Reciprocal best match graphs
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[1] Peter F. Stadler,et al. Best match graphs and reconciliation of gene trees with species trees , 2019, Journal of Mathematical Biology.
[2] Dulce I. Valdivia,et al. Best match graphs , 2019, Journal of Mathematical Biology.
[3] Carsten R. Seemann,et al. Alternative characterizations of Fitch’s xenology relation , 2018, Journal of Mathematical Biology.
[4] Peter F. Stadler,et al. Reconstructing gene trees from Fitch’s xenology relation , 2017, Journal of Mathematical Biology.
[5] Peter F Stadler,et al. Gene Phylogenies and Orthologous Groups. , 2018, Methods in molecular biology.
[6] Limsoon Wong,et al. OrthoGNC: A Software for Accurate Identification of Orthologs Based on Gene Neighborhood Conservation , 2017, Genom. Proteom. Bioinform..
[7] Marc Hellmuth,et al. Biologically feasible gene trees, reconciliation maps and informative triples , 2017, Algorithms for Molecular Biology.
[8] Gaston H. Gonnet,et al. Orthologous Matrix (OMA) algorithm 2.0: more robust to asymmetric evolutionary rates and more scalable hierarchical orthologous group inference , 2017, Bioinform..
[9] Peter F. Stadler,et al. The mathematics of xenology: di-cographs, symbolic ultrametrics, 2-structures and tree-representable systems of binary relations , 2016, Journal of Mathematical Biology.
[10] Adrian M. Altenhoff,et al. Standardized benchmarking in the quest for orthologs , 2016, Nature Methods.
[11] Martin Middendorf,et al. Phylogenomics with paralogs , 2015, Proceedings of the National Academy of Sciences.
[12] Marc Hellmuth,et al. On the Cartesian skeleton and the factorization of the strong product of digraphs , 2014, Theor. Comput. Sci..
[13] Daniel Doerr,et al. Orthology Detection Combining Clustering and Synteny for Very Large Datasets , 2014, PloS one.
[14] Hans-Peter Lenhof,et al. Phylogenetics from paralogs , 2014 .
[15] Katharina T. Huber,et al. Orthology relations, symbolic ultrametrics, and cographs , 2013, Journal of mathematical biology.
[16] Katharina T. Huber,et al. From event-labeled gene trees to species trees , 2012, BMC Bioinformatics.
[17] Ji Li,et al. Combinatorial Logarithm and Point-Determining Cographs , 2012, Electron. J. Comb..
[18] W. Imrich,et al. Handbook of Product Graphs, Second Edition , 2011 .
[19] J. Reifman,et al. QuartetS: a fast and accurate algorithm for large-scale orthology detection , 2011, Nucleic acids research.
[20] Christophe Dessimoz,et al. Phylogenetic and Functional Assessment of Orthologs Inference Projects and Methods , 2009, PLoS Comput. Biol..
[21] Michel Habib,et al. A simple linear time algorithm for cograph recognition , 2005, Discret. Appl. Math..
[22] Christophe Paul,et al. Fully dynamic recognition algorithm and certificate for directed cographs , 2004, Graph-Theoretic Concepts in Computer Science.
[23] D. P. Wall,et al. Detecting putative orthologs , 2003, Bioinform..
[24] Michel Habib,et al. A Simple Linear Time LexBFS Cograph Recognition Algorithm , 2003, WG.
[25] W. Fitch. Homology a personal view on some of the problems. , 2000, Trends in genetics : TIG.
[26] R. Overbeek,et al. The use of gene clusters to infer functional coupling. , 1999, Proceedings of the National Academy of Sciences of the United States of America.
[27] Yan P. Yuan,et al. Predicting function: from genes to genomes and back. , 1998, Journal of molecular biology.
[28] D. Lipman,et al. A genomic perspective on protein families. , 1997, Science.
[29] Uzi Vishkin,et al. On Finding Lowest Common Ancestors: Simplification and Parallelization , 1988, AWOC.
[30] Lorna Stewart,et al. A Linear Recognition Algorithm for Cographs , 1985, SIAM J. Comput..
[31] Alfred V. Aho,et al. Inferring a Tree from Lowest Common Ancestors with an Application to the Optimization of Relational Expressions , 1981, SIAM J. Comput..
[32] Derek G. Corneil,et al. Complement reducible graphs , 1981, Discret. Appl. Math..
[33] David P. Sumner. Dacey Graphs , 1974, Journal of the Australian Mathematical Society.
[34] Frank Harary,et al. The number of caterpillars , 1973, Discret. Math..
[35] Ralph McKenzie,et al. Cardinal multiplication of structures with a reflexive relation , 1971 .
[36] R. P. Suggate,et al. The Definition of , 1965 .