Human interactome resource and gene set linkage analysis for the functional interpretation of biologically meaningful gene sets
暂无分享,去创建一个
Xin Chen | Xi Zhou | Qiang Wei | Pengcheng Chen | Xueling Shen | Xiaoping Zhou | Pengcheng Chen | Xin Chen | Xueling Shen | Qiang Wei
[1] Ruth Nussinov,et al. Structure and dynamics of molecular networks: A novel paradigm of drug discovery. A comprehensive review , 2012, Pharmacology & therapeutics.
[2] G. Cagney,et al. Methylation of Histone H3 by Set2 in Saccharomyces cerevisiae Is Linked to Transcriptional Elongation by RNA Polymerase II , 2003, Molecular and Cellular Biology.
[3] Ferenc Jordán,et al. A quantitative approach to study indirect effects among disease proteins in the human protein interaction network , 2010, BMC Systems Biology.
[4] Ferenc Jordán,et al. Inferring pleiotropy by network analysis: linked diseases in the human PPI network , 2011, BMC Systems Biology.
[5] Pablo Tamayo,et al. Gene set enrichment analysis: A knowledge-based approach for interpreting genome-wide expression profiles , 2005, Proceedings of the National Academy of Sciences of the United States of America.
[6] Mark Gerstein,et al. The Importance of Bottlenecks in Protein Networks: Correlation with Gene Essentiality and Expression Dynamics , 2007, PLoS Comput. Biol..
[7] A. Barabasi,et al. High-Quality Binary Protein Interaction Map of the Yeast Interactome Network , 2008, Science.
[8] M. Ashburner,et al. Gene Ontology: tool for the unification of biology , 2000, Nature Genetics.
[9] David J. Anderson,et al. A Diverse Family of GPCRs Expressed in Specific Subsets of Nociceptive Sensory Neurons , 2001, Cell.
[10] Andrey Alexeyenko,et al. Network enrichment analysis: extension of gene-set enrichment analysis to gene networks , 2012, BMC Bioinformatics.
[11] Brad T. Sherman,et al. Bioinformatics enrichment tools: paths toward the comprehensive functional analysis of large gene lists , 2008, Nucleic acids research.
[12] A. Ullrich,et al. Critical Role of Calcium- dependent Epidermal Growth Factor Receptor Transactivation in PC12 Cell Membrane Depolarization and Bradykinin Signaling* , 1997, The Journal of Biological Chemistry.
[13] D. Bu,et al. Topological structure analysis of the protein-protein interaction network in budding yeast. , 2003, Nucleic acids research.
[14] L. Wittgenstein. Tractatus Logico-Philosophicus , 2021, Nordic Wittgenstein Review.
[15] Cory Y. McLean,et al. GREAT improves functional interpretation of cis-regulatory regions , 2010, Nature Biotechnology.
[16] Ker-Chau Li,et al. A system for enhancing genome-wide coexpression dynamics study. , 2004, Proceedings of the National Academy of Sciences of the United States of America.
[17] Antoine M. van Oijen,et al. Real-time single-molecule observation of rolling-circle DNA replication , 2009, Nucleic acids research.
[18] Adam A. Margolin,et al. Reverse engineering of regulatory networks in human B cells , 2005, Nature Genetics.
[19] P. Farnham. Insights from genomic profiling of transcription factors , 2009, Nature Reviews Genetics.
[20] Gary D. Bader,et al. An automated method for finding molecular complexes in large protein interaction networks , 2003, BMC Bioinformatics.
[21] Damian Szklarczyk,et al. STRING v9.1: protein-protein interaction networks, with increased coverage and integration , 2012, Nucleic Acids Res..
[22] En Li,et al. Suv 39 h-Mediated Histone H 3 Lysine 9 Methylation Directs DNA Methylation to Major Satellite Repeats at Pericentric Heterochromatin , 2003 .
[23] James R. Knight,et al. A Protein Interaction Map of Drosophila melanogaster , 2003, Science.
[24] Xiaowen Chen,et al. Topological properties of the drug targets regulated by microRNA in human protein–protein interaction network , 2011, Journal of drug targeting.
[25] Philip S. Yu,et al. A new method to measure the semantic similarity of GO terms , 2007, Bioinform..
[26] David Botstein,et al. GO: : TermFinder--open source software for accessing Gene Ontology information and finding significantly enriched Gene Ontology terms associated with a list of genes , 2004, Bioinform..
[27] Alain Guénoche,et al. Clustering proteins from interaction networks for the prediction of cellular functions , 2004, BMC Bioinformatics.
[28] Kevin Y Yip,et al. Comparing classical pathways and modern networks: towards the development of an edge ontology. , 2007, Trends in biochemical sciences.
[29] Lan V. Zhang,et al. Evidence for dynamically organized modularity in the yeast protein–protein interaction network , 2004, Nature.
[30] W-C Hwang,et al. Identification of Information Flow‐Modulating Drug Targets: A Novel Bridging Paradigm for Drug Discovery , 2008, Clinical pharmacology and therapeutics.
[31] References , 1971 .
[32] E. Marcotte,et al. Prioritizing candidate disease genes by network-based boosting of genome-wide association data. , 2011, Genome research.
[33] Igor Jurisica,et al. Exploiting the mevalonate pathway to distinguish statin-sensitive multiple myeloma. , 2010, Blood.
[34] Srinivasan Parthasarathy,et al. An ensemble framework for clustering protein-protein interaction networks , 2007, ISMB/ECCB.
[35] D. Moazed. Small RNAs in transcriptional gene silencing and genome defence , 2009, Nature.