A comprehensive comparison of ML algorithms for gene expression data classification
暂无分享,去创建一个
André Carlos Ponce de Leon Ferreira de Carvalho | Bruno Feres de Souza | Carlos Soares | Carlos Soares | A. Carvalho
[1] Rich Caruana,et al. An empirical comparison of supervised learning algorithms , 2006, ICML.
[2] Constantin F. Aliferis,et al. A comprehensive evaluation of multicategory classification methods for microarray gene expression cancer diagnosis , 2004, Bioinform..
[3] Wenjiang J. Fu,et al. Estimating misclassification error with small samples via bootstrap cross-validation , 2005, Bioinform..
[4] Roslin Russell,et al. Microarray Technology in Practice , 2008 .
[5] Annette M. Molinaro,et al. Prediction error estimation: a comparison of resampling methods , 2005, Bioinform..
[6] David J. Hand,et al. A Simple Generalisation of the Area Under the ROC Curve for Multiple Class Classification Problems , 2001, Machine Learning.
[7] Tom Fawcett,et al. An introduction to ROC analysis , 2006, Pattern Recognit. Lett..
[8] T. H. Bø,et al. LSimpute: accurate estimation of missing values in microarray data with least squares methods. , 2004, Nucleic acids research.
[9] Remco R. Bouckaert,et al. Estimating replicability of classifier learning experiments , 2004, ICML.
[10] Edward R. Dougherty,et al. Is cross-validation valid for small-sample microarray classification? , 2004, Bioinform..
[11] Jacques Cohen,et al. A Survey of Computational Methods Used in Microarray Data Interpretation , 2006 .
[12] S. García,et al. An Extension on "Statistical Comparisons of Classifiers over Multiple Data Sets" for all Pairwise Comparisons , 2008 .
[13] Richard Simon,et al. A comparison of bootstrap methods and an adjusted bootstrap approach for estimating the prediction error in microarray classification , 2007, Statistics in medicine.
[14] Thomas G. Dietterich. An Experimental Comparison of Three Methods for Constructing Ensembles of Decision Trees: Bagging, Boosting, and Randomization , 2000, Machine Learning.
[15] Charles X. Ling,et al. Using AUC and accuracy in evaluating learning algorithms , 2005, IEEE Transactions on Knowledge and Data Engineering.
[16] A. Isaksson,et al. Cross-validation and bootstrapping are unreliable in small sample classification , 2008, Pattern Recognit. Lett..
[17] Stefano Toppo,et al. Pattern recognition in gene expression profiling using DNA array: a comparative study of different statistical methods applied to cancer classification. , 2003, Human molecular genetics.
[18] R. Tibshirani,et al. Diagnosis of multiple cancer types by shrunken centroids of gene expression , 2002, Proceedings of the National Academy of Sciences of the United States of America.
[19] Ludmila I. Kuncheva,et al. Measures of Diversity in Classifier Ensembles and Their Relationship with the Ensemble Accuracy , 2003, Machine Learning.
[20] J. Mesirov,et al. Molecular classification of cancer: class discovery and class prediction by gene expression monitoring. , 1999, Science.
[21] Jae Won Lee,et al. An extensive comparison of recent classification tools applied to microarray data , 2004, Comput. Stat. Data Anal..
[22] Janez Demsar,et al. Statistical Comparisons of Classifiers over Multiple Data Sets , 2006, J. Mach. Learn. Res..
[23] Anne-Laure Boulesteix,et al. Dimension reduction and Classification with High-Dimensional Microarray Data , 2005 .
[24] Guy N. Brock,et al. Which missing value imputation method to use in expression profiles: a comparative study and two selection schemes , 2008, BMC Bioinformatics.
[25] Werner Dubitzky,et al. Avoiding model selection bias in small-sample genomic datasets , 2006, Bioinform..
[26] Kjell Johnson,et al. Evaluating Methods for Classifying Expression Data , 2004, Journal of biopharmaceutical statistics.
[27] Eric P. Xing. Feature Selection in Microarray Analysis , 2003 .
[28] David M. Rocke,et al. Dimension Reduction for Classification with Gene Expression Microarray Data , 2006, Statistical applications in genetics and molecular biology.
[29] Tom Fawcett,et al. Analysis and Visualization of Classifier Performance: Comparison under Imprecise Class and Cost Distributions , 1997, KDD.
[30] Hinrich W. H. Göhlmann,et al. Gene Expression Studies Using Affymetrix Microarrays , 2009, Chapman and Hall / CRC mathematical and computational biology series.
[31] Wei Pan,et al. A comparative study of discriminating human heart failure etiology using gene expression profiles , 2005, BMC Bioinformatics.
[32] Andreas Christmann,et al. Support vector machines , 2008, Data Mining and Knowledge Discovery Handbook.
[33] R. Simon,et al. Statistical Applications in Genetics and Molecular Biology Calculating Confidence Intervals for Prediction Error in Microarray Classification Using Resampling , 2011 .
[34] Anne-Laure Boulesteix,et al. CMA – a comprehensive Bioconductor package for supervised classification with high dimensional data , 2008, BMC Bioinformatics.
[35] Leo Breiman,et al. Random Forests , 2001, Machine Learning.
[36] Marti A. Hearst. Trends & Controversies: Support Vector Machines , 1998, IEEE Intell. Syst..
[37] Richard Baumgartner,et al. Class prediction and discovery using gene microarray and proteomics mass spectroscopy data: curses, caveats, cautions , 2003, Bioinform..
[38] Constantin F. Aliferis,et al. A comprehensive comparison of random forests and support vector machines for microarray-based cancer classification , 2008, BMC Bioinformatics.
[39] Danh V. Nguyen,et al. Multi-class cancer classification via partial least squares with gene expression profiles , 2002, Bioinform..
[40] S. Dudoit,et al. Comparison of Discrimination Methods for the Classification of Tumors Using Gene Expression Data , 2002 .
[41] Richard Simon,et al. Bias in error estimation when using cross-validation for model selection , 2006, BMC Bioinformatics.
[42] Ji-Hyun Kim,et al. Estimating classification error rate: Repeated cross-validation, repeated hold-out and bootstrap , 2009, Comput. Stat. Data Anal..
[43] Vladimir N. Vapnik,et al. The Nature of Statistical Learning Theory , 2000, Statistics for Engineering and Information Science.
[44] M. Daumer,et al. Evaluating Microarray-based Classifiers: An Overview , 2008, Cancer informatics.