Genome-scale genetic engineering in Escherichia coli.
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Duhee Bang | Namjin Cho | D. Bang | Jaehwan Jeong | Jaehwan Jeong | Daehee Jung | Namjin Cho | Daehee Jung | Duhee Bang
[1] D. Court,et al. Cell toxicity caused by products of the p(L) operon of bacteriophage lambda. , 2001, Gene.
[2] K. Brčić-Kostić,et al. Effects of recJ, recQ, and recFOR Mutations on Recombination in Nuclease-Deficient recB recD Double Mutants of Escherichia coli , 2005, Journal of bacteriology.
[3] N. W. Davis,et al. The complete genome sequence of Escherichia coli K-12. , 1997, Science.
[4] Mihail Sarov,et al. An improved recombineering approach by adding RecA to λ Red recombination , 2006 .
[5] M. Ptashne,et al. Lambda repressor turns off transcription of its own gene. , 1975, Proceedings of the National Academy of Sciences of the United States of America.
[6] Zixin Deng,et al. Phosphorothioation of DNA in bacteria by dnd genes. , 2007, Nature chemical biology.
[7] S. Sharan,et al. A simple two-step, 'hit and fix' method to generate subtle mutations in BACs using short denatured PCR fragments. , 2003, Nucleic acids research.
[8] G. Church,et al. Lambda Red Recombineering in Escherichia coli Occurs Through a Fully Single-Stranded Intermediate , 2010, Genetics.
[9] Giuseppe Testa,et al. DNA cloning by homologous recombination in Escherichia coli , 2000, Nature Biotechnology.
[10] R. Kolodner,et al. Homologous pairing and strand exchange promoted by the Escherichia coli RecT protein. , 1994, Proceedings of the National Academy of Sciences of the United States of America.
[11] Farren J. Isaacs,et al. Precise Manipulation of Chromosomes in Vivo Enables Genome-Wide Codon Replacement , 2011, Science.
[12] Dale B. Wigley,et al. Crystal structure of RecBCD enzyme reveals a machine for processing DNA breaks , 2004, Nature.
[13] Duhee Bang,et al. ‘Shotgun DNA synthesis’ for the high-throughput construction of large DNA molecules , 2012, Nucleic acids research.
[14] Nancy A. Jenkins,et al. Recombineering: a powerful new tool for mouse functional genomics , 2001, Nature Reviews Genetics.
[15] Roeland M. H. Merks,et al. Redox balance is key to explaining full vs. partial switching to low-yield metabolism , 2012, BMC Systems Biology.
[16] A. Kuzminov. Recombinational Repair of DNA Damage inEscherichia coli and Bacteriophage λ , 1999, Microbiology and Molecular Biology Reviews.
[17] Daiguan Yu,et al. Recombineering with overlapping single-stranded DNA oligonucleotides: Testing a recombination intermediate , 2003, Proceedings of the National Academy of Sciences of the United States of America.
[18] D. Julin,et al. Structure and Function of the Escherichia coli RecE Protein, a Member of the RecB Nuclease Domain Family* , 2001, The Journal of Biological Chemistry.
[19] G. Stephanopoulos,et al. Feedback Inhibition of Chorismate Mutase/Prephenate Dehydrogenase (TyrA) of Escherichia coli: Generation and Characterization of Tyrosine-Insensitive Mutants , 2005, Applied and Environmental Microbiology.
[20] Sriram Kosuri,et al. Scalable gene synthesis by selective amplification of DNA pools from high-fidelity microchips , 2010, Nature Biotechnology.
[21] G. Reddy,et al. The beta protein of phage lambda binds preferentially to an intermediate in DNA renaturation. , 1998, Journal of molecular biology.
[22] M. Dutreix,et al. Conserved sequence preference in DNA binding among recombination proteins: an effect of ssDNA secondary structure. , 1999, Nucleic acids research.
[23] Farren J. Isaacs,et al. Enhanced multiplex genome engineering through co-operative oligonucleotide co-selection , 2012, Nucleic acids research.
[24] P. Modrich,et al. DNA mismatch repair: functions and mechanisms. , 2006, Chemical reviews.
[25] N. Pavletich,et al. Mechanism of homologous recombination from the RecA–ssDNA/dsDNA structures , 2008, Nature.
[26] S. Rosenberg,et al. Roles of E. coli double-strand-break-repair proteins in stress-induced mutation. , 2006, DNA repair.
[27] Farren J. Isaacs,et al. Programming cells by multiplex genome engineering and accelerated evolution , 2009, Nature.
[28] D. Court,et al. An efficient recombination system for chromosome engineering in Escherichia coli. , 2000, Proceedings of the National Academy of Sciences of the United States of America.
[29] A. Pühler,et al. A Broad Host Range Mobilization System for In Vivo Genetic Engineering: Transposon Mutagenesis in Gram Negative Bacteria , 1983, Bio/Technology.
[30] D. Court,et al. Recombineering: a homologous recombination-based method of genetic engineering , 2009, Nature Protocols.
[31] R. Kolodner,et al. Identification and characterization of the Escherichia coli RecT protein, a protein encoded by the recE region that promotes renaturation of homologous single-stranded DNA , 1993 .
[32] K. Murphy,et al. PCR-mediated gene replacement in Escherichia coli. , 2000, Gene.
[33] J. Keasling,et al. Manipulation of the carbon storage regulator system for metabolite remodeling and biofuel production in Escherichia coli , 2012, Microbial Cell Factories.
[34] A. Burgard,et al. Metabolic engineering of Escherichia coli for direct production of 1,4-butanediol. , 2011, Nature chemical biology.
[35] D. G. Gibson,et al. Enzymatic assembly of DNA molecules up to several hundred kilobases , 2009, Nature Methods.
[36] Keith E. J. Tyo,et al. Isoprenoid Pathway Optimization for Taxol Precursor Overproduction in Escherichia coli , 2010, Science.
[37] K. Murphy,et al. Lambda Red-mediated recombinogenic engineering of enterohemorrhagic and enteropathogenic E. coli , 2003, BMC Molecular Biology.
[38] Frank Buchholz,et al. A new logic for DNA engineering using recombination in Escherichia coli , 1998, Nature Genetics.
[39] R. Schaaper,et al. Spectra of spontaneous mutations in Escherichia coli strains defective in mismatch correction: the nature of in vivo DNA replication errors. , 1987, Proceedings of the National Academy of Sciences of the United States of America.
[40] Youming Zhang,et al. RecE/RecT and Redα/Redβ initiate double-stranded break repair by specifically interacting with their respective partners , 2000, Genes & Development.
[41] G. Reddy,et al. The beta protein of phage lambda promotes strand exchange. , 1998, Journal of molecular biology.
[42] Christopher J. Gregg,et al. Manipulating replisome dynamics to enhance lambda Red-mediated multiplex genome engineering , 2012, Nucleic acids research.
[43] J. W. Little. An exonuclease induced by bacteriophage lambda. II. Nature of the enzymatic reaction. , 1967, The Journal of biological chemistry.
[44] N. Costantino,et al. A set of recombineering plasmids for gram-negative bacteria. , 2006, Gene.
[45] S. Kowalczykowski. Initiation of genetic recombination and recombination-dependent replication. , 2000, Trends in biochemical sciences.
[46] N. Costantino,et al. Recombineering: in vivo genetic engineering in E. coli, S. enterica, and beyond. , 2007, Methods in enzymology.
[47] H S Rosenkranz,et al. Reproducibility of microbial mutagenicity assays: II. Testing of carcinogens and noncarcinogens in Salmonella typhimurium and Escherichia coli. , 1985, Environmental mutagenesis.
[48] George M. Church,et al. Improving Lambda Red Genome Engineering in Escherichia coli via Rational Removal of Endogenous Nucleases , 2012, PloS one.
[49] I. Kobayashi,et al. Contribution of RecFOR machinery of homologous recombination to cell survival after loss of a restriction-modification gene complex. , 2009, Microbiology.
[50] E. Witkin. Ultraviolet mutagenesis and inducible DNA repair in Escherichia coli. , 1976, Bacteriological reviews.
[51] G. Church,et al. Genome-scale promoter engineering by Co-Selection MAGE , 2012, Nature Methods.
[52] A. Stewart,et al. Rapid modification of bacterial artificial chromosomes by ET-recombination. , 1999, Nucleic acids research.
[53] Y. Rikihisa,et al. Analysis of Involvement of the RecF Pathway in p44 Recombination in Anaplasma phagocytophilum and in Escherichia coli by Using a Plasmid Carrying the p44 Expression and p44 Donor Loci , 2006, Infection and Immunity.
[54] Xiaomei Zhou,et al. Identification and analysis of recombineering functions from Gram-negative and Gram-positive bacteria and their phages , 2008, Proceedings of the National Academy of Sciences.
[55] B. Wanner,et al. One-step inactivation of chromosomal genes in Escherichia coli K-12 using PCR products. , 2000, Proceedings of the National Academy of Sciences of the United States of America.
[56] N. Costantino,et al. Enhanced levels of λ Red-mediated recombinants in mismatch repair mutants , 2003, Proceedings of the National Academy of Sciences of the United States of America.
[57] N. Costantino,et al. Probing cellular processes with oligo-mediated recombination and using the knowledge gained to optimize recombineering. , 2011, Journal of molecular biology.
[58] T. Lash,et al. Role of Exonuclease and β Protein of Phage λ in Genetic Recombination, V. Recombination of λ DNA in Vitro , 1971 .
[59] Z. Horii,et al. Genetic analysis of the recF pathway to genetic recombination in Escherichia coli K12: isolation and characterization of mutants. , 1973, Journal of molecular biology.
[60] K. Murphy,et al. Use of Bacteriophage λ Recombination Functions To Promote Gene Replacement in Escherichia coli , 1998, Journal of bacteriology.
[61] Jie Yuan,et al. Achieving Optimal Growth through Product Feedback Inhibition in Metabolism , 2010, PLoS Comput. Biol..
[62] Si-Wouk Kim,et al. A novel flavin-containing monooxygenase from Methylophaga sp strain SK1 and its indigo synthesis in Escherichia coli. , 2003, Biochemical and biophysical research communications.
[63] G. Gish,et al. Phosphorothioates in molecular biology. , 1989, Trends in biochemical sciences.
[64] Ryan T Gill,et al. Rapid profiling of a microbial genome using mixtures of barcoded oligonucleotides , 2010, Nature Biotechnology.
[65] Gerald R. Smith. How RecBCD Enzyme and Chi Promote DNA Break Repair and Recombination: a Molecular Biologist's View , 2012, Microbiology and Molecular Reviews.
[66] Steven P Gygi,et al. Multiplexed in vivo His-tagging of enzyme pathways for in vitro single-pot multienzyme catalysis. , 2012, ACS synthetic biology.
[67] Jay D Keasling,et al. Transcription factor-based screens and synthetic selections for microbial small-molecule biosynthesis. , 2013, ACS synthetic biology.
[68] J. Courcelle,et al. RecQ and RecJ process blocked replication forks prior to the resumption of replication in UV-irradiated Escherichia coli , 1999, Molecular and General Genetics MGG.
[69] J. Craig Venter,et al. Creating Bacterial Strains from Genomes That Have Been Cloned and Engineered in Yeast , 2009, Science.
[70] Z. Deng,et al. DNA modification by sulfur: analysis of the sequence recognition specificity surrounding the modification sites , 2007, Nucleic acids research.
[71] George Church,et al. Modified bases enable high-efficiency oligonucleotide-mediated allelic replacement via mismatch repair evasion , 2011, Nucleic acids research.
[72] G. Stephanopoulos,et al. Multi-dimensional gene target search for improving lycopene biosynthesis in Escherichia coli. , 2007, Metabolic engineering.
[73] S. Roje,et al. In vivo studies on the interaction of RecBCD enzyme and lambda Gam protein , 1993, Journal of bacteriology.
[74] Thomas H Segall-Shapiro,et al. Creation of a Bacterial Cell Controlled by a Chemically Synthesized Genome , 2010, Science.
[75] Eric Markel,et al. Oligonucleotide recombination in Gram‐negative bacteria , 2010, Molecular microbiology.