References and Notes Supporting Online Material Materials and Methods Figures S1 to S5 Table S1 References Solution Structure of the Integral Human Membrane Protein Vdac-1 in Detergent Micelles

The voltage-dependent anion channel (VDAC) mediates trafficking of small molecules and ions across the eukaryotic outer mitochondrial membrane. VDAC also interacts with antiapoptotic proteins from the Bcl-2 family, and this interaction inhibits release of apoptogenic proteins from the mitochondrion. We present the nuclear magnetic resonance (NMR) solution structure of recombinant human VDAC-1 reconstituted in detergent micelles. It forms a 19-stranded β barrel with the first and last strand parallel. The hydrophobic outside perimeter of the barrel is covered by detergent molecules in a beltlike fashion. In the presence of cholesterol, recombinant VDAC-1 can form voltage-gated channels in phospholipid bilayers similar to those of the native protein. NMR measurements revealed the binding sites of VDAC-1 for the Bcl-2 protein Bcl-xL, for reduced β–nicotinamide adenine dinucleotide, and for cholesterol. Bcl-xL interacts with the VDAC barrel laterally at strands 17 and 18.

[1]  Matthew G. Vander Heiden,et al.  Bcl-2 proteins: regulators of apoptosis or of mitochondrial homeostasis? , 1999, Nature Cell Biology.

[2]  H. Guy,et al.  Molecular genetics of the VDAC ion channel: Structural model and sequence analysis , 1987, Journal of bioenergetics and biomembranes.

[3]  S. Korsmeyer,et al.  Review Cell Death: Critical Control Points Another Line of Evidence for the Importance of Caspases in Cell Death Came From , 2022 .

[4]  B. Antonsson,et al.  Bid, but Not Bax, Regulates VDAC Channels* , 2004, Journal of Biological Chemistry.

[5]  P. Hoskisson Streptomyces in Nature and Medicine: the Antibiotic Makers , 2008 .

[6]  C. Mannella Structure of the outer mitochondrial membrane: ordered arrays of porelike subunits in outer-membrane fractions from neurospora crassa mitochondria , 1982, The Journal of cell biology.

[7]  M. Colombini,et al.  The sensor regions of VDAC are translocated from within the membrane to the surface during the gating processes. , 1998, Biophysical journal.

[8]  Masashi Narita,et al.  Bcl-2 family proteins regulate the release of apoptogenic cytochrome c by the mitochondrial channel VDAC , 1999, Nature.

[9]  M. Colombini,et al.  VDAC channels mediate and gate the flow of ATP: implications for the regulation of mitochondrial function. , 1997, Biophysical journal.

[10]  C. Mannella,et al.  Peptide-specific Antibodies as Probes of the Topography of the Voltage-gated Channel in the Mitochondrial Outer Membrane of Neurospora crassa(*) , 1995, The Journal of Biological Chemistry.

[11]  B. Antonsson,et al.  Two pathways for tBID‐induced cytochrome c release from rat brain mitochondria: BAK‐ versus BAX‐dependence , 2002, Journal of neurochemistry.

[12]  Lorenzo Galluzzi,et al.  Mitochondrial membrane permeabilization in cell death. , 2007, Physiological reviews.

[13]  R. Rosenfeld Nature , 2009, Otolaryngology--head and neck surgery : official journal of American Academy of Otolaryngology-Head and Neck Surgery.

[14]  W. Craigen,et al.  The physiological properties of a novel family of VDAC-like proteins from Drosophila melanogaster. , 2004, Biophysical journal.

[15]  C. Mannella,et al.  Bacterial Expression and Characterization of the Mitochondrial Outer Membrane Channel , 1998, The Journal of Biological Chemistry.

[16]  M. Colombini,et al.  NADH regulates the gating of VDAC, the mitochondrial outer membrane channel. , 1994, The Journal of biological chemistry.

[17]  V. De Pinto,et al.  Peptide-specific antibodies and proteases as probes of the transmembrane topology of the bovine heart mitochondrial porin. , 1991, Biochemistry.

[18]  M. Colombini,et al.  Regulation of Metabolite Flux through Voltage-Gating of VDAC Channels , 1997, The Journal of Membrane Biology.

[19]  M. Colombini,et al.  The Topology of VDAC as Probed by Biotin Modification* , 1998, The Journal of Biological Chemistry.

[20]  T Pawson,et al.  Selective methyl group protonation of perdeuterated proteins. , 1996, Journal of molecular biology.

[21]  宁北芳,et al.  疟原虫var基因转换速率变化导致抗原变异[英]/Paul H, Robert P, Christodoulou Z, et al//Proc Natl Acad Sci U S A , 2005 .

[22]  A. Beaudet,et al.  Immotile Sperm and Infertility in Mice Lacking Mitochondrial Voltage-dependent Anion Channel Type 3* , 2001, The Journal of Biological Chemistry.

[23]  C. Mannella,et al.  Molecular design of the voltage-dependent, anion-selective channel in the mitochondrial outer membrane. , 1995, Journal of structural biology.

[24]  E. O'Shaughnessy,et al.  J Antimicrob Chemother 1994; 33: 350–351 , 1994 .

[25]  G. Wagner,et al.  NMR structural investigation of the mitochondrial outer membrane protein VDAC and its interaction with antiapoptotic Bcl-xL. , 2007, Biochemistry.

[26]  M. Colombini,et al.  Mapping of residues forming the voltage sensor of the voltage-dependent anion-selective channel. , 1993, Proceedings of the National Academy of Sciences of the United States of America.

[27]  M. Colombini VDAC: The channel at the interface between mitochondria and the cytosol , 2004, Molecular and Cellular Biochemistry.

[28]  S. Eykyn Microbiology , 1950, The Lancet.

[29]  J. Martinou,et al.  Mitochondria as the central control point of apoptosis. , 2000, Trends in cell biology.

[30]  M. V. Vander Heiden,et al.  Bcl-x l Promotes the Open Configuration of the Voltage-dependent Anion Channel and Metabolite Passage through the Outer Mitochondrial Membrane* , 2001, The Journal of Biological Chemistry.

[31]  K. Wüthrich NMR of proteins and nucleic acids , 1988 .

[32]  R. Benz,et al.  Interaction of non-classical detergents with the mitochondrial porin. A new purification procedure and characterization of the pore-forming unit. , 1989, European journal of biochemistry.

[33]  M. Mann,et al.  Global, In Vivo, and Site-Specific Phosphorylation Dynamics in Signaling Networks , 2006, Cell.

[34]  M. Colombini Voltage gating in the mitochondrial channel, VDAC , 1989, The Journal of Membrane Biology.

[35]  G. Wider,et al.  Membrane Protein–Lipid Interactions in Mixed Micelles Studied by NMR Spectroscopy with the Use of Paramagnetic Reagents , 2004, Chembiochem : a European journal of chemical biology.

[36]  F. Young Biochemistry , 1955, The Indian Medical Gazette.

[37]  R. Benz,et al.  Determination of the Conformation of the Human VDAC1 N‐Terminal Peptide, a Protein Moiety Essential for the Functional Properties of the Pore , 2007, Chembiochem : a European journal of chemical biology.

[38]  M. Colombini A candidate for the permeability pathway of the outer mitochondrial membrane , 1979, Nature.

[39]  A. Messina,et al.  Voltage-dependent Anion-selective Channels VDAC2 and VDAC3 Are Abundant Proteins in Bovine Outer Dense Fibers, a Cytoskeletal Component of the Sperm Flagellum* , 2004, Journal of Biological Chemistry.

[40]  S. Schein,et al.  Reconstitution in planar lipid bilayers of a voltage-dependent anion-selective channel obtained from paramecium mitochondria , 1976, The Journal of Membrane Biology.