectors , 2009, Science.
[45] Matthew J. Moscou,et al. A Simple Cipher Governs DNA Recognition by TAL Effectors , 2009, Science.
[46] Cai-guo Xu,et al. A Pair of Allelic WRKY Genes Play Opposite Roles in Rice-Bacteria Interactions1[C][W][OA] , 2009, Plant Physiology.
[47] L. Almagro,et al. Class III peroxidases in plant defence reactions. , 2009, Journal of experimental botany.
[48] T. Kaneda,et al. Role of OsHSP90 and IREN, Ca2+ dependent nuclease, in plant hypersensitive cell death induced by transcription factor OsNAC4. , 2009, Plant signaling & behavior.
[49] Shoshi Kikuchi,et al. Characterization of WRKY co-regulatory networks in rice and Arabidopsis , 2009, BMC Plant Biology.
[50] Wen-quan Wang,et al. Generation and characterisation of Tn5-tagged Xanthomonas oryzae pv. oryzae mutants that overcome Xa23-mediated resistance to bacterial blight of rice , 2009, European Journal of Plant Pathology.
[51] Zejian Guo,et al. Tobacco OPBP1 Enhances Salt Tolerance and Disease Resistance of Transgenic Rice , 2008, International journal of molecular sciences.
[52] Xuewei Chen,et al. OsWRKY62 is a negative regulator of basal and Xa21-mediated defense against Xanthomonas oryzae pv. oryzae in rice. , 2008, Molecular plant.
[53] J. Hofer,et al. Legume Transcription Factors: Global Regulators of Plant Development and Response to the Environment1[W] , 2007, Plant Physiology.
[54] L. Qu,et al. Transcription factor families in Arabidopsis: major progress and outstanding issues for future research. , 2006, Current opinion in plant biology.
[55] C. Mei,et al. Inducible overexpression of a rice allene oxide synthase gene increases the endogenous jasmonic acid level, PR gene expression, and host resistance to fungal infection. , 2006, Molecular plant-microbe interactions : MPMI.
[56] K. Nishitani,et al. Digital Object Identifier (DOI) 10.1007/s10265-006-0261-7 JPR SYMPOSIUM , 2022 .
[57] Fan Yang,et al. R gene expression induced by a type-III effector triggers disease resistance in rice , 2005, Nature.
[58] S. Allison,et al. Differential Activity of Peroxidase Isozymes in Response to Wounding, Gypsy Moth, and Plant Hormones in Northern Red Oak (Quercus rubra L.) , 2004, Journal of Chemical Ecology.
[59] S. Rhee,et al. MAPMAN: a user-driven tool to display genomics data sets onto diagrams of metabolic pathways and other biological processes. , 2004, The Plant journal : for cell and molecular biology.
[60] M. Bernards,et al. Oxidases, peroxidases and hydrogen peroxide: The suberin connection , 2004, Phytochemistry Reviews.
[61] Hans Steinhart,et al. Peroxidase-dependent cross-linking reactions of p-hydroxycinnamates in plant cell walls , 2004, Phytochemistry Reviews.
[62] R. Solano,et al. ETHYLENE RESPONSE FACTOR1 Integrates Signals from Ethylene and Jasmonate Pathways in Plant Defense Online version contains Web-only data. Article, publication date, and citation information can be found at www.plantcell.org/cgi/doi/10.1105/tpc.007468. , 2003, The Plant Cell Online.
[63] J. Leach,et al. Vascular defense responses in rice: peroxidase accumulation in xylem parenchyma cells and xylem wall thickening. , 2001, Molecular plant-microbe interactions : MPMI.
[64] Thomas D. Schmittgen,et al. Analysis of relative gene expression data using real-time quantitative PCR and the 2(-Delta Delta C(T)) Method. , 2001, Methods.
[65] G. Agrawal,et al. A novel rice (Oryza sativa L.) acidic PR1 gene highly responsive to cut, phytohormones, and protein phosphatase inhibitors. , 2000, Biochemical and biophysical research communications.
[66] Susumu Goto,et al. KEGG: Kyoto Encyclopedia of Genes and Genomes , 2000, Nucleic Acids Res..
[67] V. Valpuesta,et al. Biochemical and phenotypical characterization of transgenic tomato plants overexpressing a basic peroxidase , 1999 .
[68] H. Kaku,et al. Growth of Xanthomonas oryzae pv. oryzae in planta and in guttation fluid of rice , 1999 .
[69] I. Mitsuhara,et al. Antagonistic Effect of Salicylic Acid and Jasmonic Acid on the Expression of Pathogenesis-Related (PR) Protein Genes in Wounded Mature Tobacco Leaves , 1998 .
[70] Thomas D. Schmittgen,et al. Analysis of Relative Gene Expression Data Using Real-Time Quantitative PCR and the 2 2 DD C T Method , 2022 .