Temperature dependence of the transport coefficients of ions from molecular dynamics simulations

Abstract The force fields employed in molecular dynamics (MD) simulations are determined under ambient conditions but not much attention is paid to their domain of applicability. Whether the current MD force fields have predictive power is an important issue that will affect the future developments in the field. Here, we determine the transport coefficients of ions in water from MD simulations at various temperatures and compare them with the available data. The results reveal that the rigid models used in standard MD force fields have difficulties in reproducing the observed temperature variations in conductivity data.

[1]  H. Berendsen,et al.  A consistent empirical potential for water–protein interactions , 1984 .

[2]  Gerhard Hummer,et al.  System-Size Dependence of Diffusion Coefficients and Viscosities from Molecular Dynamics Simulations with Periodic Boundary Conditions , 2004 .

[3]  Berk Hess,et al.  GROMACS 3.0: a package for molecular simulation and trajectory analysis , 2001 .

[4]  R. Mills,et al.  Self-diffusion in normal and heavy water in the range 1-45.deg. , 1973 .

[5]  B. B. Owen,et al.  The Physical Chemistry of Electrolytic Solutions , 1963 .

[6]  S. Chung,et al.  Temperature dependence of conductivity in electrolyte solutions and ionic channels of biological membranes. , 1994, Biophysical chemistry.

[7]  H. Berendsen,et al.  Molecular dynamics with coupling to an external bath , 1984 .

[8]  W. V. van Gunsteren,et al.  Charge-on-spring polarizable water models revisited: from water clusters to liquid water to ice. , 2004, The Journal of chemical physics.

[9]  J. Rasaiah,et al.  Molecular Dynamics Simulation of Ion Mobility. 2. Alkali Metal and Halide Ions Using the SPC/E Model for Water at 25 °C† , 1996 .

[10]  M. Holz,et al.  Temperature-dependent self-diffusion coefficients of water and six selected molecular liquids for calibration in accurate 1H NMR PFG measurements , 2000 .

[11]  R. Keynes The ionic channels in excitable membranes. , 1975, Ciba Foundation symposium.

[12]  S. Rick Simulations of ice and liquid water over a range of temperatures using the fluctuating charge model , 2001 .

[13]  Wilfred F. van Gunsteren,et al.  Validation of molecular dynamics simulation , 1998 .

[14]  A. Brodsky Is there predictive value in water computer simulations , 1996 .

[15]  M. Karplus,et al.  CHARMM: A program for macromolecular energy, minimization, and dynamics calculations , 1983 .

[16]  M. Holz,et al.  Biological applications of scanning tunnelling microscopy , 1993 .

[17]  P. Stilbs,et al.  Fourier transform pulsed-gradient spin-echo studies of molecular diffusion , 1987 .

[18]  Pengyu Y. Ren,et al.  Temperature and Pressure Dependence of the AMOEBA Water Model , 2004 .

[19]  U. Singh,et al.  A NEW FORCE FIELD FOR MOLECULAR MECHANICAL SIMULATION OF NUCLEIC ACIDS AND PROTEINS , 1984 .

[20]  M. Berkowitz,et al.  Temperature dependence of conductance of the Li+, Cs+, and Cl− ions in water: Molecular dynamics simulation , 1988 .

[21]  C. Brooks Computer simulation of liquids , 1989 .