Protein Data Bank: the single global archive for 3D macromolecular structure data
暂无分享,去创建一个
Cole H. Christie | Jose M. Duarte | Rachel Kramer Green | Alexander S. Rose | Jonathan R. Wedell | David R. Armstrong | Hirofumi Suzuki | M. Livny | J. Hoch | D. Goodsell | H. Berman | Y. Ioannidis | G. Kleywegt | J. Westbrook | Haruki Nakamura | S. Burley | Robert Lowe | A. Patwardhan | L. Mak | J. M. Dana | S. Velankar | Zukang Feng | E. Ulrich | J. Markley | J. Koča | R. Vareková | Jasmine Y. Young | Li Chen | P. Gane | M. J. Conroy | A. Nakagawa | S. Mir | Kumaran Baskaran | T. Fujiwara | E. Peisach | D. Guzenko | A. Gutmanas | M. Yokochi | N. Kobayashi | G. Bekker | Dimitri Maziuk | C. Zardecki | L. Costanzo | Yana Valasatava | G. Kurisu | Sutapa Ghosh | B. Hudson | A. Mukhopadhyay | C. Shao | S. Dutta | Maria Voigt | D. Sehnal | L. Pravda | D. Gupta | Yuhe Liang | J. Berrisford | Yi-Ping Tao | Stephen Anyango | Mandar S. Deshpande | Romana Gáborová | Nurul Nadzirin | Sreenath Nair | T. Paysan-Lafosse | O. Salih | Yasuyo Ikegawa | Ju Yaen Kim | M. Váradi | Monica Sekharan | Charmi Bhikadiya | Chunxiao Bi | Vladimir Guranovic | Takeshi Iwata | Hongyang Yao | Chris Randle | R. Yamashita | M. Zhuravleva | Stephen K Helen M Charmi Chunxiao Li Luigi Di Cole Jose M Burley Berman Bhikadiya Bi Chen Costanzo | Irina Periskova | Yumiko Kengaku | Hasumi Cho | Junko Sato | Takahiro Kudou | Pedro Romero | S. Anyango | M. Deshpande | Shuchismita Dutta | D. Armstrong
[1] John L. Markley,et al. STAR/CIF macromolecular NMR data dictionaries and data file formats , 1996 .
[2] T. N. Bhat,et al. The Protein Data Bank , 2000, Nucleic Acids Res..
[3] Philip E. Bourne,et al. STAR/mmCIF: An ontology for macromolecular structure , 2000, Bioinform..
[4] K. Henrick,et al. New electron microscopy database and deposition system. , 2002, Trends in biochemical sciences.
[5] Jun Zhu,et al. BioMagResBank database with sets of experimental NMR constraints corresponding to the structures of over 1400 biomolecules deposited in the Protein Data Bank , 2003, Journal of biomolecular NMR.
[6] Haruki Nakamura,et al. Announcing the worldwide Protein Data Bank , 2003, Nature Structural Biology.
[7] N. O. Manning,et al. The protein data bank , 1999, Genetica.
[8] Haruki Nakamura,et al. PDBML: the representation of archival macromolecular structure data in XML , 2005, Bioinform..
[9] Philip E. Bourne,et al. Macromolecular dictionary (mmCIF) , 2006 .
[10] Haruki Nakamura,et al. Remediation of the protein data bank archive , 2007, Nucleic Acids Res..
[11] Miron Livny,et al. BioMagResBank , 2007, Nucleic Acids Res..
[12] Randy J. Read,et al. A New Generation of Crystallographic Validation Tools for the Protein Data Bank , 2011, Structure.
[13] Sameer Velankar,et al. Implementing an X-ray validation pipeline for the Protein Data Bank , 2012, Acta crystallographica. Section D, Biological crystallography.
[14] M. Baker,et al. Outcome of the First Electron Microscopy Validation Task Force Meeting , 2012, Structure.
[15] Akira R. Kinjo,et al. Protein Data Bank Japan (PDBj): maintaining a structural data archive and resource description framework format , 2011, Nucleic Acids Res..
[16] Jill Trewhella,et al. Report of the wwPDB Small-Angle Scattering Task Force: data requirements for biomolecular modeling and the PDB. , 2013, Structure.
[17] Zukang Feng,et al. Chemical annotation of small and peptide-like molecules at the Protein Data Bank , 2013, Database J. Biol. Databases Curation.
[18] G. Montelione,et al. Recommendations of the wwPDB NMR Validation Task Force. , 2013, Structure.
[19] Piotr Sliz,et al. Collaboration gets the most out of software , 2013, eLife.
[20] Frank H. Allen,et al. The Cambridge Structural Database in retrospect and prospect. , 2014, Angewandte Chemie.
[21] Zukang Feng,et al. The chemical component dictionary: complete descriptions of constituent molecules in experimentally determined 3D macromolecules in the Protein Data Bank , 2015, Bioinform..
[22] Haruki Nakamura,et al. Outcome of the First wwPDB Hybrid/Integrative Methods Task Force Workshop. , 2015, Structure.
[23] Michael Nilges,et al. NMR Exchange Format: a unified and open standard for representation of NMR restraint data , 2015, Nature Structural &Molecular Biology.
[24] Dmitri I. Svergun,et al. SASBDB, a repository for biological small-angle scattering data , 2014, Nucleic Acids Res..
[25] Haruki Nakamura,et al. Outcome of the First wwPDB/CCDC/D3R Ligand Validation Workshop. , 2016, Structure.
[26] Wladek Minor,et al. A public database of macromolecular diffraction experiments. , 2016, Acta Crystallographica Section D: Structural Biology.
[27] Ardan Patwardhan,et al. EMPIAR: a public archive for raw electron microscopy image data , 2016, Nature Methods.
[28] Shuai Liu,et al. D3R Grand Challenge 2: blind prediction of protein–ligand poses, affinity rankings, and relative binding free energies , 2017, Journal of Computer-Aided Molecular Design.
[29] Genji Kurisu,et al. PDB-Dev: a Prototype System for Depositing Integrative/Hybrid Structural Models. , 2017, Structure.
[30] F. Arnaud,et al. From core referencing to data re-use: two French national initiatives to reinforce paleodata stewardship (National Cyber Core Repository and LTER France Retro-Observatory) , 2017 .
[31] Naohiro Kobayashi,et al. Validation of Structures in the Protein Data Bank , 2017, Structure.
[32] Naohiro Kobayashi,et al. OneDep: Unified wwPDB System for Deposition, Biocuration, and Validation of Macromolecular Structures in the PDB Archive. , 2017, Structure.
[33] Akira R. Kinjo,et al. Protein Data Bank Japan (PDBj): updated user interfaces, resource description framework, analysis tools for large structures , 2016, Nucleic Acids Res..
[34] Helen M Berman,et al. Development of a Prototype System for Archiving Integrative/Hybrid Structure Models of Biological Macromolecules. , 2018, Structure.
[35] Alessandro Barbato,et al. Continuous Automated Model EvaluatiOn (CAMEO) complementing the critical assessment of structure prediction in CASP12 , 2018, Proteins.
[36] Ardan Patwardhan,et al. EMDB Web Resources , 2018, Current protocols in bioinformatics.
[37] Abhik Mukhopadhyay,et al. PDBe: towards reusable data delivery infrastructure at protein data bank in Europe , 2017, Nucleic Acids Res..
[38] Genji Kurisu,et al. Worldwide Protein Data Bank biocuration supporting open access to high-quality 3D structural biology data , 2018, Database J. Biol. Databases Curation.
[39] Sameer Velankar,et al. Validation of ligands in macromolecular structures determined by X-ray crystallography , 2018, Acta crystallographica. Section D, Structural biology.
[40] Anna Tramontano,et al. Evaluation of the template‐based modeling in CASP12 , 2018, Proteins.
[41] Sameer Velankar,et al. The challenge of modeling protein assemblies: the CASP12‐CAPRI experiment , 2018, Proteins.